Wall clock time and date at job start Tue Mar 31 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21289 * 119.99929 * 2 1 4 4 N 1.34775 * 120.00066 * 179.97438 * 2 1 3 5 5 C 1.39930 * 119.99766 * 184.61885 * 4 2 1 6 6 C 1.38939 * 120.03661 * 145.18616 * 5 4 2 7 7 C 1.38126 * 120.05584 * 180.29889 * 6 5 4 8 8 C 1.38194 * 120.13483 * 359.72032 * 7 6 5 9 9 C 1.38842 * 120.07675 * 359.97438 * 8 7 6 10 10 N 1.40247 * 120.02655 * 180.02562 * 9 8 7 11 11 C 1.36979 * 127.17971 * 129.66682 * 10 9 8 12 12 N 1.30306 * 107.29362 * 179.86710 * 11 10 9 13 13 N 1.28511 * 110.14899 * 0.39862 * 12 11 10 14 14 C 1.31298 * 109.91904 * 359.74837 * 13 12 11 15 15 S 1.76202 * 126.50179 * 179.97438 * 14 13 12 16 16 C 1.80992 * 99.99869 * 0.03955 * 15 14 13 17 17 C 1.50696 * 109.47057 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00292 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00339 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47157 * 59.99422 * 21 19 17 23 23 H 1.48497 * 109.47089 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46820 * 299.99702 * 21 19 17 25 25 C 1.38703 * 119.94052 * 0.02562 * 9 8 7 26 26 H 1.09001 * 109.46825 * 270.00245 * 1 2 3 27 27 H 1.08996 * 109.47173 * 30.00049 * 1 2 3 28 28 H 1.08998 * 109.47326 * 150.01069 * 1 2 3 29 29 H 0.96996 * 119.99978 * 4.61570 * 4 2 1 30 30 H 1.08000 * 119.97603 * 359.97438 * 6 5 4 31 31 H 1.08006 * 119.93472 * 179.70022 * 7 6 5 32 32 H 1.08003 * 119.96224 * 180.02562 * 8 7 6 33 33 H 1.08004 * 126.35263 * 359.97438 * 11 10 9 34 34 H 1.08998 * 109.47643 * 300.00211 * 16 15 14 35 35 H 1.08999 * 109.47141 * 60.00395 * 16 15 14 36 36 H 0.97002 * 119.99760 * 180.02562 * 20 19 17 37 37 H 1.08006 * 120.07093 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5768 -1.1690 0.0981 6 6 4.2241 -2.1840 0.7918 7 6 5.6016 -2.1829 0.8936 8 6 6.3402 -1.1761 0.3014 9 6 5.6995 -0.1626 -0.3985 10 7 6.4501 0.8583 -0.9995 11 6 6.3589 1.3015 -2.2924 12 7 7.2298 2.2601 -2.4357 13 7 7.8667 2.4477 -1.3353 14 6 7.4303 1.6154 -0.4184 15 16 7.9995 1.4958 1.2448 16 6 9.2633 2.7914 1.2383 17 6 9.9049 2.8742 2.5994 18 1 9.5825 2.2122 3.3895 19 6 10.9026 3.7958 2.8364 20 7 11.2948 4.6023 1.8745 21 14 11.6983 3.8979 4.5234 22 1 12.3283 2.5942 4.8534 23 1 12.7351 4.9610 4.5181 24 1 10.6643 4.2193 5.5397 25 6 4.3164 -0.1606 -0.5027 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3634 -0.8901 -0.5137 29 1 1.6983 -2.0059 -0.0667 30 1 3.6495 -2.9717 1.2562 31 1 6.1025 -2.9702 1.4374 32 1 7.4172 -1.1782 0.3825 33 1 5.6882 0.9271 -3.0516 34 1 10.0222 2.5552 0.4924 35 1 8.8013 3.7485 0.9961 36 1 11.9970 5.2505 2.0412 37 1 3.8158 0.6266 -1.0470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192645445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:21 Heat of formation + Delta-G solvation = 49.831185 kcal Electronic energy + Delta-G solvation = -22967.141624 eV Core-core repulsion = 19450.336268 eV Total energy + Delta-G solvation = -3516.805356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.15231 -41.61864 -39.75755 -36.67340 -35.35903 -35.15932 -32.18806 -31.83155 -30.99501 -30.71045 -29.45923 -25.69882 -25.04637 -24.53330 -23.22263 -22.80849 -21.55718 -20.20703 -18.69940 -18.12567 -17.92967 -17.47370 -17.35404 -17.10920 -16.65304 -16.52373 -16.19014 -15.57229 -15.03824 -15.01752 -14.62533 -14.55037 -14.38888 -14.13044 -13.45173 -13.31327 -13.14343 -13.04290 -12.86914 -12.71893 -12.61637 -12.41654 -12.16746 -11.84664 -11.68796 -11.44103 -11.27633 -11.17396 -10.99751 -10.72865 -9.94053 -9.33502 -8.67066 -8.33405 -6.52454 -0.26362 0.10602 0.13621 0.65056 1.32831 1.41073 1.46225 1.50443 1.52933 1.59025 1.61193 2.03498 2.36540 2.56753 3.00668 3.47082 3.65736 3.84082 3.93677 3.99597 4.03649 4.15257 4.31434 4.41256 4.50132 4.60033 4.65484 4.78310 4.85149 4.98275 5.03635 5.12480 5.17624 5.28516 5.32259 5.50698 5.66239 5.76496 5.94531 6.38533 6.56200 7.09881 7.17237 7.41093 8.78840 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003220 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.842063 B = 8694.645222 C = 9143.405799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.583 6.583 4 N -0.655 5.655 5 C 0.152 3.848 6 C -0.112 4.112 7 C -0.072 4.072 8 C -0.132 4.132 9 C 0.106 3.894 10 N -0.421 5.421 11 C 0.174 3.826 12 N -0.326 5.326 13 N -0.335 5.335 14 C 0.162 3.838 15 S 0.002 5.998 16 C 0.077 3.923 17 C -0.547 4.547 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.924 5.924 21 Si 0.986 3.014 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.127 4.127 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.437 0.563 30 H 0.182 0.818 31 H 0.175 0.825 32 H 0.124 0.876 33 H 0.267 0.733 34 H 0.020 0.980 35 H 0.014 0.986 36 H 0.272 0.728 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 -22.301 -2.045 33.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.291 3.709 3 O -0.462 6.462 4 N -0.303 5.303 5 C 0.057 3.943 6 C -0.132 4.132 7 C -0.090 4.090 8 C -0.152 4.152 9 C 0.015 3.985 10 N -0.112 5.112 11 C -0.116 4.116 12 N -0.163 5.163 13 N -0.177 5.177 14 C -0.212 4.212 15 S 0.231 5.769 16 C -0.071 4.071 17 C -0.586 4.586 18 H 0.095 0.905 19 C -0.187 4.187 20 N -0.561 5.561 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.149 4.149 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.279 0.721 30 H 0.199 0.801 31 H 0.192 0.808 32 H 0.142 0.858 33 H 0.282 0.718 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.772 -20.974 -1.929 31.761 hybrid contribution 0.354 0.539 -0.404 0.760 sum -23.419 -20.435 -2.333 31.169 Atomic orbital electron populations 1.21925 0.86370 1.06887 1.06730 1.22063 0.92917 0.82423 0.73448 1.90807 1.71839 1.33630 1.49936 1.43532 1.03510 1.11008 1.72250 1.17585 0.84103 0.95858 0.96794 1.21497 0.94754 0.99338 0.97627 1.21268 0.93537 0.97318 0.96916 1.21326 1.01212 0.93786 0.98907 1.17731 0.90370 0.89027 1.01413 1.44221 1.28444 1.28124 1.10396 1.27550 1.01947 0.95746 0.86308 1.73827 1.08369 1.16163 1.17922 1.74747 1.23956 1.22027 0.97012 1.27584 0.94837 0.95428 1.03390 1.84923 1.45745 1.49796 0.96389 1.20934 0.92843 0.92503 1.00867 1.20924 1.21034 1.21226 0.95402 0.90461 1.26067 0.96423 0.93917 1.02305 1.70137 1.29635 1.21263 1.35080 0.85202 0.78046 0.78615 0.77410 1.18284 1.20402 1.18644 1.20989 0.90530 1.01194 1.02235 0.86724 0.89074 0.86061 0.72145 0.80094 0.80802 0.85828 0.71765 0.96163 0.96760 0.91936 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 10.31 71.24 0.73 -0.01 16 2 C 0.50 7.72 7.78 87.66 0.68 8.40 16 3 O -0.58 -16.88 14.54 -3.06 -0.04 -16.93 16 4 N -0.65 -6.59 5.34 -303.55 -1.62 -8.21 16 5 C 0.15 2.58 6.30 38.14 0.24 2.82 16 6 C -0.11 -1.29 9.96 22.41 0.22 -1.07 16 7 C -0.07 -1.09 10.03 22.23 0.22 -0.87 16 8 C -0.13 -3.30 8.97 22.40 0.20 -3.10 16 9 C 0.11 3.14 5.92 38.05 0.23 3.36 16 10 N -0.42 -15.67 2.92 -349.69 -1.02 -16.69 16 11 C 0.17 6.04 12.54 179.69 2.25 8.29 16 12 N -0.33 -14.60 12.17 -59.18 -0.72 -15.32 16 13 N -0.33 -17.28 11.60 -56.68 -0.66 -17.93 16 14 C 0.16 7.51 7.91 179.46 1.42 8.93 16 15 S 0.00 0.09 20.80 -56.49 -1.17 -1.09 16 16 C 0.08 4.47 4.99 71.23 0.36 4.83 16 17 C -0.55 -31.84 9.13 25.60 0.23 -31.60 16 18 H 0.08 4.23 7.71 -2.91 -0.02 4.21 16 19 C 0.01 0.85 5.46 84.65 0.46 1.31 16 20 N -0.92 -57.42 13.29 21.45 0.28 -57.14 16 21 Si 0.99 43.97 29.54 68.60 2.03 46.00 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 C -0.13 -3.30 8.37 22.50 0.19 -3.11 16 26 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.44 0.00 8.82 -92.71 -0.82 -0.82 16 30 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 31 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.12 3.46 7.65 -2.91 -0.02 3.44 16 33 H 0.27 5.89 8.06 -2.91 -0.02 5.87 16 34 H 0.02 1.27 8.14 -2.40 -0.02 1.25 16 35 H 0.01 0.90 8.14 -2.40 -0.02 0.88 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.13 3.78 6.23 -2.91 -0.02 3.76 16 Total: -1.00 -90.17 342.77 4.82 -85.35 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.30 Total: 3.78 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 7.44 Total: -1.82 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.73 Total: -115.30 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.04 Total: -16.93 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.17 Total: -1.09 kcal Total: -90.17 4.82 -85.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192645445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.179 kcal (2) G-P(sol) polarization free energy of solvation -90.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds