Wall clock time and date at job start Tue Mar 31 2020 12:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47373 * 2 1 4 4 N 1.46509 * 109.47039 * 119.99270 * 2 1 3 5 5 S 1.65597 * 119.99948 * 262.11102 * 4 2 1 6 6 O 1.42102 * 106.40162 * 179.07877 * 5 4 2 7 7 O 1.42096 * 106.40615 * 312.00041 * 5 4 2 8 8 N 1.65597 * 107.21998 * 65.53952 * 5 4 2 9 9 C 1.46499 * 120.00113 * 266.14942 * 8 5 4 10 10 C 1.46503 * 120.00207 * 86.14047 * 8 5 4 11 11 H 1.08995 * 109.46917 * 354.31772 * 10 8 5 12 12 C 1.53005 * 109.46854 * 114.31303 * 10 8 5 13 13 C 1.50697 * 109.47242 * 234.31563 * 10 8 5 14 14 H 1.08002 * 120.00421 * 0.02562 * 13 10 8 15 15 C 1.37880 * 119.99962 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00073 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 119.99788 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47349 * 89.99865 * 17 15 13 19 19 H 1.48504 * 109.47041 * 209.99889 * 17 15 13 20 20 H 1.48498 * 109.47165 * 329.99617 * 17 15 13 21 21 C 1.50699 * 109.47426 * 239.99151 * 2 1 3 22 22 C 1.33390 * 125.19751 * 99.99759 * 21 2 1 23 23 C 1.38428 * 114.91898 * 180.02562 * 22 21 2 24 24 C 1.33398 * 114.91826 * 0.02562 * 23 22 21 25 25 S 1.75880 * 109.59383 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47178 * 186.31637 * 1 2 3 27 27 H 1.09006 * 109.47066 * 306.31083 * 1 2 3 28 28 H 1.09001 * 109.47250 * 66.31202 * 1 2 3 29 29 H 0.97003 * 119.99901 * 82.11194 * 4 2 1 30 30 H 1.08995 * 109.47631 * 89.99187 * 9 8 5 31 31 H 1.09005 * 109.47276 * 210.00165 * 9 8 5 32 32 H 1.09001 * 109.46827 * 329.99369 * 9 8 5 33 33 H 1.09005 * 109.46885 * 67.27803 * 12 10 8 34 34 H 1.09005 * 109.46604 * 187.27358 * 12 10 8 35 35 H 1.08995 * 109.47407 * 307.27126 * 12 10 8 36 36 H 0.97001 * 120.00121 * 179.97438 * 16 15 13 37 37 H 1.07999 * 122.54216 * 0.02562 * 22 21 2 38 38 H 1.07997 * 122.54419 * 179.97438 * 23 22 21 39 39 H 1.07996 * 125.20025 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4798 0.1824 2.5257 6 8 2.8765 -0.7637 3.5090 7 8 3.3334 1.2147 2.0515 8 7 1.1252 0.9301 3.1158 9 6 0.8039 2.2978 2.7008 10 6 0.2479 0.2237 4.0527 11 1 0.5887 -0.8056 4.1638 12 6 0.2860 0.9231 5.4130 13 6 -1.1629 0.2315 3.5231 14 1 -1.3840 0.7140 2.5824 15 6 -2.1713 -0.3782 4.2389 16 7 -3.4027 -0.3709 3.7770 17 14 -1.7888 -1.2132 5.8655 18 1 -1.9347 -0.2331 6.9715 19 1 -2.7312 -2.3414 6.0764 20 1 -0.3965 -1.7291 5.8417 21 6 2.0323 -0.7106 -1.2303 22 6 2.4671 -0.1120 -2.3403 23 6 2.8802 -0.9720 -3.3432 24 6 2.7804 -2.2690 -3.0478 25 16 2.1341 -2.4559 -1.4228 26 1 -0.3633 -1.0214 0.1131 27 1 -0.3633 0.6086 0.8282 28 1 -0.3634 0.4129 -0.9411 29 1 2.0712 -1.6590 1.2097 30 1 0.1778 2.2694 1.8090 31 1 0.2695 2.8052 3.5040 32 1 1.7255 2.8366 2.4806 33 1 -0.1742 1.9076 5.3284 34 1 -0.2619 0.3274 6.1432 35 1 1.3211 1.0325 5.7365 36 1 -4.1121 -0.8002 4.2804 37 1 2.4946 0.9622 -2.4483 38 1 3.2541 -0.6197 -4.2931 39 1 3.0553 -3.0803 -3.7056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282951208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:43 Heat of formation + Delta-G solvation = -34.073489 kcal Electronic energy + Delta-G solvation = -23637.268181 eV Core-core repulsion = 20219.975646 eV Total energy + Delta-G solvation = -3417.292535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.27758 -36.86564 -36.49478 -35.74748 -35.42187 -32.54522 -30.38764 -30.07204 -28.26144 -25.71124 -25.11894 -24.30959 -21.96956 -20.99652 -19.83217 -18.57402 -17.82374 -17.42285 -16.84814 -16.42051 -15.63855 -15.49106 -15.02717 -14.51258 -13.97971 -13.62265 -13.48400 -13.34167 -12.87411 -12.77440 -12.62300 -12.32716 -12.20968 -12.12419 -12.03944 -11.89262 -11.68230 -11.47318 -11.35059 -11.30064 -11.12531 -11.04941 -10.66702 -10.51658 -10.18809 -9.67068 -9.46085 -9.36128 -8.71186 -8.68684 -8.50619 -8.16282 -6.19559 -4.20612 0.90119 1.11425 1.57776 1.97451 2.68676 3.21656 3.32563 3.34336 3.36850 3.98382 4.30825 4.56656 4.83874 4.97967 5.12122 5.21013 5.25920 5.45189 5.50297 5.50877 5.65637 5.97913 6.04771 6.09193 6.16185 6.22038 6.23448 6.28223 6.39552 6.45476 6.50667 6.54551 6.74070 6.83082 7.07424 7.27993 7.34806 7.60979 8.39338 8.83462 9.41613 10.92333 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.004896 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.294448 B = 5717.403837 C = 6343.197412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.224 3.776 3 H 0.104 0.896 4 N -1.123 6.123 5 S 2.784 3.216 6 O -0.982 6.982 7 O -0.992 6.992 8 N -0.983 5.983 9 C 0.097 3.903 10 C 0.242 3.758 11 H 0.052 0.948 12 C -0.161 4.161 13 C -0.524 4.524 14 H 0.087 0.913 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.168 4.168 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.222 4.222 25 S 0.110 5.890 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.411 0.589 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -0.005 -11.233 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.115 3.885 3 H 0.122 0.878 4 N -0.880 5.880 5 S 2.793 3.207 6 O -0.966 6.966 7 O -0.975 6.975 8 N -0.825 5.825 9 C -0.049 4.049 10 C 0.138 3.862 11 H 0.069 0.931 12 C -0.220 4.220 13 C -0.563 4.563 14 H 0.105 0.895 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.187 1.187 21 C -0.287 4.287 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.358 4.358 25 S 0.374 5.626 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.244 0.756 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.895 -1.036 -9.938 14.063 hybrid contribution -0.118 0.169 -0.216 0.299 sum 9.777 -0.867 -10.154 14.122 Atomic orbital electron populations 1.22449 0.92503 1.04557 1.03399 1.19182 0.94906 0.94793 0.79613 0.87819 1.56218 1.83350 1.19184 1.29291 1.01763 0.73468 0.72954 0.72563 1.93596 1.81792 1.63181 1.58033 1.93546 1.64294 1.57963 1.81717 1.57437 1.43929 1.23280 1.57832 1.21364 1.00403 0.82209 1.00967 1.19045 0.90925 0.91190 0.85074 0.93056 1.22451 0.99188 1.01714 0.98632 1.21187 0.89487 1.37080 1.08554 0.89543 1.24863 0.94892 0.95412 0.97432 1.69864 1.00224 1.43931 1.38951 0.87055 0.78529 0.79229 0.84726 1.20345 1.22239 1.18741 1.24804 1.07105 0.96548 1.00284 1.20108 1.02540 1.01442 0.92913 1.20137 1.03147 0.92265 1.00696 1.25629 1.09462 1.00655 1.00053 1.84326 1.62516 1.04335 1.11450 0.91396 0.89104 0.91855 0.75582 0.93214 0.90383 0.91793 0.92154 0.93468 0.94554 0.92476 0.84046 0.84390 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.50 37.15 0.35 -2.14 16 2 C 0.22 3.15 3.37 -69.08 -0.23 2.92 16 3 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 4 N -1.12 -17.61 5.50 -5.88 -0.03 -17.64 16 5 S 2.78 51.11 6.09 -107.50 -0.65 50.46 16 6 O -0.98 -20.87 16.90 -57.17 -0.97 -21.84 16 7 O -0.99 -18.95 16.00 -57.17 -0.91 -19.86 16 8 N -0.98 -18.57 3.11 -115.85 -0.36 -18.93 16 9 C 0.10 1.57 9.57 59.85 0.57 2.14 16 10 C 0.24 5.35 2.14 -69.08 -0.15 5.21 16 11 H 0.05 1.21 6.19 -51.93 -0.32 0.89 16 12 C -0.16 -3.37 8.52 37.16 0.32 -3.05 16 13 C -0.52 -12.99 8.88 -34.44 -0.31 -13.29 16 14 H 0.09 2.23 6.19 -52.49 -0.32 1.91 16 15 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 16 N -0.89 -25.21 13.96 55.43 0.77 -24.43 16 17 Si 0.87 20.77 24.30 -169.99 -4.13 16.64 16 18 H -0.28 -6.41 6.94 56.52 0.39 -6.02 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.13 6.52 56.52 0.37 -5.76 16 21 C -0.17 -2.17 5.45 -36.00 -0.20 -2.37 16 22 C -0.14 -1.59 10.04 -41.21 -0.41 -2.00 16 23 C -0.13 -1.34 10.18 -41.20 -0.42 -1.76 16 24 C -0.22 -2.26 11.23 29.04 0.33 -1.93 16 25 S 0.11 1.32 22.42 -107.50 -2.41 -1.09 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.50 5.20 -51.93 -0.27 1.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.41 6.03 8.03 -34.47 -0.28 5.76 16 30 H 0.05 0.75 6.54 -51.93 -0.34 0.41 16 31 H 0.08 1.26 6.89 -51.93 -0.36 0.91 16 32 H 0.06 0.94 7.00 -51.93 -0.36 0.57 16 33 H 0.06 1.19 7.16 -51.93 -0.37 0.82 16 34 H 0.05 1.02 3.51 -51.93 -0.18 0.84 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -30.78 334.24 -8.81 -39.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.91 Total: 6.40 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.24 Total: -14.33 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.38 Total: -61.00 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.88 Total: -41.70 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.13 Total: 16.64 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -3.07 Total: 49.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.78 -8.81 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds