Wall clock time and date at job start Tue Mar 31 2020 12:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08993 * 109.46893 * 334.99580 * 18 17 14 20 20 C 1.52996 * 109.47477 * 94.99863 * 18 17 14 21 21 C 1.50703 * 109.46757 * 214.99716 * 18 17 14 22 22 C 1.33392 * 125.20003 * 139.99899 * 21 18 17 23 23 C 1.38421 * 114.92056 * 179.97438 * 22 21 18 24 24 C 1.33390 * 114.92062 * 0.02562 * 23 22 21 25 25 S 1.75877 * 125.20801 * 319.69555 * 21 18 17 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 34 34 H 1.08994 * 109.47062 * 300.00396 * 20 18 17 35 35 H 1.08999 * 109.46886 * 59.99788 * 20 18 17 36 36 H 1.08998 * 109.47251 * 179.97438 * 20 18 17 37 37 H 1.08001 * 122.53913 * 359.97438 * 22 21 18 38 38 H 1.07998 * 122.53927 * 180.02562 * 23 22 21 39 39 H 1.08003 * 125.19902 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 0.9878 -1.0034 3.8084 20 6 1.8830 -0.2342 5.6105 21 6 -0.1769 0.6308 4.5345 22 6 -1.3534 0.0045 4.5881 23 6 -2.4404 0.8253 4.8342 24 6 -2.1468 2.1183 4.9798 25 16 -0.4117 2.3517 4.8113 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 1.9055 1.7750 3.4681 34 1 2.8435 -0.7158 5.4277 35 1 2.0463 0.7340 6.0837 36 1 1.2803 -0.8620 6.2668 37 1 -1.4504 -1.0623 4.4501 38 1 -3.4498 0.4475 4.9030 39 1 -2.8642 2.9014 5.1763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282951212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:46 Heat of formation + Delta-G solvation = -40.644579 kcal Electronic energy + Delta-G solvation = -23577.808055 eV Core-core repulsion = 20160.230576 eV Total energy + Delta-G solvation = -3417.577479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.32789 -36.72395 -36.20823 -35.80173 -35.23777 -32.58031 -30.44604 -29.09829 -28.42972 -25.60809 -25.11974 -24.40248 -22.09361 -20.85282 -19.81301 -18.49725 -17.81483 -17.16511 -16.83835 -16.23580 -15.57007 -15.37460 -14.97657 -14.35009 -14.02002 -13.52464 -13.45639 -13.26771 -12.94752 -12.78386 -12.70508 -12.27872 -12.16019 -11.97704 -11.81014 -11.56120 -11.48202 -11.33698 -11.28306 -11.16747 -10.95942 -10.79444 -10.71825 -10.49213 -10.26628 -10.03494 -9.53574 -9.24047 -8.73858 -8.51326 -8.44117 -7.98012 -6.05751 -4.12456 0.90354 1.18208 1.56066 1.94345 2.68147 3.31216 3.35626 3.38464 3.47616 4.08697 4.41208 4.49819 4.90306 4.95186 5.01889 5.15468 5.25672 5.32807 5.43732 5.48794 5.62078 5.75359 5.90573 6.07899 6.11155 6.14791 6.23048 6.34902 6.42403 6.61558 6.79965 6.80899 7.02460 7.08116 7.47913 7.64578 7.80268 8.05660 8.28970 8.89375 9.53187 10.99879 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.004789 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.652838 B = 5845.637162 C = 6669.723342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.988 5.988 13 C 0.108 3.892 14 S 2.778 3.222 15 O -0.992 6.992 16 O -0.972 6.972 17 N -1.129 6.129 18 C 0.227 3.773 19 H 0.100 0.900 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.217 4.217 25 S 0.107 5.893 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -0.322 16.628 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.786 3.214 15 O -0.976 6.976 16 O -0.956 6.956 17 N -0.886 5.886 18 C 0.117 3.883 19 H 0.117 0.883 20 C -0.226 4.226 21 C -0.293 4.293 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.352 4.352 25 S 0.371 5.629 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.608 0.916 16.537 17.191 hybrid contribution -1.324 -1.194 -0.991 2.039 sum -5.932 -0.278 15.546 16.642 Atomic orbital electron populations 1.22097 0.98201 0.99619 1.00665 1.18727 0.91305 0.92952 0.80372 0.92386 1.21292 1.31642 1.13009 0.90044 0.92011 1.24905 0.94965 0.95006 0.98982 1.69852 1.36517 1.22662 1.23863 0.86556 0.79357 0.79557 0.81918 1.20250 1.21236 1.20163 1.57688 1.69972 1.19700 1.35791 1.21206 1.01931 0.82255 0.98476 1.02045 0.73647 0.73283 0.72380 1.93543 1.68946 1.60602 1.74482 1.93621 1.74253 1.55992 1.71699 1.56520 1.61989 1.17176 1.52941 1.19097 0.84852 0.92667 0.91656 0.88257 1.22360 1.01645 1.02724 0.95916 1.24715 0.98872 0.96779 1.08956 1.20096 0.90871 1.01534 1.03853 1.20137 1.00201 0.92640 1.03186 1.25611 0.98338 1.00618 1.10671 1.84199 1.02795 1.06107 1.69845 0.96962 0.88955 0.94861 0.92661 0.93085 0.93500 0.90857 0.75687 0.90265 0.91996 0.91311 0.84097 0.84313 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.98 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -20.24 3.12 -115.85 -0.36 -20.60 16 13 C 0.11 1.86 9.32 59.85 0.56 2.42 16 14 S 2.78 54.05 6.00 -107.50 -0.65 53.41 16 15 O -0.99 -19.91 16.47 -57.17 -0.94 -20.85 16 16 O -0.97 -22.75 16.70 -57.17 -0.95 -23.70 16 17 N -1.13 -17.10 5.52 -5.88 -0.03 -17.13 16 18 C 0.23 2.90 3.23 -69.08 -0.22 2.68 16 19 H 0.10 1.23 6.09 -51.93 -0.32 0.91 16 20 C -0.17 -1.86 9.50 37.16 0.35 -1.51 16 21 C -0.17 -2.11 5.45 -36.00 -0.20 -2.31 16 22 C -0.13 -1.47 10.04 -41.21 -0.41 -1.88 16 23 C -0.13 -1.33 10.18 -41.21 -0.42 -1.75 16 24 C -0.22 -2.20 11.23 29.04 0.33 -1.87 16 25 S 0.11 1.22 22.39 -107.50 -2.41 -1.19 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 32 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 33 H 0.41 5.78 7.97 -34.47 -0.27 5.50 16 34 H 0.08 0.97 7.64 -51.93 -0.40 0.58 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -31.97 343.20 -9.97 -41.94 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.16 Total: 4.51 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.25 Total: -13.47 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.23 Total: -61.96 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.90 Total: -44.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -3.05 Total: 52.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.97 -9.97 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.296 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds