Wall clock time and date at job start Tue Mar 31 2020 12:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08995 * 109.47577 * 24.99651 * 18 17 14 20 20 C 1.53007 * 109.46809 * 264.99870 * 18 17 14 21 21 C 1.50696 * 109.47161 * 144.99819 * 18 17 14 22 22 C 1.33390 * 125.20584 * 219.71595 * 21 18 17 23 23 C 1.38420 * 114.92238 * 179.86231 * 22 21 18 24 24 C 1.33388 * 114.92341 * 0.42721 * 23 22 21 25 25 S 1.75887 * 109.59314 * 359.77563 * 24 23 22 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 34 34 H 1.09003 * 109.46997 * 299.99573 * 20 18 17 35 35 H 1.08999 * 109.47322 * 60.00066 * 20 18 17 36 36 H 1.08998 * 109.47069 * 180.02562 * 20 18 17 37 37 H 1.08001 * 122.53530 * 0.02562 * 22 21 18 38 38 H 1.08006 * 122.54132 * 180.20011 * 23 22 21 39 39 H 1.07998 * 125.20784 * 179.79399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 1.6298 -1.0082 4.3935 20 6 -0.2414 -0.2188 3.6747 21 6 1.0279 0.6219 5.6322 22 6 1.0732 -0.0139 6.8039 23 6 0.9403 0.8007 7.9151 24 6 0.7781 2.0970 7.6456 25 16 0.7946 2.3440 5.9043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 1.9055 1.7750 3.4681 34 1 -0.7201 0.7541 3.5631 35 1 -0.1522 -0.6942 2.6980 36 1 -0.8440 -0.8465 4.3311 37 1 1.2063 -1.0830 6.8799 38 1 0.9624 0.4154 8.9239 39 1 0.6556 2.8758 8.3837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282951201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:35 Heat of formation + Delta-G solvation = -41.339525 kcal Electronic energy + Delta-G solvation = -23435.884197 eV Core-core repulsion = 20018.276583 eV Total energy + Delta-G solvation = -3417.607614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.38669 -36.71573 -36.32832 -35.76699 -35.24501 -32.59178 -30.45832 -29.11085 -28.45468 -25.61829 -25.15490 -24.43359 -22.10021 -20.84418 -19.86016 -18.53292 -17.87205 -17.23746 -16.76875 -16.22005 -15.57724 -15.40255 -15.02505 -14.40068 -14.06740 -13.52690 -13.47582 -13.34469 -12.88071 -12.83967 -12.74171 -12.33603 -12.16697 -11.93688 -11.78309 -11.57596 -11.45434 -11.37145 -11.25917 -11.18443 -10.97143 -10.80181 -10.77977 -10.46352 -10.28493 -10.03609 -9.55890 -9.24325 -8.80428 -8.60162 -8.45809 -7.99066 -6.07215 -4.13636 0.82228 1.17503 1.48572 1.87422 2.59665 3.28453 3.35733 3.39529 3.47029 4.10486 4.40551 4.44605 4.89380 4.93255 5.09159 5.11156 5.24390 5.30581 5.41549 5.44273 5.61073 5.80126 5.86932 6.06119 6.10926 6.12214 6.21997 6.32919 6.40283 6.60822 6.76596 6.77719 6.99913 7.06959 7.46579 7.63030 7.78872 8.04225 8.27501 8.88611 9.52225 10.98364 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.003829 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.581432 B = 7311.812963 C = 7483.411464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.107 3.893 14 S 2.778 3.222 15 O -0.994 6.994 16 O -0.971 6.971 17 N -1.129 6.129 18 C 0.222 3.778 19 H 0.105 0.895 20 C -0.174 4.174 21 C -0.171 4.171 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.220 4.220 25 S 0.110 5.890 26 H 0.014 0.986 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -0.338 18.227 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.977 6.977 16 O -0.955 6.955 17 N -0.887 5.887 18 C 0.113 3.887 19 H 0.123 0.877 20 C -0.233 4.233 21 C -0.290 4.290 22 C -0.168 4.168 23 C -0.163 4.163 24 C -0.356 4.356 25 S 0.374 5.626 26 H 0.033 0.967 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.871 0.908 17.135 17.590 hybrid contribution -0.078 -1.196 0.175 1.211 sum -3.949 -0.288 17.310 17.757 Atomic orbital electron populations 1.22154 0.98236 0.99684 1.00775 1.18735 0.91280 0.92993 0.80401 0.92341 1.21335 1.31568 1.12979 0.90030 0.91945 1.24900 0.94991 0.94989 0.98986 1.69855 1.36621 1.22646 1.23759 0.86499 0.79288 0.79268 0.82368 1.20695 1.21167 1.19855 1.57694 1.69995 1.19703 1.35723 1.21198 1.01885 0.82208 0.98651 1.02007 0.73594 0.73276 0.72402 1.93542 1.68944 1.60699 1.74555 1.93620 1.74177 1.55973 1.71742 1.56482 1.62172 1.17142 1.52855 1.19162 0.92774 0.93090 0.83699 0.87716 1.22494 0.95131 1.03264 1.02382 1.24754 1.08721 0.96757 0.98800 1.20122 1.04332 1.01567 0.90747 1.20147 1.03448 0.92659 1.00037 1.25642 1.10841 1.00587 0.98486 1.84329 1.71066 1.05894 1.01353 0.96736 0.88937 0.94777 0.92726 0.93128 0.93418 0.90807 0.75680 0.91659 0.89865 0.91388 0.84010 0.84309 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.66 37.16 0.32 -2.90 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -19.68 2.79 -115.85 -0.32 -20.00 16 13 C 0.11 1.80 8.39 59.85 0.50 2.30 16 14 S 2.78 53.94 6.08 -107.50 -0.65 53.28 16 15 O -0.99 -20.40 16.55 -57.17 -0.95 -21.35 16 16 O -0.97 -22.65 16.70 -57.17 -0.95 -23.60 16 17 N -1.13 -17.04 5.52 -5.88 -0.03 -17.07 16 18 C 0.22 2.83 3.36 -69.08 -0.23 2.60 16 19 H 0.11 1.31 7.04 -51.93 -0.37 0.94 16 20 C -0.17 -2.03 9.49 37.16 0.35 -1.68 16 21 C -0.17 -2.01 5.45 -36.00 -0.20 -2.20 16 22 C -0.14 -1.42 10.04 -41.21 -0.41 -1.84 16 23 C -0.13 -1.22 10.18 -41.21 -0.42 -1.64 16 24 C -0.22 -2.03 11.23 29.04 0.33 -1.70 16 25 S 0.11 1.19 22.39 -107.50 -2.41 -1.21 16 26 H 0.01 0.26 7.41 -51.93 -0.38 -0.12 16 27 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 28 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.66 7.35 -51.93 -0.38 0.27 16 32 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 33 H 0.41 5.75 7.96 -34.47 -0.27 5.48 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.07 5.56 -51.93 -0.29 0.78 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.74 341.24 -10.01 -41.75 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.12 Total: 4.25 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.32 Total: -13.30 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.27 Total: -60.94 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.90 Total: -44.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 55.13 SS G_CDS: -3.06 Total: 52.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.74 -10.01 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.410 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds