Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47226 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46976 * 120.00105 * 3 2 1 6 6 H 1.48497 * 109.47030 * 239.99688 * 3 2 1 7 7 C 1.38816 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99572 * 201.93536 * 7 2 1 9 9 N 1.36934 * 120.00007 * 21.94707 * 7 2 1 10 10 C 1.46501 * 120.00560 * 34.85936 * 9 7 2 11 11 C 1.50696 * 109.47161 * 89.99901 * 10 9 7 12 12 C 1.33693 * 122.07302 * 95.00323 * 11 10 9 13 13 S 1.76255 * 108.22777 * 180.02562 * 12 11 10 14 14 C 1.76175 * 89.83725 * 0.02562 * 13 12 11 15 15 C 1.47853 * 125.47487 * 179.97438 * 14 13 12 16 16 C 1.39564 * 120.11866 * 179.75146 * 15 14 13 17 17 C 1.37915 * 119.87773 * 179.74418 * 16 15 14 18 18 C 1.38578 * 120.12002 * 0.51178 * 17 16 15 19 19 F 1.35102 * 119.88617 * 179.74352 * 18 17 16 20 20 C 1.38586 * 120.23365 * 359.76019 * 18 17 16 21 21 C 1.37914 * 120.11747 * 359.97438 * 20 18 17 22 22 N 1.30237 * 109.05409 * 359.73918 * 14 13 12 23 23 C 1.46505 * 119.99658 * 214.86393 * 9 7 2 24 24 C 1.52994 * 117.49722 * 12.21452 * 23 9 7 25 25 C 1.53003 * 117.49664 * 303.55506 * 23 9 7 26 26 H 0.97001 * 119.99869 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47164 * 210.00775 * 10 9 7 28 28 H 1.09007 * 109.46595 * 330.00235 * 10 9 7 29 29 H 1.08001 * 125.88974 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.05851 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.93552 * 180.25245 * 17 16 15 32 32 H 1.08004 * 119.94080 * 179.97438 * 20 18 17 33 33 H 1.08005 * 120.05616 * 180.02562 * 21 20 18 34 34 H 1.08997 * 115.54918 * 157.89214 * 23 9 7 35 35 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 36 36 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 37 37 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 38 38 H 1.08997 * 117.49884 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0315 -1.2360 0.3500 9 7 1.3998 -2.3453 -0.4422 10 6 0.4391 -2.2823 -1.5465 11 6 1.1649 -2.4641 -2.8546 12 6 1.2677 -3.6569 -3.4496 13 16 2.1815 -3.4512 -4.9427 14 6 2.3377 -1.7294 -4.6040 15 6 3.0388 -0.7471 -5.4581 16 6 3.0899 0.5964 -5.0834 17 6 3.7497 1.5075 -5.8811 18 6 4.3522 1.0932 -7.0583 19 9 4.9929 1.9907 -7.8388 20 6 4.2995 -0.2387 -7.4379 21 6 3.6470 -1.1590 -6.6448 22 7 1.7321 -1.4599 -3.4829 23 6 1.7074 -3.6313 0.1886 24 6 2.4859 -3.6039 1.5054 25 6 3.1728 -4.0705 0.2194 26 1 -0.4850 0.8401 0.0004 27 1 -0.3018 -3.0730 -1.4290 28 1 -0.0596 -1.3130 -1.5392 29 1 0.8610 -4.5863 -3.0793 30 1 2.6168 0.9211 -4.1685 31 1 3.7934 2.5466 -5.5900 32 1 4.7703 -0.5564 -8.3566 33 1 3.6069 -2.1968 -6.9414 34 1 0.9519 -4.4074 0.0665 35 1 2.7689 -2.6292 1.9026 36 1 2.2428 -4.3624 2.2496 37 1 3.3812 -5.1355 0.1180 38 1 3.9078 -3.4028 -0.2300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264259256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = 77.495463 kcal Electronic energy + Delta-G solvation = -23507.716565 eV Core-core repulsion = 19972.190861 eV Total energy + Delta-G solvation = -3535.525704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.99522 -39.52014 -38.54703 -36.89630 -33.61459 -32.08567 -31.29370 -30.54616 -28.76802 -26.04969 -24.75762 -23.59387 -23.12279 -21.42951 -21.34427 -19.93875 -18.89529 -17.92282 -17.45433 -16.31620 -16.10793 -15.95920 -15.68493 -15.37350 -14.54339 -14.47178 -14.06968 -13.88067 -13.66160 -13.53771 -13.32770 -12.90540 -12.64852 -12.23288 -12.21531 -11.83667 -11.50668 -11.13331 -11.05713 -10.80624 -10.70504 -10.64867 -10.16622 -10.04875 -9.70622 -9.50959 -9.31434 -9.23307 -9.13612 -8.76564 -8.43724 -7.78422 -6.63993 -5.86146 -3.40925 0.42837 1.15798 1.62437 1.71969 2.14025 3.28793 3.37095 3.41666 3.46105 3.78850 4.12588 4.23127 4.44541 4.68841 4.75281 4.89793 5.14358 5.22538 5.26414 5.33733 5.45161 5.69918 5.77582 5.83265 5.89995 5.99566 6.00666 6.10704 6.16711 6.23475 6.36014 6.43188 6.51658 6.61730 6.74788 6.83815 6.93413 7.11780 7.50264 7.76577 8.32605 8.48473 9.07415 9.72074 10.24087 11.14072 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004820 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.705688 B = 5807.402221 C = 7291.300143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.024 3.976 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.061 0.939 9 N -0.536 5.536 10 C 0.201 3.799 11 C 0.085 3.915 12 C -0.244 4.244 13 S 0.021 5.979 14 C 0.097 3.903 15 C -0.019 4.019 16 C -0.044 4.044 17 C -0.153 4.153 18 C 0.102 3.898 19 F -0.141 7.141 20 C -0.153 4.153 21 C -0.075 4.075 22 N -0.417 5.417 23 C 0.125 3.875 24 C -0.192 4.192 25 C -0.227 4.227 26 H 0.258 0.742 27 H 0.047 0.953 28 H 0.121 0.879 29 H 0.170 0.830 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -4.103 -12.384 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.176 4.176 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.078 0.922 9 N -0.250 5.250 10 C 0.072 3.928 11 C -0.050 4.050 12 C -0.384 4.384 13 S 0.276 5.724 14 C -0.179 4.179 15 C -0.023 4.023 16 C -0.066 4.066 17 C -0.172 4.172 18 C 0.082 3.918 19 F -0.119 7.119 20 C -0.172 4.172 21 C -0.095 4.095 22 N -0.130 5.130 23 C 0.016 3.984 24 C -0.230 4.230 25 C -0.268 4.268 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.187 0.813 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.539 -4.103 -12.945 14.318 hybrid contribution 0.401 0.875 0.640 1.156 sum 4.940 -3.228 -12.305 13.647 Atomic orbital electron populations 1.69903 1.05623 1.26166 1.50775 1.25002 0.94908 0.98579 0.99146 0.86451 0.79338 0.83147 0.78390 1.21513 1.20909 1.20444 1.18799 0.94569 0.85311 1.39780 0.92157 1.43302 1.48850 1.01655 1.31207 1.19877 0.89438 1.04671 0.78811 1.21849 0.98185 0.86091 0.98865 1.26762 1.09586 1.03270 0.98733 1.84403 1.53814 1.09310 1.24888 1.25716 1.02965 0.93029 0.96150 1.17926 0.98806 0.91929 0.93623 1.21302 0.95081 0.90957 0.99215 1.21144 1.00368 1.01479 0.94171 1.17833 0.96359 0.86999 0.90648 1.91493 1.79491 1.67218 1.73726 1.20927 1.03093 0.91354 1.01845 1.20989 0.96039 0.99698 0.92816 1.66450 1.08026 1.34307 1.04243 1.21131 0.90917 0.90116 0.96219 1.23073 1.06663 1.02217 0.91074 1.23361 1.00724 0.99104 1.03562 0.93243 0.93460 0.86140 0.81283 0.83287 0.84218 0.84343 0.84822 0.89383 0.88237 0.90663 0.90953 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 11.31 55.49 0.63 -23.72 16 2 C 0.02 0.65 4.97 -17.43 -0.09 0.57 16 3 Si 0.90 21.46 29.61 -169.99 -5.03 16.42 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -6.73 8.20 -15.06 -0.12 -6.85 16 8 H 0.06 1.64 7.15 -52.49 -0.38 1.26 16 9 N -0.54 -12.78 2.78 -167.02 -0.46 -13.25 16 10 C 0.20 4.55 5.74 -5.19 -0.03 4.52 16 11 C 0.08 1.73 6.27 -84.40 -0.53 1.20 16 12 C -0.24 -4.18 11.06 29.14 0.32 -3.86 16 13 S 0.02 0.32 22.40 -107.50 -2.41 -2.09 16 14 C 0.10 1.71 7.35 -14.29 -0.11 1.61 16 15 C -0.02 -0.29 5.87 -104.97 -0.62 -0.90 16 16 C -0.04 -0.68 9.68 -39.21 -0.38 -1.06 16 17 C -0.15 -1.99 10.01 -39.57 -0.40 -2.39 16 18 C 0.10 1.26 7.30 -39.33 -0.29 0.97 16 19 F -0.14 -1.74 17.26 2.25 0.04 -1.70 16 20 C -0.15 -1.70 10.01 -39.57 -0.40 -2.10 16 21 C -0.08 -0.92 9.60 -39.21 -0.38 -1.29 16 22 N -0.42 -8.75 10.11 -7.55 -0.08 -8.83 16 23 C 0.13 2.59 6.61 -67.93 -0.45 2.14 16 24 C -0.19 -3.75 9.79 -26.70 -0.26 -4.01 16 25 C -0.23 -4.32 10.14 -26.69 -0.27 -4.59 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 28 H 0.12 3.12 5.33 -51.93 -0.28 2.84 16 29 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.15 2.55 7.82 -52.49 -0.41 2.14 16 31 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.13 1.39 7.30 -52.48 -0.38 1.00 16 34 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 35 H 0.10 2.17 6.82 -51.93 -0.35 1.81 16 36 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -28.34 344.81 -10.41 -38.75 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.31 Total: 5.26 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.98 Total: -16.05 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.09 Total: -45.80 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.41 Total: -2.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.34 -10.41 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264259256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.250 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds