Wall clock time and date at job start Tue Mar 31 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47312 * 2 1 4 4 N 1.46505 * 109.47237 * 119.99826 * 2 1 3 5 5 C 1.34774 * 120.00150 * 275.00170 * 4 2 1 6 6 O 1.21611 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.47433 * 119.99869 * 179.97438 * 5 4 2 8 8 C 1.39681 * 120.21363 * 0.02930 * 7 5 4 9 9 C 1.37805 * 119.93452 * 179.97438 * 8 7 5 10 10 C 1.38654 * 120.38625 * 0.02562 * 9 8 7 11 11 C 1.37919 * 120.43362 * 0.02562 * 10 9 8 12 12 C 1.39103 * 120.05168 * 359.97438 * 11 10 9 13 13 S 1.76206 * 120.18762 * 180.02562 * 12 11 10 14 14 C 1.76190 * 99.99940 * 6.84043 * 13 12 11 15 15 H 1.07998 * 120.00270 * 5.65109 * 14 13 12 16 16 C 1.38809 * 120.00047 * 185.65490 * 14 13 12 17 17 N 1.31555 * 120.00018 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00065 * 18 16 14 20 20 H 1.48500 * 109.46864 * 209.99830 * 18 16 14 21 21 H 1.48502 * 109.47056 * 329.99897 * 18 16 14 22 22 C 1.50693 * 109.47418 * 240.00217 * 2 1 3 23 23 N 1.30522 * 126.34707 * 265.02471 * 22 2 1 24 24 N 1.28604 * 109.67568 * 179.97438 * 23 22 2 25 25 C 1.30518 * 109.66934 * 359.97438 * 24 23 22 26 26 N 1.35497 * 107.31062 * 359.77554 * 25 24 23 27 27 H 0.96996 * 126.98046 * 180.22372 * 26 25 24 28 28 H 1.09003 * 109.46425 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46954 * 299.99876 * 1 2 3 30 30 H 1.09000 * 109.46661 * 60.00111 * 1 2 3 31 31 H 0.97000 * 119.99614 * 95.00384 * 4 2 1 32 32 H 1.07997 * 120.03131 * 359.97438 * 8 7 5 33 33 H 1.08008 * 119.80557 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.78248 * 180.28485 * 10 9 8 35 35 H 1.07998 * 119.97190 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00225 * 179.97438 * 17 16 14 37 37 H 1.08003 * 126.34609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1618 2.4117 7 6 2.6381 -0.7134 3.5611 8 6 2.9717 -2.0686 3.5033 9 6 3.4305 -2.7125 4.6320 10 6 3.5632 -2.0232 5.8277 11 6 3.2373 -0.6851 5.9025 12 6 2.7724 -0.0172 4.7744 13 16 2.3557 1.6924 4.8658 14 6 2.9065 2.0546 6.4997 15 1 3.4333 1.3045 7.0708 16 6 2.6633 3.3042 7.0531 17 7 2.0220 4.2182 6.3574 18 14 3.2466 3.6880 8.7857 19 1 4.6185 4.2537 8.7322 20 1 2.3285 4.6743 9.4099 21 1 3.2563 2.4412 9.5923 22 6 2.0324 -0.7103 -1.2304 23 7 2.3763 -1.9668 -1.3121 24 7 2.7563 -2.2346 -2.5111 25 6 2.6716 -1.1613 -3.2489 26 7 2.2048 -0.1646 -2.4586 27 1 2.0314 0.7536 -2.7187 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 2.2492 -1.6317 1.1526 32 1 2.8701 -2.6111 2.5751 33 1 3.6882 -3.7603 4.5849 34 1 3.9281 -2.5363 6.7051 35 1 3.3431 -0.1555 6.8378 36 1 1.8517 5.0912 6.7442 37 1 2.9237 -1.0830 -4.2962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227766118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:23 Heat of formation + Delta-G solvation = 72.246705 kcal Electronic energy + Delta-G solvation = -23183.317915 eV Core-core repulsion = 19667.484569 eV Total energy + Delta-G solvation = -3515.833346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.40227 -39.61824 -37.59568 -35.54997 -34.01880 -32.75758 -31.84744 -30.26747 -30.24974 -29.30391 -25.82560 -24.74249 -23.16808 -22.94607 -21.95069 -21.19336 -19.94455 -18.99657 -18.00216 -17.15359 -16.21438 -16.20279 -15.83716 -15.20309 -15.03373 -14.68825 -14.52727 -14.13212 -13.82433 -13.69350 -13.12682 -12.97896 -12.82471 -12.31439 -11.98331 -11.87665 -11.60151 -11.56920 -11.20619 -11.18977 -11.12519 -10.93414 -10.67051 -10.32179 -9.84346 -9.68838 -9.57225 -9.48931 -8.94489 -8.72192 -8.32114 -8.09501 -6.53443 -6.46988 -4.17057 1.48746 1.53541 2.05098 2.36826 2.60765 3.10249 3.12660 3.19227 3.38651 3.43755 3.48748 3.92062 4.06066 4.47152 4.49608 4.81677 4.94219 5.01129 5.07482 5.13459 5.21159 5.31778 5.40488 5.51985 5.63540 5.73392 5.79578 5.99153 6.10153 6.14907 6.40557 6.59521 6.63921 6.72298 6.88108 7.04681 7.15415 7.45107 7.60821 7.85200 8.16035 8.42512 8.70574 8.99716 10.56391 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.003402 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.236886 B = 8228.928043 C = 9337.851432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.108 0.892 4 N -0.726 5.726 5 C 0.558 3.442 6 O -0.510 6.510 7 C -0.178 4.178 8 C -0.058 4.058 9 C -0.185 4.185 10 C -0.075 4.075 11 C -0.154 4.154 12 C -0.054 4.054 13 S 0.181 5.819 14 C -0.595 4.595 15 H 0.091 0.909 16 C 0.084 3.916 17 N -0.859 5.859 18 Si 0.919 3.081 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.179 3.821 23 N -0.287 5.287 24 N -0.295 5.295 25 C 0.153 3.847 26 N -0.577 5.577 27 H 0.432 0.568 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.408 0.592 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.274 0.726 37 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -8.129 -15.181 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.125 0.875 4 N -0.382 5.382 5 C 0.348 3.652 6 O -0.387 6.387 7 C -0.193 4.193 8 C -0.078 4.078 9 C -0.209 4.209 10 C -0.097 4.097 11 C -0.179 4.179 12 C -0.174 4.174 13 S 0.446 5.554 14 C -0.741 4.741 15 H 0.109 0.891 16 C -0.127 4.127 17 N -0.492 5.492 18 Si 0.744 3.256 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.091 4.091 23 N -0.128 5.128 24 N -0.134 5.134 25 C -0.136 4.136 26 N -0.190 5.190 27 H 0.271 0.729 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.245 0.755 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.309 -7.514 -15.428 17.211 hybrid contribution 0.809 0.636 1.203 1.583 sum -0.501 -6.878 -14.225 15.809 Atomic orbital electron populations 1.22220 0.93031 1.03240 1.03430 1.18945 0.94364 0.95629 0.78353 0.87454 1.45735 1.69767 1.14592 1.08100 1.18320 0.77769 0.86494 0.82605 1.90781 1.49096 1.15016 1.83817 1.19005 1.13277 0.94430 0.92564 1.20975 0.96199 0.92885 0.97776 1.20663 1.07374 0.99474 0.93435 1.21106 0.97187 0.94292 0.97137 1.21431 1.02984 0.94579 0.98952 1.23064 0.97354 1.03068 0.93941 1.84665 1.64014 0.93104 1.13655 1.24050 1.43175 1.02647 1.04250 0.89133 1.25090 0.93658 0.94988 0.98994 1.69970 1.36640 1.05123 1.37427 0.86154 0.78834 0.78656 0.81949 1.19891 1.20497 1.19213 1.25040 1.03101 0.92385 0.88601 1.74168 1.15523 1.10669 1.12412 1.74267 1.17907 1.23322 0.97939 1.26544 1.02098 0.84688 1.00269 1.44029 1.50689 1.14608 1.09629 0.72851 0.91602 0.89814 0.91932 0.75503 0.86807 0.86941 0.86981 0.84355 0.91571 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.47 37.16 0.35 -1.37 16 2 C 0.24 2.83 3.12 -69.08 -0.22 2.62 16 3 H 0.11 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.73 -10.59 5.02 -56.00 -0.28 -10.87 16 5 C 0.56 10.50 7.71 -12.52 -0.10 10.41 16 6 O -0.51 -11.17 13.43 5.27 0.07 -11.10 16 7 C -0.18 -3.51 5.89 -104.75 -0.62 -4.12 16 8 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 9 C -0.18 -2.93 10.02 -39.59 -0.40 -3.33 16 10 C -0.08 -1.29 10.03 -39.54 -0.40 -1.69 16 11 C -0.15 -3.22 9.22 -39.38 -0.36 -3.58 16 12 C -0.05 -1.23 6.14 -38.40 -0.24 -1.47 16 13 S 0.18 4.77 18.56 -107.50 -2.00 2.78 16 14 C -0.59 -16.22 9.00 30.94 0.28 -15.95 16 15 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 16 C 0.08 2.27 5.49 -17.46 -0.10 2.17 16 17 N -0.86 -24.41 13.22 55.49 0.73 -23.68 16 18 Si 0.92 20.51 29.55 -169.99 -5.02 15.49 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.18 1.98 7.26 -154.98 -1.12 0.86 16 23 N -0.29 -3.87 11.48 32.80 0.38 -3.49 16 24 N -0.29 -3.68 12.21 29.69 0.36 -3.31 16 25 C 0.15 1.19 13.19 -89.94 -1.19 0.00 16 26 N -0.58 -4.20 6.20 -11.36 -0.07 -4.27 16 27 H 0.43 1.54 8.96 -40.82 -0.37 1.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.41 5.56 6.06 -40.82 -0.25 5.31 16 32 H 0.11 1.53 6.40 -52.49 -0.34 1.20 16 33 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.14 3.00 5.04 -52.49 -0.26 2.74 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.22 0.62 8.06 -52.48 -0.42 0.19 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -34.46 332.99 -8.82 -43.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.54 Total: 6.95 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -4.47 Total: -16.78 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.12 Total: -45.63 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.00 Total: 2.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.46 -8.82 -43.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227766118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.524 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds