Wall clock time and date at job start Tue Mar 31 2020 12:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08995 * 109.47577 * 24.99651 * 18 17 14 20 20 C 1.53007 * 109.46809 * 264.99870 * 18 17 14 21 21 C 1.50696 * 109.47161 * 144.99819 * 18 17 14 22 22 C 1.33390 * 125.20584 * 219.71595 * 21 18 17 23 23 C 1.38420 * 114.92238 * 179.86231 * 22 21 18 24 24 C 1.33388 * 114.92341 * 0.42721 * 23 22 21 25 25 S 1.75887 * 109.59314 * 359.77563 * 24 23 22 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 34 34 H 1.09003 * 109.46997 * 299.99573 * 20 18 17 35 35 H 1.08999 * 109.47322 * 60.00066 * 20 18 17 36 36 H 1.08998 * 109.47069 * 180.02562 * 20 18 17 37 37 H 1.08001 * 122.53530 * 0.02562 * 22 21 18 38 38 H 1.08006 * 122.54132 * 180.20011 * 23 22 21 39 39 H 1.07998 * 125.20784 * 179.79399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 1.6298 -1.0082 4.3935 20 6 -0.2414 -0.2188 3.6747 21 6 1.0279 0.6219 5.6322 22 6 1.0732 -0.0139 6.8039 23 6 0.9403 0.8007 7.9151 24 6 0.7781 2.0970 7.6456 25 16 0.7946 2.3440 5.9043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 1.9055 1.7750 3.4681 34 1 -0.7201 0.7541 3.5631 35 1 -0.1522 -0.6942 2.6980 36 1 -0.8440 -0.8465 4.3311 37 1 1.2063 -1.0830 6.8799 38 1 0.9624 0.4154 8.9239 39 1 0.6556 2.8758 8.3837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282951201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:34 Heat of formation + Delta-G solvation = -63.213692 kcal Electronic energy + Delta-G solvation = -23436.832732 eV Core-core repulsion = 20018.276583 eV Total energy + Delta-G solvation = -3418.556149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.24237 -38.33984 -37.94151 -36.92055 -36.87070 -34.51523 -31.50620 -30.88752 -29.30544 -27.26125 -26.97260 -25.26034 -23.03968 -22.58226 -20.92796 -19.82315 -18.91202 -18.71311 -18.51154 -17.83796 -17.05144 -16.55632 -16.29463 -15.90312 -15.22419 -14.97397 -14.90669 -14.62835 -14.29394 -13.90040 -13.71273 -13.55079 -13.40774 -13.27387 -13.22079 -13.12464 -13.00027 -12.94816 -12.76651 -12.56476 -12.51753 -12.37142 -12.18112 -12.09598 -11.87520 -11.57115 -11.12798 -10.73977 -10.48213 -9.67719 -9.57859 -9.39519 -8.09859 -6.22994 -0.39559 0.09346 0.68745 1.11674 1.42718 1.45273 1.54316 1.83503 2.04679 2.44396 2.61197 3.18618 3.38114 3.57665 4.01174 4.11498 4.21075 4.28245 4.37271 4.64429 4.70845 4.73223 4.83066 4.90723 4.99057 5.05026 5.07878 5.18083 5.22088 5.24324 5.34982 5.41244 5.60108 5.64364 5.70228 5.89872 5.95908 6.18622 6.33301 6.84695 7.45904 8.93978 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.003829 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.581432 B = 7311.812963 C = 7483.411464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.023 0.977 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.991 5.991 13 C 0.100 3.900 14 S 2.796 3.204 15 O -1.006 7.006 16 O -1.017 7.017 17 N -1.118 6.118 18 C 0.218 3.782 19 H 0.109 0.891 20 C -0.170 4.170 21 C -0.195 4.195 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.211 4.211 25 S 0.079 5.921 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -1.455 20.134 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.834 5.834 13 C -0.045 4.045 14 S 2.805 3.195 15 O -0.989 6.989 16 O -1.001 7.001 17 N -0.879 5.879 18 C 0.110 3.890 19 H 0.127 0.873 20 C -0.229 4.229 21 C -0.313 4.313 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.346 4.346 25 S 0.342 5.658 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.705 -0.230 19.053 19.626 hybrid contribution 0.182 -0.838 -0.258 0.896 sum -4.523 -1.068 18.795 19.361 Atomic orbital electron populations 1.21927 0.96524 1.00345 1.00567 1.18396 0.92414 0.91183 0.80979 0.95952 1.21663 1.31558 1.12975 0.91486 0.92550 1.25606 0.95279 0.95691 1.01569 1.69975 1.37384 1.23613 1.24253 0.85624 0.78765 0.78425 0.79206 1.19452 1.21127 1.20085 1.57518 1.69877 1.20995 1.34990 1.21425 1.01995 0.80212 1.00915 1.01249 0.73555 0.72419 0.72301 1.93518 1.69649 1.61100 1.74614 1.93554 1.75800 1.57513 1.73225 1.56102 1.62002 1.17650 1.52143 1.19354 0.92801 0.92843 0.84007 0.87303 1.22464 0.94798 1.03451 1.02219 1.24635 1.11116 0.97049 0.98547 1.20457 1.02654 1.02626 0.90558 1.20459 1.02982 0.92468 1.00977 1.25985 1.09708 1.01440 0.97515 1.84443 1.71729 1.06085 1.03519 0.94200 0.91793 0.93570 0.92722 0.93980 0.90105 0.89884 0.75007 0.92033 0.90987 0.88994 0.82388 0.81649 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.66 71.98 0.62 -5.15 16 2 C 0.27 13.21 2.62 44.25 0.12 13.32 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 4 C -0.54 -28.79 8.37 25.60 0.21 -28.58 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.99 16 6 C 0.02 1.00 5.30 84.66 0.45 1.44 16 7 N -0.91 -50.99 11.32 21.45 0.24 -50.75 16 8 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.99 -39.32 2.79 -520.44 -1.45 -40.77 16 13 C 0.10 3.23 8.39 127.77 1.07 4.30 16 14 S 2.80 108.89 6.08 -56.49 -0.34 108.54 16 15 O -1.01 -40.66 16.55 -128.00 -2.12 -42.78 16 16 O -1.02 -48.90 16.70 -128.00 -2.14 -51.04 16 17 N -1.12 -33.19 5.52 -172.51 -0.95 -34.14 16 18 C 0.22 5.20 3.36 44.25 0.15 5.34 16 19 H 0.11 2.48 7.04 -2.39 -0.02 2.46 16 20 C -0.17 -3.64 9.49 71.98 0.68 -2.96 16 21 C -0.19 -4.19 5.45 24.59 0.13 -4.06 16 22 C -0.13 -2.37 10.04 21.22 0.21 -2.15 16 23 C -0.14 -2.11 10.18 21.22 0.22 -1.90 16 24 C -0.21 -3.33 11.23 66.72 0.75 -2.58 16 25 S 0.08 1.61 22.39 -56.49 -1.26 0.35 16 26 H 0.04 1.46 7.41 -2.39 -0.02 1.44 16 27 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 28 H 0.05 1.83 6.66 -2.39 -0.02 1.81 16 29 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.05 7.35 -2.39 -0.02 2.03 16 32 H 0.08 2.52 6.43 -2.39 -0.02 2.51 16 33 H 0.42 11.68 7.96 -96.74 -0.77 10.91 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.71 5.56 -2.39 -0.01 1.69 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -68.62 341.24 -1.08 -69.70 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.30 Total: 18.62 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.62 Total: -22.97 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -2.16 Total: -125.66 kcal Atomic # 8 Polarization: -89.56 SS G_CDS: -4.26 Total: -93.82 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 110.50 SS G_CDS: -1.61 Total: 108.89 kcal Total: -68.62 -1.08 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.483 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds