Wall clock time and date at job start Tue Mar 31 2020 12:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46500 * 120.00105 * 270.00380 * 17 14 12 19 19 C 1.46501 * 120.00209 * 89.99552 * 17 14 12 20 20 C 1.50703 * 109.46982 * 95.00032 * 19 17 14 21 21 C 1.33397 * 125.19765 * 90.00100 * 20 19 17 22 22 C 1.38421 * 114.91600 * 179.97438 * 21 20 19 23 23 C 1.33390 * 114.92586 * 0.02562 * 22 21 20 24 24 S 1.75877 * 125.20629 * 269.69979 * 20 19 17 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 30 30 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 31 31 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 32 32 H 1.09006 * 109.47289 * 89.99608 * 18 17 14 33 33 H 1.08997 * 109.46831 * 209.99612 * 18 17 14 34 34 H 1.09000 * 109.47234 * 329.99597 * 18 17 14 35 35 H 1.08994 * 109.47591 * 215.00462 * 19 17 14 36 36 H 1.09007 * 109.47084 * 335.00858 * 19 17 14 37 37 H 1.07994 * 122.54061 * 359.95664 * 21 20 19 38 38 H 1.08005 * 122.53972 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.20512 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1725 0.8457 -0.8970 19 6 5.3068 -1.2474 -2.3250 20 6 6.1022 -0.8246 -3.5331 21 6 7.3436 -0.3371 -3.5044 22 6 7.8733 -0.0170 -4.7425 23 6 7.0620 -0.2440 -5.7767 24 16 5.5386 -0.9052 -5.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7091 1.1614 3.4844 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5819 -1.9865 31 1 1.5295 -2.5969 -0.4708 32 1 5.0124 0.5164 0.1297 33 1 6.2422 0.8950 -1.1003 34 1 4.7306 1.8325 -1.0351 35 1 5.9852 -1.6039 -1.5499 36 1 4.6208 -2.0475 -2.6035 37 1 7.8935 -0.2022 -2.5848 38 1 8.8681 0.3860 -4.8622 39 1 7.3052 -0.0555 -6.8120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283040522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:15 Heat of formation + Delta-G solvation = -31.783331 kcal Electronic energy + Delta-G solvation = -23629.306159 eV Core-core repulsion = 20212.112932 eV Total energy + Delta-G solvation = -3417.193226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.09050 -36.73693 -36.14689 -35.77136 -35.22392 -32.62169 -30.50955 -29.10408 -27.07419 -25.53073 -25.20147 -24.57100 -22.79645 -20.73046 -19.38769 -18.35379 -17.38843 -17.07322 -16.75529 -16.37741 -15.75527 -15.39158 -14.90358 -14.29099 -13.86958 -13.49349 -13.37946 -13.07723 -12.78380 -12.73055 -12.65231 -12.36828 -12.25461 -11.99111 -11.81703 -11.63310 -11.40158 -11.25970 -11.22391 -11.09616 -10.95349 -10.91058 -10.54380 -10.43843 -10.22755 -10.09117 -9.34037 -8.89541 -8.68694 -8.50778 -8.38025 -7.96625 -6.11910 -4.20683 0.91798 1.27154 1.72212 2.12301 2.73273 3.21894 3.29908 3.31138 3.48895 4.09589 4.32799 4.80261 4.88826 4.90903 5.05726 5.18523 5.40607 5.50319 5.55477 5.60865 5.66873 5.94707 6.07445 6.15715 6.15780 6.25128 6.29328 6.34306 6.48566 6.62021 6.75690 6.86160 6.91102 7.10452 7.47813 7.60087 7.75907 8.02749 8.23644 8.82511 9.45725 10.93074 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.004484 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.092807 B = 6242.814487 C = 6812.361551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.776 3.224 15 O -0.989 6.989 16 O -0.978 6.978 17 N -1.004 6.004 18 C 0.088 3.912 19 C 0.199 3.801 20 C -0.198 4.198 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.231 4.231 24 S 0.144 5.856 25 H 0.093 0.907 26 H 0.012 0.988 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.984 -4.228 -10.493 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.962 6.962 17 N -0.841 5.841 18 C -0.057 4.057 19 C 0.071 3.929 20 C -0.318 4.318 21 C -0.162 4.162 22 C -0.171 4.171 23 C -0.368 4.368 24 S 0.408 5.592 25 H 0.111 0.889 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.253 -4.073 -11.793 15.533 hybrid contribution 1.841 -0.136 1.898 2.647 sum 11.094 -4.209 -9.895 15.450 Atomic orbital electron populations 1.22053 0.97970 0.99661 1.00744 1.18731 0.91899 0.92697 0.80253 0.92461 1.21367 1.31907 1.13135 0.90127 0.91917 1.24925 0.94930 0.94967 0.98966 1.69878 1.36117 1.22590 1.23830 0.86540 0.78600 0.79931 0.82540 1.20652 1.21197 1.19950 1.57801 1.64162 1.21385 1.39903 1.21184 0.98882 0.82039 1.01799 1.02106 0.72444 0.73581 0.73284 1.93538 1.85843 1.76171 1.41735 1.93565 1.83587 1.32262 1.86776 1.58044 1.30373 1.35481 1.60233 1.21533 0.98352 0.92612 0.93203 1.19528 0.94827 0.87565 0.90988 1.25166 0.99138 1.08798 0.98663 1.20106 0.95012 1.02242 0.98874 1.20120 1.01177 1.03992 0.91804 1.25822 0.98638 1.09119 1.03182 1.84932 1.14162 1.61363 0.98729 0.88899 0.96929 0.94864 0.92613 0.93835 0.93422 0.90195 0.91531 0.91700 0.90280 0.88578 0.89373 0.84439 0.84723 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.18 7.99 -34.44 -0.28 -13.45 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.96 11.32 55.43 0.63 -23.34 16 8 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.99 -20.44 3.12 -115.84 -0.36 -20.80 16 13 C 0.11 1.89 9.28 59.85 0.56 2.44 16 14 S 2.78 55.11 6.01 -107.50 -0.65 54.47 16 15 O -0.99 -19.58 15.60 -57.17 -0.89 -20.47 16 16 O -0.98 -22.68 15.30 -57.17 -0.88 -23.55 16 17 N -1.00 -16.44 3.23 -123.05 -0.40 -16.84 16 18 C 0.09 1.35 10.68 59.85 0.64 1.99 16 19 C 0.20 2.70 5.81 -5.19 -0.03 2.67 16 20 C -0.20 -2.66 6.09 -36.00 -0.22 -2.88 16 21 C -0.13 -1.53 10.05 -41.21 -0.41 -1.95 16 22 C -0.14 -1.53 10.18 -41.21 -0.42 -1.94 16 23 C -0.23 -2.60 11.23 29.04 0.33 -2.27 16 24 S 0.14 1.97 22.74 -107.50 -2.45 -0.47 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.71 7.44 -51.93 -0.39 0.33 16 31 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 35 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 36 H 0.09 1.17 7.26 -51.93 -0.38 0.79 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.18 346.20 -10.03 -40.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.46 Total: 1.29 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 0.22 Total: -10.65 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.13 Total: -60.98 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.77 Total: -44.02 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 57.08 SS G_CDS: -3.09 Total: 53.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.18 -10.03 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283040522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.431 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds