Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47226 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46976 * 120.00105 * 3 2 1 6 6 H 1.48497 * 109.47030 * 239.99688 * 3 2 1 7 7 C 1.38816 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99572 * 201.93536 * 7 2 1 9 9 N 1.36934 * 120.00007 * 21.94707 * 7 2 1 10 10 C 1.46501 * 120.00560 * 34.85936 * 9 7 2 11 11 C 1.50696 * 109.47161 * 89.99901 * 10 9 7 12 12 C 1.33693 * 122.07302 * 95.00323 * 11 10 9 13 13 S 1.76255 * 108.22777 * 180.02562 * 12 11 10 14 14 C 1.76175 * 89.83725 * 0.02562 * 13 12 11 15 15 C 1.47853 * 125.47487 * 179.97438 * 14 13 12 16 16 C 1.39564 * 120.11866 * 179.75146 * 15 14 13 17 17 C 1.37915 * 119.87773 * 179.74418 * 16 15 14 18 18 C 1.38578 * 120.12002 * 0.51178 * 17 16 15 19 19 F 1.35102 * 119.88617 * 179.74352 * 18 17 16 20 20 C 1.38586 * 120.23365 * 359.76019 * 18 17 16 21 21 C 1.37914 * 120.11747 * 359.97438 * 20 18 17 22 22 N 1.30237 * 109.05409 * 359.73918 * 14 13 12 23 23 C 1.46505 * 119.99658 * 214.86393 * 9 7 2 24 24 C 1.52994 * 117.49722 * 12.21452 * 23 9 7 25 25 C 1.53003 * 117.49664 * 303.55506 * 23 9 7 26 26 H 0.97001 * 119.99869 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47164 * 210.00775 * 10 9 7 28 28 H 1.09007 * 109.46595 * 330.00235 * 10 9 7 29 29 H 1.08001 * 125.88974 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.05851 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.93552 * 180.25245 * 17 16 15 32 32 H 1.08004 * 119.94080 * 179.97438 * 20 18 17 33 33 H 1.08005 * 120.05616 * 180.02562 * 21 20 18 34 34 H 1.08997 * 115.54918 * 157.89214 * 23 9 7 35 35 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 36 36 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 37 37 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 38 38 H 1.08997 * 117.49884 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0315 -1.2360 0.3500 9 7 1.3998 -2.3453 -0.4422 10 6 0.4391 -2.2823 -1.5465 11 6 1.1649 -2.4641 -2.8546 12 6 1.2677 -3.6569 -3.4496 13 16 2.1815 -3.4512 -4.9427 14 6 2.3377 -1.7294 -4.6040 15 6 3.0388 -0.7471 -5.4581 16 6 3.0899 0.5964 -5.0834 17 6 3.7497 1.5075 -5.8811 18 6 4.3522 1.0932 -7.0583 19 9 4.9929 1.9907 -7.8388 20 6 4.2995 -0.2387 -7.4379 21 6 3.6470 -1.1590 -6.6448 22 7 1.7321 -1.4599 -3.4829 23 6 1.7074 -3.6313 0.1886 24 6 2.4859 -3.6039 1.5054 25 6 3.1728 -4.0705 0.2194 26 1 -0.4850 0.8401 0.0004 27 1 -0.3018 -3.0730 -1.4290 28 1 -0.0596 -1.3130 -1.5392 29 1 0.8610 -4.5863 -3.0793 30 1 2.6168 0.9211 -4.1685 31 1 3.7934 2.5466 -5.5900 32 1 4.7703 -0.5564 -8.3566 33 1 3.6069 -2.1968 -6.9414 34 1 0.9519 -4.4074 0.0665 35 1 2.7689 -2.6292 1.9026 36 1 2.2428 -4.3624 2.2496 37 1 3.3812 -5.1355 0.1180 38 1 3.9078 -3.4028 -0.2300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264259256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = 63.925133 kcal Electronic energy + Delta-G solvation = -23508.305019 eV Core-core repulsion = 19972.190861 eV Total energy + Delta-G solvation = -3536.114158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.98067 -40.81501 -39.74309 -38.52705 -35.35603 -33.52755 -32.33057 -32.15216 -30.18424 -27.74601 -26.23909 -25.13691 -24.16118 -22.97407 -22.57270 -21.68283 -20.25178 -19.13333 -18.64747 -18.09748 -17.35011 -17.13489 -16.96235 -16.66906 -16.30907 -15.76073 -15.63435 -15.42509 -14.82896 -14.66190 -14.55946 -14.42286 -13.94347 -13.63283 -13.40632 -13.28187 -13.17210 -12.86495 -12.71917 -12.54327 -12.21123 -12.13339 -12.01427 -11.76449 -11.46155 -10.98388 -10.63787 -10.48505 -10.39532 -10.23717 -10.01126 -9.01987 -8.53419 -7.83795 -5.42634 -0.74860 0.15334 0.41620 0.44906 0.79284 1.39163 1.43496 1.49486 1.97744 2.48088 2.62638 3.02003 3.14190 3.17862 3.46839 3.59841 3.69735 3.81454 4.03979 4.14765 4.27968 4.30278 4.40091 4.46369 4.54573 4.64016 4.78895 4.85641 4.91302 4.92605 4.99368 5.04950 5.08235 5.27569 5.33540 5.40987 5.52796 5.62286 5.71468 5.74211 6.42682 7.05520 7.13526 7.83589 8.30469 9.10535 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004820 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.705688 B = 5807.402221 C = 7291.300143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.017 4.017 3 Si 0.940 3.060 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.043 0.957 9 N -0.553 5.553 10 C 0.205 3.795 11 C 0.057 3.943 12 C -0.243 4.243 13 S 0.111 5.889 14 C 0.080 3.920 15 C -0.042 4.042 16 C -0.065 4.065 17 C -0.154 4.154 18 C 0.103 3.897 19 F -0.138 7.138 20 C -0.137 4.137 21 C -0.064 4.064 22 N -0.471 5.471 23 C 0.106 3.894 24 C -0.191 4.191 25 C -0.206 4.206 26 H 0.252 0.748 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.195 0.805 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -6.482 -14.787 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.061 0.939 9 N -0.268 5.268 10 C 0.076 3.924 11 C -0.077 4.077 12 C -0.383 4.383 13 S 0.367 5.633 14 C -0.195 4.195 15 C -0.046 4.046 16 C -0.086 4.086 17 C -0.173 4.173 18 C 0.083 3.917 19 F -0.116 7.116 20 C -0.155 4.155 21 C -0.085 4.085 22 N -0.185 5.185 23 C -0.003 4.003 24 C -0.230 4.230 25 C -0.247 4.247 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.212 0.788 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.194 0.806 33 H 0.176 0.824 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.982 -6.503 -15.362 17.721 hybrid contribution 0.032 1.538 1.234 1.972 sum 6.014 -4.965 -14.128 16.137 Atomic orbital electron populations 1.70007 1.06387 1.26002 1.52706 1.25460 0.95440 1.00537 1.00031 0.85777 0.78391 0.80952 0.78014 1.21470 1.20517 1.20994 1.18746 0.93775 0.86694 1.38748 0.93904 1.43417 1.48910 1.02061 1.32462 1.19599 0.89646 1.03054 0.80083 1.21425 0.99857 0.87471 0.98978 1.27057 1.08718 1.03004 0.99488 1.83947 1.51425 1.05851 1.22089 1.26138 1.02330 0.95471 0.95552 1.18109 1.00128 0.91482 0.94896 1.21096 0.96570 0.92010 0.98953 1.21206 1.00028 1.01687 0.94405 1.17917 0.95905 0.87708 0.90167 1.91506 1.79338 1.67322 1.73481 1.21291 1.01547 0.90229 1.02469 1.21197 0.94866 1.01079 0.91314 1.66372 1.10061 1.35810 1.06238 1.21433 0.92440 0.89485 0.96898 1.23068 1.06488 1.01722 0.91682 1.23270 0.98708 1.00389 1.02314 0.93862 0.92056 0.90003 0.78787 0.86510 0.83208 0.80621 0.82384 0.86860 0.91309 0.87520 0.87441 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.58 11.31 21.65 0.24 -52.33 16 2 C -0.02 -0.93 4.97 84.86 0.42 -0.51 16 3 Si 0.94 46.22 29.61 68.60 2.03 48.25 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.25 -13.70 8.20 84.03 0.69 -13.01 16 8 H 0.04 2.45 7.15 -2.91 -0.02 2.43 16 9 N -0.55 -26.99 2.78 -682.34 -1.90 -28.89 16 10 C 0.21 9.54 5.74 85.63 0.49 10.04 16 11 C 0.06 2.35 6.27 41.60 0.26 2.61 16 12 C -0.24 -7.88 11.06 66.79 0.74 -7.14 16 13 S 0.11 3.02 22.40 -56.49 -1.27 1.75 16 14 C 0.08 2.79 7.35 87.48 0.64 3.43 16 15 C -0.04 -1.26 5.87 -20.09 -0.12 -1.38 16 16 C -0.06 -2.05 9.68 22.51 0.22 -1.83 16 17 C -0.15 -3.99 10.01 22.27 0.22 -3.77 16 18 C 0.10 2.32 7.30 22.43 0.16 2.48 16 19 F -0.14 -3.05 17.26 44.97 0.78 -2.28 16 20 C -0.14 -2.53 10.01 22.28 0.22 -2.31 16 21 C -0.06 -1.38 9.60 22.51 0.22 -1.16 16 22 N -0.47 -20.38 10.11 -177.81 -1.80 -22.17 16 23 C 0.11 4.28 6.61 44.99 0.30 4.57 16 24 C -0.19 -7.31 9.79 30.62 0.30 -7.01 16 25 C -0.21 -7.54 10.14 30.62 0.31 -7.23 16 26 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.06 2.55 7.99 -2.39 -0.02 2.53 16 28 H 0.08 4.49 5.33 -2.38 -0.01 4.48 16 29 H 0.20 5.11 8.06 -2.91 -0.02 5.08 16 30 H 0.12 4.41 7.82 -2.91 -0.02 4.39 16 31 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.16 2.56 7.30 -2.91 -0.02 2.54 16 34 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 35 H 0.07 3.06 6.82 -2.39 -0.02 3.05 16 36 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.32 344.81 4.26 -61.06 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.09 Total: 16.86 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 5.08 Total: -22.24 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.45 Total: -103.40 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.27 Total: 1.75 kcal Total: -65.32 4.26 -61.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264259256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.987 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds