Wall clock time and date at job start Tue Mar 31 2020 12:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47003 * 299.59017 * 3 2 1 5 5 N 1.46903 * 109.47031 * 183.37605 * 4 3 2 6 6 C 1.46902 * 111.00248 * 302.05985 * 5 4 3 7 7 C 1.50697 * 109.47274 * 291.50458 * 6 5 4 8 8 H 1.08003 * 119.99873 * 1.72978 * 7 6 5 9 9 C 1.37878 * 120.00008 * 181.74274 * 7 6 5 10 10 N 1.31509 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99634 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47381 * 89.99875 * 11 9 7 13 13 H 1.48507 * 109.46810 * 209.99611 * 11 9 7 14 14 H 1.48492 * 109.47448 * 329.99283 * 11 9 7 15 15 C 1.46899 * 110.99876 * 66.01196 * 5 4 3 16 16 C 1.50709 * 109.46906 * 76.33807 * 15 5 4 17 17 C 1.35118 * 126.40696 * 93.94500 * 16 15 5 18 18 N 1.33499 * 108.61720 * 180.02562 * 17 16 15 19 19 C 1.32574 * 109.16063 * 0.02562 * 18 17 16 20 20 C 1.40928 * 132.31136 * 180.02562 * 19 18 17 21 21 C 1.36011 * 119.35392 * 180.02562 * 20 19 18 22 22 C 1.40553 * 119.68749 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 119.86536 * 179.97438 * 22 21 20 24 24 C 1.35041 * 120.27295 * 359.97438 * 22 21 20 25 25 N 1.36546 * 120.59306 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.46854 * 179.59220 * 3 2 1 27 27 H 1.09002 * 109.47480 * 59.59472 * 3 2 1 28 28 H 1.08999 * 109.47019 * 63.37994 * 4 3 2 29 29 H 1.09000 * 109.47352 * 303.37737 * 4 3 2 30 30 H 1.09003 * 109.46603 * 51.50405 * 6 5 4 31 31 H 1.08992 * 109.47128 * 171.49764 * 6 5 4 32 32 H 0.96995 * 119.99870 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47372 * 316.34199 * 15 5 4 34 34 H 1.08999 * 109.47279 * 196.33634 * 15 5 4 35 35 H 1.08001 * 125.68838 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.32689 * 0.02562 * 20 19 18 37 37 H 1.07996 * 120.16081 * 180.27047 * 21 20 19 38 38 H 1.08007 * 119.70416 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.7114 1.2544 5 7 4.5850 -0.6402 1.2954 6 6 5.1751 -1.2406 0.0914 7 6 4.9403 -2.7291 0.1056 8 1 4.3819 -3.1800 0.9127 9 6 5.4385 -3.5153 -0.9116 10 7 6.1181 -2.9661 -1.8945 11 14 5.1480 -5.3604 -0.8936 12 1 3.8839 -5.6696 -1.6092 13 1 6.2792 -6.0462 -1.5685 14 1 5.0499 -5.8324 0.5109 15 6 5.0401 0.7455 1.4697 16 6 4.8463 1.1610 2.9054 17 6 5.7675 1.0925 3.8914 18 7 5.2197 1.5510 5.0192 19 6 3.9668 1.9119 4.7789 20 6 2.9599 2.4509 5.6045 21 6 1.7394 2.7290 5.0725 22 6 1.4993 2.4754 3.7111 23 17 -0.0569 2.8280 3.0274 24 6 2.4743 1.9586 2.9326 25 7 3.7037 1.6752 3.4549 26 1 2.9708 1.0285 -0.0073 27 1 2.9716 -0.5193 -0.8863 28 1 2.8057 -1.7554 1.2321 29 1 2.7061 -0.2276 2.1399 30 1 4.7111 -0.8079 -0.7949 31 1 6.2466 -1.0418 0.0743 32 1 6.4682 -3.5192 -2.6103 33 1 4.4616 1.4025 0.8202 34 1 6.0964 0.8164 1.2104 35 1 6.7785 0.7276 3.7849 36 1 3.1554 2.6413 6.6495 37 1 0.9597 3.1464 5.6923 38 1 2.2799 1.7678 1.8875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272423183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:23 Heat of formation + Delta-G solvation = 106.581650 kcal Electronic energy + Delta-G solvation = -24011.847123 eV Core-core repulsion = 20495.458946 eV Total energy + Delta-G solvation = -3516.388177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.92076 -39.43798 -38.85882 -37.43031 -37.24553 -34.99394 -34.44466 -32.42004 -31.22048 -30.63097 -28.63918 -26.67959 -25.43217 -24.64601 -23.53392 -22.54538 -21.27775 -19.08925 -18.47918 -18.19562 -18.02070 -17.39389 -17.22447 -16.78976 -16.40897 -15.90104 -15.51081 -15.29164 -15.10723 -14.67952 -14.61970 -14.19995 -14.04448 -13.84466 -13.59683 -13.49078 -13.20252 -13.01453 -12.89527 -12.82055 -12.60310 -12.48534 -12.27507 -12.14661 -11.92498 -11.81262 -11.64784 -11.31239 -11.10221 -10.52135 -9.73434 -9.04247 -8.81296 -8.12705 -6.18462 -0.41501 0.11125 0.65148 1.43656 1.47398 1.55409 1.67188 1.69387 1.72776 1.77728 2.42193 2.45779 2.90078 3.17869 3.22250 3.36631 3.42556 3.55572 3.79999 3.90906 4.02351 4.08613 4.15535 4.28344 4.42678 4.53637 4.68204 4.79129 4.81716 4.90904 4.98885 5.09994 5.31702 5.35510 5.39032 5.62175 5.73254 5.93554 6.12257 6.28033 6.51457 6.60200 6.80691 6.95778 7.50135 8.96409 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.004295 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.601212 B = 6517.911925 C = 7886.901329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.231 3.769 3 C -0.067 4.067 4 C 0.074 3.926 5 N -0.530 5.530 6 C 0.200 3.800 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.016 3.984 10 N -0.925 5.925 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.123 3.877 16 C -0.040 4.040 17 C 0.039 3.961 18 N -0.513 5.513 19 C 0.198 3.802 20 C -0.063 4.063 21 C -0.090 4.090 22 C -0.061 4.061 23 Cl -0.034 7.034 24 C 0.056 3.944 25 N -0.355 5.355 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.002 0.998 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 14.345 10.657 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.056 4.056 5 N -0.253 5.253 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.183 4.183 10 N -0.566 5.566 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.005 4.005 16 C -0.153 4.153 17 C -0.112 4.112 18 N -0.233 5.233 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.114 4.114 22 C -0.091 4.091 23 Cl -0.006 7.006 24 C -0.068 4.068 25 N -0.029 5.029 26 H 0.143 0.857 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.020 0.980 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.212 0.788 36 H 0.202 0.798 37 H 0.201 0.799 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.892 14.066 11.533 19.828 hybrid contribution -0.210 -0.946 -1.989 2.213 sum -8.101 13.120 9.543 18.134 Atomic orbital electron populations 1.81188 1.13684 1.10109 1.09946 1.29233 0.95137 0.92080 0.92161 1.20193 0.81081 1.05268 1.04359 1.22017 0.88506 1.01042 0.94019 1.62232 1.05722 1.15886 1.41450 1.19598 0.94247 0.93305 0.85318 1.21404 1.33690 0.93401 1.06870 0.92654 1.25546 0.95236 1.02085 0.95445 1.70003 1.37580 1.36882 1.12087 0.85738 0.77504 0.81415 0.78079 1.20490 1.21196 1.19708 1.20598 1.03128 0.89298 0.87497 1.21377 0.85518 1.09646 0.98770 1.22621 1.00992 1.00567 0.87027 1.70731 1.04951 1.19751 1.27885 1.21490 0.94763 1.05409 0.82872 1.20577 0.89128 0.97644 1.00908 1.21221 0.98074 0.99860 0.92248 1.20263 0.88522 1.05429 0.94885 1.98421 1.24058 1.93317 1.84756 1.21391 0.83363 1.01400 1.00631 1.42666 1.08878 1.40401 1.10929 0.85713 0.86303 0.90994 0.91590 0.98001 0.96296 0.92881 0.92157 0.87300 0.78788 0.79844 0.79932 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.17 18.54 20.00 0.37 -14.80 16 2 C 0.23 6.57 15.24 89.44 1.36 7.93 16 3 C -0.07 -1.77 4.23 28.79 0.12 -1.65 16 4 C 0.07 2.29 4.75 86.30 0.41 2.70 16 5 N -0.53 -18.11 4.60 -905.34 -4.16 -22.27 16 6 C 0.20 8.52 4.47 85.56 0.38 8.90 16 7 C -0.52 -25.55 8.60 25.60 0.22 -25.33 16 8 H 0.06 2.79 7.20 -2.91 -0.02 2.77 16 9 C 0.02 0.81 5.46 84.66 0.46 1.27 16 10 N -0.92 -50.12 13.29 21.45 0.28 -49.84 16 11 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 C 0.12 3.34 5.32 85.56 0.46 3.80 16 16 C -0.04 -1.11 6.07 41.06 0.25 -0.86 16 17 C 0.04 1.11 11.75 83.72 0.98 2.09 16 18 N -0.51 -15.33 11.32 -194.36 -2.20 -17.53 16 19 C 0.20 5.17 7.81 134.11 1.05 6.22 16 20 C -0.06 -1.14 10.10 22.41 0.23 -0.92 16 21 C -0.09 -1.40 9.86 22.32 0.22 -1.18 16 22 C -0.06 -1.18 6.28 22.10 0.14 -1.04 16 23 Cl -0.03 -0.65 28.94 -2.72 -0.08 -0.73 16 24 C 0.06 1.24 8.73 83.22 0.73 1.97 16 25 N -0.36 -9.17 2.77 -338.76 -0.94 -10.11 16 26 H 0.13 2.54 5.54 -2.39 -0.01 2.53 16 27 H 0.12 3.54 6.38 -2.39 -0.02 3.53 16 28 H 0.07 2.57 7.05 -2.39 -0.02 2.55 16 29 H 0.07 1.90 4.96 -2.39 -0.01 1.89 16 30 H 0.00 0.10 5.90 -2.39 -0.01 0.09 16 31 H 0.02 0.88 7.76 -2.39 -0.02 0.86 16 32 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.06 1.38 5.88 -2.38 -0.01 1.36 16 34 H 0.11 2.86 7.69 -2.39 -0.02 2.84 16 35 H 0.20 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.17 3.53 5.67 -2.91 -0.02 3.51 16 Total: -1.00 -62.01 335.49 3.43 -58.58 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.12 Total: 8.92 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 7.01 Total: 3.93 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -6.64 Total: -114.55 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -62.01 3.43 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272423183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.160 kcal (2) G-P(sol) polarization free energy of solvation -62.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds