Wall clock time and date at job start Tue Mar 31 2020 12:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47373 * 2 1 4 4 N 1.46509 * 109.47039 * 119.99270 * 2 1 3 5 5 S 1.65597 * 119.99948 * 262.11102 * 4 2 1 6 6 O 1.42102 * 106.40162 * 179.07877 * 5 4 2 7 7 O 1.42096 * 106.40615 * 312.00041 * 5 4 2 8 8 N 1.65597 * 107.21998 * 65.53952 * 5 4 2 9 9 C 1.46499 * 120.00113 * 266.14942 * 8 5 4 10 10 C 1.46503 * 120.00207 * 86.14047 * 8 5 4 11 11 H 1.08995 * 109.46917 * 354.31772 * 10 8 5 12 12 C 1.53005 * 109.46854 * 114.31303 * 10 8 5 13 13 C 1.50697 * 109.47242 * 234.31563 * 10 8 5 14 14 H 1.08002 * 120.00421 * 0.02562 * 13 10 8 15 15 C 1.37880 * 119.99962 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00073 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 119.99788 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47349 * 89.99865 * 17 15 13 19 19 H 1.48504 * 109.47041 * 209.99889 * 17 15 13 20 20 H 1.48498 * 109.47165 * 329.99617 * 17 15 13 21 21 C 1.50699 * 109.47426 * 239.99151 * 2 1 3 22 22 C 1.33390 * 125.19751 * 99.99759 * 21 2 1 23 23 C 1.38428 * 114.91898 * 180.02562 * 22 21 2 24 24 C 1.33398 * 114.91826 * 0.02562 * 23 22 21 25 25 S 1.75880 * 109.59383 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47178 * 186.31637 * 1 2 3 27 27 H 1.09006 * 109.47066 * 306.31083 * 1 2 3 28 28 H 1.09001 * 109.47250 * 66.31202 * 1 2 3 29 29 H 0.97003 * 119.99901 * 82.11194 * 4 2 1 30 30 H 1.08995 * 109.47631 * 89.99187 * 9 8 5 31 31 H 1.09005 * 109.47276 * 210.00165 * 9 8 5 32 32 H 1.09001 * 109.46827 * 329.99369 * 9 8 5 33 33 H 1.09005 * 109.46885 * 67.27803 * 12 10 8 34 34 H 1.09005 * 109.46604 * 187.27358 * 12 10 8 35 35 H 1.08995 * 109.47407 * 307.27126 * 12 10 8 36 36 H 0.97001 * 120.00121 * 179.97438 * 16 15 13 37 37 H 1.07999 * 122.54216 * 0.02562 * 22 21 2 38 38 H 1.07997 * 122.54419 * 179.97438 * 23 22 21 39 39 H 1.07996 * 125.20025 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4798 0.1824 2.5257 6 8 2.8765 -0.7637 3.5090 7 8 3.3334 1.2147 2.0515 8 7 1.1252 0.9301 3.1158 9 6 0.8039 2.2978 2.7008 10 6 0.2479 0.2237 4.0527 11 1 0.5887 -0.8056 4.1638 12 6 0.2860 0.9231 5.4130 13 6 -1.1629 0.2315 3.5231 14 1 -1.3840 0.7140 2.5824 15 6 -2.1713 -0.3782 4.2389 16 7 -3.4027 -0.3709 3.7770 17 14 -1.7888 -1.2132 5.8655 18 1 -1.9347 -0.2331 6.9715 19 1 -2.7312 -2.3414 6.0764 20 1 -0.3965 -1.7291 5.8417 21 6 2.0323 -0.7106 -1.2303 22 6 2.4671 -0.1120 -2.3403 23 6 2.8802 -0.9720 -3.3432 24 6 2.7804 -2.2690 -3.0478 25 16 2.1341 -2.4559 -1.4228 26 1 -0.3633 -1.0214 0.1131 27 1 -0.3633 0.6086 0.8282 28 1 -0.3634 0.4129 -0.9411 29 1 2.0712 -1.6590 1.2097 30 1 0.1778 2.2694 1.8090 31 1 0.2695 2.8052 3.5040 32 1 1.7255 2.8366 2.4806 33 1 -0.1742 1.9076 5.3284 34 1 -0.2619 0.3274 6.1432 35 1 1.3211 1.0325 5.7365 36 1 -4.1121 -0.8002 4.2804 37 1 2.4946 0.9622 -2.4483 38 1 3.2541 -0.6197 -4.2931 39 1 3.0553 -3.0803 -3.7056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282951208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:42 Heat of formation + Delta-G solvation = -56.193469 kcal Electronic energy + Delta-G solvation = -23638.227376 eV Core-core repulsion = 20219.975646 eV Total energy + Delta-G solvation = -3418.251729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.22670 -38.40091 -38.09062 -36.97774 -36.87110 -34.46543 -31.80799 -31.49070 -29.27732 -27.20768 -26.96368 -25.24693 -23.02840 -22.70830 -20.95592 -19.82049 -19.03714 -18.92680 -18.39392 -18.01789 -17.22832 -16.61335 -16.29693 -15.92013 -15.37565 -15.12758 -14.88243 -14.55477 -14.36368 -14.11805 -13.89266 -13.77227 -13.54224 -13.52894 -13.28246 -13.17414 -13.04939 -13.03853 -12.98467 -12.73734 -12.55458 -12.31496 -12.15208 -12.00023 -11.57620 -11.45761 -11.22127 -10.76031 -10.69036 -9.76047 -9.57994 -9.39522 -8.24309 -6.26087 -0.40729 0.09668 0.69203 1.12663 1.32396 1.41242 1.47050 1.80960 1.96594 2.34526 2.53792 3.10786 3.33756 3.58945 3.97156 4.10022 4.22338 4.28545 4.33869 4.46402 4.65427 4.68276 4.73241 4.73510 4.80997 4.88626 4.94839 5.05958 5.14425 5.19808 5.26001 5.37303 5.47241 5.51277 5.58826 5.61230 5.80159 5.99610 6.39841 6.81287 7.38519 8.90166 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.004896 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.294448 B = 5717.403837 C = 6343.197412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.226 3.774 3 H 0.112 0.888 4 N -1.119 6.119 5 S 2.799 3.201 6 O -1.012 7.012 7 O -0.997 6.997 8 N -0.986 5.986 9 C 0.091 3.909 10 C 0.244 3.756 11 H 0.039 0.961 12 C -0.162 4.162 13 C -0.506 4.506 14 H 0.071 0.929 15 C 0.030 3.970 16 N -0.935 5.935 17 Si 0.917 3.083 18 H -0.265 1.265 19 H -0.301 1.301 20 H -0.257 1.257 21 C -0.195 4.195 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.211 4.211 25 S 0.076 5.924 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.415 0.585 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 0.517 -12.387 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.117 3.883 3 H 0.130 0.870 4 N -0.878 5.878 5 S 2.808 3.192 6 O -0.996 6.996 7 O -0.980 6.980 8 N -0.827 5.827 9 C -0.054 4.054 10 C 0.138 3.862 11 H 0.056 0.944 12 C -0.221 4.221 13 C -0.545 4.545 14 H 0.089 0.911 15 C -0.169 4.169 16 N -0.575 5.575 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.229 1.229 20 H -0.182 1.182 21 C -0.314 4.314 22 C -0.163 4.163 23 C -0.168 4.168 24 C -0.346 4.346 25 S 0.339 5.661 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.249 0.751 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.176 0.824 38 H 0.185 0.815 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.400 -0.495 -11.088 15.911 hybrid contribution -0.521 0.034 -0.033 0.523 sum 10.879 -0.461 -11.121 15.564 Atomic orbital electron populations 1.22353 0.93310 1.03111 1.03444 1.19216 0.94209 0.95267 0.79560 0.87006 1.56030 1.83192 1.19403 1.29209 1.01187 0.73158 0.72460 0.72392 1.93551 1.82423 1.64001 1.59613 1.93533 1.64457 1.58279 1.81758 1.57356 1.43332 1.24226 1.57798 1.21550 1.01595 0.80973 1.01303 1.18823 0.89689 0.91281 0.86417 0.94371 1.22414 1.00416 1.01837 0.97413 1.21378 0.90679 1.34994 1.07484 0.91140 1.25450 0.94844 0.96477 1.00114 1.69972 1.01158 1.45926 1.40427 0.86351 0.78290 0.78516 0.82249 1.19117 1.22873 1.18197 1.24661 1.09496 0.96799 1.00415 1.20462 1.00809 1.02625 0.92451 1.20459 1.02836 0.91972 1.01523 1.25985 1.08148 1.01676 0.98814 1.84442 1.63481 1.04481 1.13668 0.93034 0.91213 0.90034 0.75084 0.92444 0.90343 0.89905 0.91217 0.94170 0.92744 0.92671 0.82380 0.81508 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 9.50 71.98 0.68 -4.08 16 2 C 0.23 6.14 3.37 44.24 0.15 6.29 16 3 H 0.11 2.82 7.46 -2.39 -0.02 2.80 16 4 N -1.12 -34.60 5.50 -172.51 -0.95 -35.55 16 5 S 2.80 100.42 6.09 -56.49 -0.34 100.08 16 6 O -1.01 -42.51 16.90 -128.00 -2.16 -44.67 16 7 O -1.00 -36.52 16.00 -128.00 -2.05 -38.57 16 8 N -0.99 -36.34 3.11 -520.44 -1.62 -37.96 16 9 C 0.09 2.83 9.57 127.77 1.22 4.05 16 10 C 0.24 10.60 2.14 44.25 0.09 10.70 16 11 H 0.04 1.79 6.19 -2.39 -0.01 1.77 16 12 C -0.16 -6.52 8.52 71.98 0.61 -5.91 16 13 C -0.51 -25.14 8.88 25.60 0.23 -24.91 16 14 H 0.07 3.69 6.19 -2.91 -0.02 3.67 16 15 C 0.03 1.61 5.45 84.66 0.46 2.07 16 16 N -0.93 -53.70 13.96 21.45 0.30 -53.40 16 17 Si 0.92 42.56 24.30 68.60 1.67 44.23 16 18 H -0.27 -11.73 6.94 99.48 0.69 -11.04 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 20 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 21 C -0.19 -4.75 5.45 24.59 0.13 -4.62 16 22 C -0.13 -2.68 10.04 21.22 0.21 -2.47 16 23 C -0.14 -2.36 10.18 21.22 0.22 -2.14 16 24 C -0.21 -3.73 11.23 66.72 0.75 -2.98 16 25 S 0.08 1.75 22.42 -56.49 -1.27 0.48 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 2.32 5.20 -2.38 -0.01 2.31 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.41 12.23 8.03 -96.74 -0.78 11.45 16 30 H 0.06 1.69 6.54 -2.39 -0.02 1.67 16 31 H 0.08 2.43 6.89 -2.38 -0.02 2.41 16 32 H 0.08 2.26 7.00 -2.39 -0.02 2.25 16 33 H 0.07 2.64 7.16 -2.38 -0.02 2.62 16 34 H 0.04 1.67 3.51 -2.38 -0.01 1.66 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -64.79 334.24 -1.43 -66.22 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.23 Total: 23.14 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.76 Total: -24.00 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -2.27 Total: -126.91 kcal Atomic # 8 Polarization: -79.03 SS G_CDS: -4.21 Total: -83.24 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Atomic # 16 Polarization: 102.17 SS G_CDS: -1.61 Total: 100.56 kcal Total: -64.79 -1.43 -66.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds