Wall clock time and date at job start Tue Mar 31 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47312 * 2 1 4 4 N 1.46505 * 109.47237 * 119.99826 * 2 1 3 5 5 C 1.34774 * 120.00150 * 275.00170 * 4 2 1 6 6 O 1.21611 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.47433 * 119.99869 * 179.97438 * 5 4 2 8 8 C 1.39681 * 120.21363 * 0.02930 * 7 5 4 9 9 C 1.37805 * 119.93452 * 179.97438 * 8 7 5 10 10 C 1.38654 * 120.38625 * 0.02562 * 9 8 7 11 11 C 1.37919 * 120.43362 * 0.02562 * 10 9 8 12 12 C 1.39103 * 120.05168 * 359.97438 * 11 10 9 13 13 S 1.76206 * 120.18762 * 180.02562 * 12 11 10 14 14 C 1.76190 * 99.99940 * 6.84043 * 13 12 11 15 15 H 1.07998 * 120.00270 * 5.65109 * 14 13 12 16 16 C 1.38809 * 120.00047 * 185.65490 * 14 13 12 17 17 N 1.31555 * 120.00018 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00065 * 18 16 14 20 20 H 1.48500 * 109.46864 * 209.99830 * 18 16 14 21 21 H 1.48502 * 109.47056 * 329.99897 * 18 16 14 22 22 C 1.50693 * 109.47418 * 240.00217 * 2 1 3 23 23 N 1.30522 * 126.34707 * 265.02471 * 22 2 1 24 24 N 1.28604 * 109.67568 * 179.97438 * 23 22 2 25 25 C 1.30518 * 109.66934 * 359.97438 * 24 23 22 26 26 N 1.35497 * 107.31062 * 359.77554 * 25 24 23 27 27 H 0.96996 * 126.98046 * 180.22372 * 26 25 24 28 28 H 1.09003 * 109.46425 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46954 * 299.99876 * 1 2 3 30 30 H 1.09000 * 109.46661 * 60.00111 * 1 2 3 31 31 H 0.97000 * 119.99614 * 95.00384 * 4 2 1 32 32 H 1.07997 * 120.03131 * 359.97438 * 8 7 5 33 33 H 1.08008 * 119.80557 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.78248 * 180.28485 * 10 9 8 35 35 H 1.07998 * 119.97190 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00225 * 179.97438 * 17 16 14 37 37 H 1.08003 * 126.34609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1618 2.4117 7 6 2.6381 -0.7134 3.5611 8 6 2.9717 -2.0686 3.5033 9 6 3.4305 -2.7125 4.6320 10 6 3.5632 -2.0232 5.8277 11 6 3.2373 -0.6851 5.9025 12 6 2.7724 -0.0172 4.7744 13 16 2.3557 1.6924 4.8658 14 6 2.9065 2.0546 6.4997 15 1 3.4333 1.3045 7.0708 16 6 2.6633 3.3042 7.0531 17 7 2.0220 4.2182 6.3574 18 14 3.2466 3.6880 8.7857 19 1 4.6185 4.2537 8.7322 20 1 2.3285 4.6743 9.4099 21 1 3.2563 2.4412 9.5923 22 6 2.0324 -0.7103 -1.2304 23 7 2.3763 -1.9668 -1.3121 24 7 2.7563 -2.2346 -2.5111 25 6 2.6716 -1.1613 -3.2489 26 7 2.2048 -0.1646 -2.4586 27 1 2.0314 0.7536 -2.7187 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 2.2492 -1.6317 1.1526 32 1 2.8701 -2.6111 2.5751 33 1 3.6882 -3.7603 4.5849 34 1 3.9281 -2.5363 6.7051 35 1 3.3431 -0.1555 6.8378 36 1 1.8517 5.0912 6.7442 37 1 2.9237 -1.0830 -4.2962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227766118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:23 Heat of formation + Delta-G solvation = 48.965160 kcal Electronic energy + Delta-G solvation = -23184.327478 eV Core-core repulsion = 19667.484569 eV Total energy + Delta-G solvation = -3516.842909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.16551 -41.06972 -39.06549 -36.78497 -34.79160 -34.74723 -33.12974 -31.78390 -31.42552 -30.32489 -27.81997 -25.81225 -24.42520 -23.72383 -23.41378 -22.23911 -21.27458 -20.22207 -19.41221 -18.56640 -17.48352 -17.25024 -17.06278 -16.96757 -16.18691 -15.92501 -15.76966 -15.43113 -15.31359 -15.02127 -14.69262 -14.44648 -14.13186 -13.47062 -13.29617 -13.23286 -12.97775 -12.89479 -12.75997 -12.56002 -12.48540 -12.04018 -11.85579 -11.51946 -11.45503 -11.40140 -11.28915 -10.48453 -10.39864 -10.17217 -9.92530 -9.78384 -8.44530 -8.43737 -6.21840 0.02634 0.54404 0.77604 1.28266 1.37440 1.45985 1.60209 1.66866 1.82423 1.98976 2.20336 2.32360 2.88699 3.03870 3.11103 3.26140 3.83152 3.93377 4.03147 4.06305 4.07428 4.27630 4.38361 4.44909 4.55961 4.63090 4.65904 4.82576 4.87246 5.01278 5.11307 5.17839 5.36801 5.40707 5.48202 5.57406 5.68414 6.10695 6.17348 6.20741 6.53948 6.97802 7.26958 7.65743 8.61492 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.003402 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.236886 B = 8228.928043 C = 9337.851432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.235 3.765 3 H 0.102 0.898 4 N -0.708 5.708 5 C 0.556 3.444 6 O -0.546 6.546 7 C -0.182 4.182 8 C -0.055 4.055 9 C -0.159 4.159 10 C -0.067 4.067 11 C -0.175 4.175 12 C -0.070 4.070 13 S 0.074 5.926 14 C -0.604 4.604 15 H 0.094 0.906 16 C 0.026 3.974 17 N -0.903 5.903 18 Si 0.991 3.009 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.258 1.258 22 C 0.171 3.829 23 N -0.318 5.318 24 N -0.345 5.345 25 C 0.182 3.818 26 N -0.561 5.561 27 H 0.450 0.550 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.414 0.586 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.276 0.724 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -11.198 -16.611 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.120 0.880 4 N -0.364 5.364 5 C 0.345 3.655 6 O -0.425 6.425 7 C -0.196 4.196 8 C -0.075 4.075 9 C -0.181 4.181 10 C -0.088 4.088 11 C -0.200 4.200 12 C -0.188 4.188 13 S 0.333 5.667 14 C -0.750 4.750 15 H 0.111 0.889 16 C -0.179 4.179 17 N -0.538 5.538 18 Si 0.812 3.188 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.101 4.101 23 N -0.159 5.159 24 N -0.184 5.184 25 C -0.108 4.108 26 N -0.176 5.176 27 H 0.293 0.707 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.253 0.747 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.269 -10.684 -16.916 20.009 hybrid contribution 0.543 1.223 1.366 1.912 sum 0.274 -9.461 -15.550 18.204 Atomic orbital electron populations 1.22142 0.91995 1.03360 1.03669 1.19002 0.95128 0.95209 0.77897 0.88010 1.45574 1.68319 1.14687 1.07785 1.18355 0.77470 0.86096 0.83575 1.90781 1.50674 1.16675 1.84398 1.19401 1.12262 0.95916 0.91985 1.21418 0.94882 0.91294 0.99931 1.21298 1.03446 1.01486 0.91919 1.21536 0.95401 0.92537 0.99345 1.21462 1.04279 0.96417 0.97841 1.22979 0.99033 1.00836 0.95932 1.84777 1.68707 0.98104 1.15085 1.24258 1.43383 1.03139 1.04235 0.88863 1.26098 0.93834 0.94691 1.03323 1.70113 1.38693 1.05611 1.39412 0.85068 0.78407 0.78697 0.76607 1.19212 1.19793 1.18231 1.24609 1.04012 0.92166 0.89308 1.74063 1.16508 1.11737 1.13572 1.74191 1.20365 1.25665 0.98202 1.27458 0.98644 0.83192 1.01494 1.43964 1.49739 1.15603 1.08255 0.70672 0.91436 0.92323 0.88959 0.74701 0.83137 0.81992 0.83209 0.86122 0.91512 0.71210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.47 71.98 0.68 -2.51 16 2 C 0.24 5.53 3.12 44.24 0.14 5.66 16 3 H 0.10 2.53 7.58 -2.39 -0.02 2.51 16 4 N -0.71 -20.31 5.02 -449.35 -2.26 -22.56 16 5 C 0.56 21.40 7.71 86.67 0.67 22.07 16 6 O -0.55 -25.44 13.43 -4.06 -0.05 -25.49 16 7 C -0.18 -7.17 5.89 -19.95 -0.12 -7.29 16 8 C -0.06 -1.64 9.53 22.52 0.21 -1.42 16 9 C -0.16 -4.22 10.02 22.27 0.22 -4.00 16 10 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 11 C -0.17 -7.32 9.22 22.40 0.21 -7.11 16 12 C -0.07 -3.27 6.14 23.04 0.14 -3.12 16 13 S 0.07 4.22 18.56 -56.49 -1.05 3.17 16 14 C -0.60 -34.94 9.00 67.96 0.61 -34.33 16 15 H 0.09 5.11 4.98 -2.91 -0.01 5.10 16 16 C 0.03 1.50 5.49 84.87 0.47 1.96 16 17 N -0.90 -54.51 13.22 21.65 0.29 -54.22 16 18 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 C 0.17 3.49 7.26 137.97 1.00 4.49 16 23 N -0.32 -8.03 11.48 -50.16 -0.58 -8.60 16 24 N -0.35 -7.84 12.21 -59.99 -0.73 -8.58 16 25 C 0.18 2.19 13.19 180.11 2.37 4.57 16 26 N -0.56 -6.60 6.20 -189.86 -1.18 -7.77 16 27 H 0.45 1.83 8.96 -92.71 -0.83 1.00 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.41 10.61 6.06 -92.71 -0.56 10.05 16 32 H 0.15 3.37 6.40 -2.91 -0.02 3.35 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.12 5.43 5.04 -2.91 -0.01 5.42 16 36 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.27 0.12 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -83.22 332.99 3.07 -80.15 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.24 Total: 21.19 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 6.83 Total: -22.91 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.45 Total: -101.74 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.05 Total: 3.17 kcal Total: -83.22 3.07 -80.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227766118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.117 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds