Wall clock time and date at job start Tue Mar 31 2020 12:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47003 * 299.59017 * 3 2 1 5 5 N 1.46903 * 109.47031 * 183.37605 * 4 3 2 6 6 C 1.46902 * 111.00248 * 302.05985 * 5 4 3 7 7 C 1.50697 * 109.47274 * 291.50458 * 6 5 4 8 8 H 1.08003 * 119.99873 * 1.72978 * 7 6 5 9 9 C 1.37878 * 120.00008 * 181.74274 * 7 6 5 10 10 N 1.31509 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99634 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47381 * 89.99875 * 11 9 7 13 13 H 1.48507 * 109.46810 * 209.99611 * 11 9 7 14 14 H 1.48492 * 109.47448 * 329.99283 * 11 9 7 15 15 C 1.46899 * 110.99876 * 66.01196 * 5 4 3 16 16 C 1.50709 * 109.46906 * 76.33807 * 15 5 4 17 17 C 1.35118 * 126.40696 * 93.94500 * 16 15 5 18 18 N 1.33499 * 108.61720 * 180.02562 * 17 16 15 19 19 C 1.32574 * 109.16063 * 0.02562 * 18 17 16 20 20 C 1.40928 * 132.31136 * 180.02562 * 19 18 17 21 21 C 1.36011 * 119.35392 * 180.02562 * 20 19 18 22 22 C 1.40553 * 119.68749 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 119.86536 * 179.97438 * 22 21 20 24 24 C 1.35041 * 120.27295 * 359.97438 * 22 21 20 25 25 N 1.36546 * 120.59306 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.46854 * 179.59220 * 3 2 1 27 27 H 1.09002 * 109.47480 * 59.59472 * 3 2 1 28 28 H 1.08999 * 109.47019 * 63.37994 * 4 3 2 29 29 H 1.09000 * 109.47352 * 303.37737 * 4 3 2 30 30 H 1.09003 * 109.46603 * 51.50405 * 6 5 4 31 31 H 1.08992 * 109.47128 * 171.49764 * 6 5 4 32 32 H 0.96995 * 119.99870 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47372 * 316.34199 * 15 5 4 34 34 H 1.08999 * 109.47279 * 196.33634 * 15 5 4 35 35 H 1.08001 * 125.68838 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.32689 * 0.02562 * 20 19 18 37 37 H 1.07996 * 120.16081 * 180.27047 * 21 20 19 38 38 H 1.08007 * 119.70416 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.7114 1.2544 5 7 4.5850 -0.6402 1.2954 6 6 5.1751 -1.2406 0.0914 7 6 4.9403 -2.7291 0.1056 8 1 4.3819 -3.1800 0.9127 9 6 5.4385 -3.5153 -0.9116 10 7 6.1181 -2.9661 -1.8945 11 14 5.1480 -5.3604 -0.8936 12 1 3.8839 -5.6696 -1.6092 13 1 6.2792 -6.0462 -1.5685 14 1 5.0499 -5.8324 0.5109 15 6 5.0401 0.7455 1.4697 16 6 4.8463 1.1610 2.9054 17 6 5.7675 1.0925 3.8914 18 7 5.2197 1.5510 5.0192 19 6 3.9668 1.9119 4.7789 20 6 2.9599 2.4509 5.6045 21 6 1.7394 2.7290 5.0725 22 6 1.4993 2.4754 3.7111 23 17 -0.0569 2.8280 3.0274 24 6 2.4743 1.9586 2.9326 25 7 3.7037 1.6752 3.4549 26 1 2.9708 1.0285 -0.0073 27 1 2.9716 -0.5193 -0.8863 28 1 2.8057 -1.7554 1.2321 29 1 2.7061 -0.2276 2.1399 30 1 4.7111 -0.8079 -0.7949 31 1 6.2466 -1.0418 0.0743 32 1 6.4682 -3.5192 -2.6103 33 1 4.4616 1.4025 0.8202 34 1 6.0964 0.8164 1.2104 35 1 6.7785 0.7276 3.7849 36 1 3.1554 2.6413 6.6495 37 1 0.9597 3.1464 5.6923 38 1 2.2799 1.7678 1.8875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272423183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:24 Heat of formation + Delta-G solvation = 122.118481 kcal Electronic energy + Delta-G solvation = -24011.173395 eV Core-core repulsion = 20495.458946 eV Total energy + Delta-G solvation = -3515.714450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92608 -38.14779 -37.91631 -36.42401 -36.06956 -33.84376 -32.73461 -31.25571 -30.15074 -29.41559 -27.15129 -25.48067 -24.05583 -23.47557 -22.55185 -21.31683 -20.00588 -17.86977 -17.40365 -17.07766 -16.56295 -16.27317 -16.17890 -15.59041 -14.90040 -14.63282 -14.30429 -14.02099 -13.80238 -13.62750 -13.46575 -13.12467 -13.02754 -12.53492 -12.27081 -12.16190 -12.10846 -11.72178 -11.51560 -11.39974 -11.29932 -11.20606 -10.95840 -10.83471 -10.73493 -10.45929 -10.09778 -10.03020 -9.42783 -8.76176 -8.57417 -7.86356 -7.59079 -6.16792 -4.18669 0.47013 1.03803 1.54401 2.64486 2.78317 2.92241 2.95063 3.25142 3.32888 3.36793 3.37932 4.07236 4.12555 4.28816 4.32734 4.42470 4.66623 4.81989 4.97918 5.02815 5.18175 5.21955 5.24702 5.42552 5.44854 5.53713 5.60800 5.72237 5.83154 5.98944 6.03924 6.26697 6.37652 6.64529 6.90064 6.95472 7.02545 7.58589 7.69357 7.79856 7.83699 7.92835 8.28060 8.88261 9.47073 10.93373 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.004295 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.601212 B = 6517.911925 C = 7886.901329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.213 3.787 3 C -0.079 4.079 4 C 0.068 3.932 5 N -0.520 5.520 6 C 0.186 3.814 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.118 3.882 16 C -0.026 4.026 17 C 0.050 3.950 18 N -0.483 5.483 19 C 0.207 3.793 20 C -0.057 4.057 21 C -0.105 4.105 22 C -0.066 4.066 23 Cl -0.039 7.039 24 C 0.074 3.926 25 N -0.354 5.354 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.003 0.997 31 H 0.039 0.961 32 H 0.263 0.737 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.185 0.815 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 13.271 9.619 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.105 4.105 3 C -0.121 4.121 4 C -0.062 4.062 5 N -0.242 5.242 6 C 0.062 3.938 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.011 4.011 16 C -0.139 4.139 17 C -0.101 4.101 18 N -0.203 5.203 19 C -0.035 4.035 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.096 4.096 23 Cl -0.010 7.010 24 C -0.049 4.049 25 N -0.028 5.028 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.202 0.798 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.638 12.987 10.489 17.965 hybrid contribution -0.502 -0.691 -1.762 1.958 sum -7.140 12.295 8.726 16.682 Atomic orbital electron populations 1.81169 1.12870 1.09018 1.09095 1.29209 0.95232 0.93041 0.93027 1.20291 0.81833 1.03944 1.06033 1.22161 0.89298 1.02102 0.92651 1.62428 1.04963 1.13474 1.43370 1.19948 0.95240 0.94805 0.83768 1.21080 1.34819 0.91383 1.07682 0.91796 1.24925 0.95025 0.98812 0.95401 1.69921 1.36296 1.35838 1.11431 0.86544 0.77740 0.85149 0.78332 1.20742 1.21197 1.19716 1.20629 1.02598 0.91029 0.86858 1.21513 0.85016 1.08424 0.98964 1.22349 1.00280 1.00553 0.86930 1.70757 1.03898 1.18271 1.27349 1.20914 0.94512 1.05749 0.82373 1.20188 0.89653 0.97987 0.99930 1.20840 0.97762 1.01535 0.92787 1.20032 0.88730 1.06597 0.94230 1.98410 1.24493 1.93460 1.84682 1.21244 0.83426 1.00139 1.00123 1.42642 1.08690 1.40530 1.10900 0.88678 0.85111 0.88545 0.92683 0.97940 0.94339 0.92754 0.94176 0.87679 0.79754 0.82446 0.83299 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.42 18.54 42.15 0.78 -6.64 16 2 C 0.21 3.16 15.24 -20.76 -0.32 2.85 16 3 C -0.08 -1.09 4.23 -29.52 -0.13 -1.21 16 4 C 0.07 1.08 4.75 -3.82 -0.02 1.06 16 5 N -0.52 -8.97 4.60 -237.51 -1.09 -10.06 16 6 C 0.19 3.94 4.47 -4.98 -0.02 3.92 16 7 C -0.51 -12.59 8.60 -34.44 -0.30 -12.88 16 8 H 0.06 1.60 7.20 -52.48 -0.38 1.22 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -24.09 13.29 55.43 0.74 -23.35 16 11 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.12 1.65 5.32 -4.97 -0.03 1.63 16 16 C -0.03 -0.37 6.07 -81.47 -0.49 -0.87 16 17 C 0.05 0.72 11.75 -17.94 -0.21 0.51 16 18 N -0.48 -7.38 11.32 -12.79 -0.14 -7.53 16 19 C 0.21 2.87 7.81 -156.06 -1.22 1.65 16 20 C -0.06 -0.60 10.10 -39.36 -0.40 -1.00 16 21 C -0.11 -0.99 9.86 -39.51 -0.39 -1.38 16 22 C -0.07 -0.72 6.28 -39.85 -0.25 -0.97 16 23 Cl -0.04 -0.42 28.94 -51.86 -1.50 -1.92 16 24 C 0.07 0.91 8.73 -16.59 -0.14 0.76 16 25 N -0.35 -4.82 2.77 -58.43 -0.16 -4.98 16 26 H 0.10 1.08 5.54 -51.93 -0.29 0.79 16 27 H 0.13 2.00 6.38 -51.93 -0.33 1.67 16 28 H 0.10 1.72 7.05 -51.93 -0.37 1.35 16 29 H 0.05 0.82 4.96 -51.93 -0.26 0.57 16 30 H 0.00 0.06 5.90 -51.93 -0.31 -0.24 16 31 H 0.04 0.88 7.76 -51.93 -0.40 0.48 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.04 0.50 5.88 -51.93 -0.31 0.19 16 34 H 0.11 1.41 7.69 -51.93 -0.40 1.01 16 35 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.16 1.91 5.67 -52.48 -0.30 1.61 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.07 335.49 -9.09 -38.15 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.73 Total: 0.46 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.01 Total: -4.49 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.12 Total: -52.56 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.07 -9.09 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272423183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.273 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds