Wall clock time and date at job start Tue Mar 31 2020 12:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08993 * 109.46893 * 334.99580 * 18 17 14 20 20 C 1.52996 * 109.47477 * 94.99863 * 18 17 14 21 21 C 1.50703 * 109.46757 * 214.99716 * 18 17 14 22 22 C 1.33392 * 125.20003 * 139.99899 * 21 18 17 23 23 C 1.38421 * 114.92056 * 179.97438 * 22 21 18 24 24 C 1.33390 * 114.92062 * 0.02562 * 23 22 21 25 25 S 1.75877 * 125.20801 * 319.69555 * 21 18 17 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 31 31 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 32 32 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 33 33 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 34 34 H 1.08994 * 109.47062 * 300.00396 * 20 18 17 35 35 H 1.08999 * 109.46886 * 59.99788 * 20 18 17 36 36 H 1.08998 * 109.47251 * 179.97438 * 20 18 17 37 37 H 1.08001 * 122.53913 * 359.97438 * 22 21 18 38 38 H 1.07998 * 122.53927 * 180.02562 * 23 22 21 39 39 H 1.08003 * 125.19902 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 0.9878 -1.0034 3.8084 20 6 1.8830 -0.2342 5.6105 21 6 -0.1769 0.6308 4.5345 22 6 -1.3534 0.0045 4.5881 23 6 -2.4404 0.8253 4.8342 24 6 -2.1468 2.1183 4.9798 25 16 -0.4117 2.3517 4.8113 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.4157 -2.7377 0.9716 31 1 1.6239 -2.2853 2.5002 32 1 0.6905 -2.3003 0.9847 33 1 1.9055 1.7750 3.4681 34 1 2.8435 -0.7158 5.4277 35 1 2.0463 0.7340 6.0837 36 1 1.2803 -0.8620 6.2668 37 1 -1.4504 -1.0623 4.4501 38 1 -3.4498 0.4475 4.9030 39 1 -2.8642 2.9014 5.1763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282951212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:45 Heat of formation + Delta-G solvation = -62.733852 kcal Electronic energy + Delta-G solvation = -23578.765917 eV Core-core repulsion = 20160.230576 eV Total energy + Delta-G solvation = -3418.535342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.22313 -38.33726 -37.90765 -36.93737 -36.84777 -34.52958 -31.51183 -30.91940 -29.28190 -27.28699 -26.99400 -25.25072 -23.04311 -22.62914 -20.92616 -19.80837 -18.88423 -18.62879 -18.57354 -17.94033 -17.05574 -16.53941 -16.27938 -15.89566 -15.18657 -15.00426 -14.85359 -14.61320 -14.31746 -13.98561 -13.70294 -13.53211 -13.42756 -13.22694 -13.15645 -13.12220 -13.04117 -12.98631 -12.79880 -12.60436 -12.55967 -12.36540 -12.18083 -12.14475 -11.89624 -11.55901 -11.16080 -10.74598 -10.49325 -9.70591 -9.54768 -9.35745 -8.10830 -6.24600 -0.38642 0.11449 0.71448 1.13159 1.43502 1.45761 1.52597 1.84096 2.06179 2.43861 2.60294 3.17465 3.40423 3.55647 3.90916 4.15224 4.18258 4.29659 4.36493 4.65106 4.68848 4.74783 4.83055 4.87543 4.96273 5.02053 5.07838 5.16090 5.19945 5.24519 5.29892 5.41278 5.61411 5.62650 5.68077 5.87184 5.94459 6.15607 6.30752 6.82832 7.44357 8.93193 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.004789 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.652838 B = 5845.637162 C = 6669.723342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.795 3.205 15 O -0.999 6.999 16 O -1.017 7.017 17 N -1.118 6.118 18 C 0.220 3.780 19 H 0.105 0.895 20 C -0.164 4.164 21 C -0.194 4.194 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.213 4.213 25 S 0.081 5.919 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.415 0.585 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -1.516 17.714 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.804 3.196 15 O -0.982 6.982 16 O -1.002 7.002 17 N -0.879 5.879 18 C 0.112 3.888 19 H 0.123 0.877 20 C -0.223 4.223 21 C -0.312 4.312 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.348 4.348 25 S 0.344 5.656 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.016 -0.300 17.638 18.639 hybrid contribution -0.933 -0.808 -1.219 1.735 sum -6.949 -1.109 16.420 17.864 Atomic orbital electron populations 1.21861 0.96766 1.00174 1.00184 1.18374 0.92224 0.91192 0.81158 0.96062 1.21621 1.31689 1.13066 0.91419 0.92446 1.25641 0.95203 0.95702 1.01675 1.69975 1.37303 1.23677 1.24392 0.85656 0.78423 0.79081 0.78741 1.18995 1.20759 1.20540 1.57555 1.69949 1.21052 1.35142 1.21440 1.01971 0.80284 1.00852 1.01322 0.73592 0.72461 0.72251 1.93529 1.69459 1.60839 1.74380 1.93555 1.75839 1.57558 1.73214 1.56144 1.61880 1.17690 1.52154 1.19344 0.85219 0.92434 0.91812 0.87690 1.22338 1.01166 1.03356 0.95458 1.24634 0.98772 0.96975 1.10856 1.20420 0.90622 1.02599 1.02512 1.20443 1.01138 0.92507 1.02808 1.25951 0.97604 1.01447 1.09812 1.84298 1.04570 1.06355 1.70389 0.95084 0.91667 0.93656 0.92657 0.93771 0.90022 0.90172 0.75017 0.91552 0.91587 0.88977 0.82410 0.81945 0.79837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.95 71.98 0.64 -5.20 16 2 C 0.27 13.55 2.62 44.25 0.12 13.67 16 3 H 0.02 1.21 6.91 -2.39 -0.02 1.20 16 4 C -0.54 -29.20 8.37 25.60 0.21 -28.98 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.66 11.32 21.45 0.24 -51.42 16 8 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 N -0.99 -40.35 3.12 -520.44 -1.62 -41.97 16 13 C 0.10 3.29 9.32 127.77 1.19 4.48 16 14 S 2.79 108.76 6.00 -56.49 -0.34 108.42 16 15 O -1.00 -39.38 16.47 -128.00 -2.11 -41.49 16 16 O -1.02 -49.03 16.70 -128.00 -2.14 -51.17 16 17 N -1.12 -33.16 5.52 -172.52 -0.95 -34.12 16 18 C 0.22 5.24 3.23 44.24 0.14 5.38 16 19 H 0.11 2.34 6.09 -2.39 -0.01 2.32 16 20 C -0.16 -3.34 9.50 71.98 0.68 -2.66 16 21 C -0.19 -4.30 5.45 24.59 0.13 -4.17 16 22 C -0.13 -2.52 10.04 21.22 0.21 -2.30 16 23 C -0.14 -2.41 10.18 21.22 0.22 -2.19 16 24 C -0.21 -3.79 11.23 66.72 0.75 -3.04 16 25 S 0.08 1.73 22.39 -56.49 -1.27 0.46 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 28 H 0.04 1.87 6.66 -2.39 -0.02 1.86 16 29 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.09 6.17 -2.39 -0.01 2.08 16 32 H 0.08 2.52 6.43 -2.39 -0.02 2.51 16 33 H 0.42 11.68 7.97 -96.74 -0.77 10.90 16 34 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -68.75 343.20 -1.11 -69.86 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.30 Total: 19.65 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.75 Total: -23.60 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -2.33 Total: -127.51 kcal Atomic # 8 Polarization: -88.41 SS G_CDS: -4.25 Total: -92.66 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 110.49 SS G_CDS: -1.60 Total: 108.89 kcal Total: -68.75 -1.11 -69.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282951212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.122 kcal (2) G-P(sol) polarization free energy of solvation -68.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds