Wall clock time and date at job start Tue Mar 31 2020 12:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46500 * 120.00105 * 270.00380 * 17 14 12 19 19 C 1.46501 * 120.00209 * 89.99552 * 17 14 12 20 20 C 1.50703 * 109.46982 * 95.00032 * 19 17 14 21 21 C 1.33397 * 125.19765 * 90.00100 * 20 19 17 22 22 C 1.38421 * 114.91600 * 179.97438 * 21 20 19 23 23 C 1.33390 * 114.92586 * 0.02562 * 22 21 20 24 24 S 1.75877 * 125.20629 * 269.69979 * 20 19 17 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 30 30 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 31 31 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 32 32 H 1.09006 * 109.47289 * 89.99608 * 18 17 14 33 33 H 1.08997 * 109.46831 * 209.99612 * 18 17 14 34 34 H 1.09000 * 109.47234 * 329.99597 * 18 17 14 35 35 H 1.08994 * 109.47591 * 215.00462 * 19 17 14 36 36 H 1.09007 * 109.47084 * 335.00858 * 19 17 14 37 37 H 1.07994 * 122.54061 * 359.95664 * 21 20 19 38 38 H 1.08005 * 122.53972 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.20512 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1725 0.8457 -0.8970 19 6 5.3068 -1.2474 -2.3250 20 6 6.1022 -0.8246 -3.5331 21 6 7.3436 -0.3371 -3.5044 22 6 7.8733 -0.0170 -4.7425 23 6 7.0620 -0.2440 -5.7767 24 16 5.5386 -0.9052 -5.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7091 1.1614 3.4844 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5819 -1.9865 31 1 1.5295 -2.5969 -0.4708 32 1 5.0124 0.5164 0.1297 33 1 6.2422 0.8950 -1.1003 34 1 4.7306 1.8325 -1.0351 35 1 5.9852 -1.6039 -1.5499 36 1 4.6208 -2.0475 -2.6035 37 1 7.8935 -0.2022 -2.5848 38 1 8.8681 0.3860 -4.8622 39 1 7.3052 -0.0555 -6.8120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283040522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:14 Heat of formation + Delta-G solvation = -50.954144 kcal Electronic energy + Delta-G solvation = -23630.137468 eV Core-core repulsion = 20212.112932 eV Total energy + Delta-G solvation = -3418.024535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.04652 -38.36848 -37.87850 -36.97485 -36.81709 -34.49549 -31.53186 -30.93391 -28.14129 -27.25455 -27.00158 -25.70212 -23.78726 -22.55896 -20.37936 -19.76331 -18.73360 -18.50558 -18.34795 -17.94969 -17.26508 -16.58449 -16.32987 -15.76723 -15.23597 -15.03292 -14.81678 -14.48263 -14.27321 -13.72744 -13.69161 -13.65757 -13.61740 -13.42953 -13.27431 -13.17005 -13.07429 -12.96275 -12.73990 -12.69567 -12.54884 -12.27695 -12.15337 -12.11666 -11.85830 -11.49744 -11.18956 -10.48129 -10.16239 -9.72458 -9.56547 -9.37359 -8.07115 -6.22334 -0.39335 0.13167 0.78068 1.21098 1.47519 1.49646 1.58497 1.81420 2.07741 2.47340 2.58173 3.21432 3.37604 3.74669 3.85635 4.13640 4.27351 4.31106 4.53960 4.68120 4.71544 4.75170 4.76983 4.79147 4.92043 4.95335 5.01171 5.04587 5.14811 5.24090 5.25414 5.40119 5.47917 5.62173 5.65136 5.74818 5.87833 6.11028 6.29824 6.86979 7.47545 8.97658 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.004484 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.092807 B = 6242.814487 C = 6812.361551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.022 0.978 4 C -0.527 4.527 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.264 1.264 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.785 3.215 15 O -0.991 6.991 16 O -1.018 7.018 17 N -1.000 6.000 18 C 0.088 3.912 19 C 0.193 3.807 20 C -0.216 4.216 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.220 4.220 24 S 0.075 5.925 25 H 0.070 0.930 26 H 0.015 0.985 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 -5.538 -10.518 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.566 4.566 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.189 1.189 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.795 3.205 15 O -0.975 6.975 16 O -1.003 7.003 17 N -0.839 5.839 18 C -0.057 4.057 19 C 0.067 3.933 20 C -0.336 4.336 21 C -0.152 4.152 22 C -0.174 4.174 23 C -0.356 4.356 24 S 0.339 5.661 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 11.792 -5.408 -11.841 17.564 hybrid contribution 1.155 0.284 1.805 2.161 sum 12.947 -5.125 -10.036 17.164 Atomic orbital electron populations 1.21953 0.98106 1.00034 0.99809 1.18396 0.91816 0.91355 0.81588 0.95971 1.21591 1.31534 1.13081 0.90425 0.91127 1.25689 0.95142 0.95567 1.01836 1.70021 1.37418 1.24060 1.24312 0.85541 0.77871 0.79247 0.78838 1.20193 1.21613 1.18867 1.57713 1.65022 1.22471 1.38678 1.21380 1.00353 0.80498 1.02199 1.01658 0.73177 0.72576 0.73100 1.93533 1.86305 1.75897 1.41731 1.93509 1.84662 1.34827 1.87262 1.57784 1.29144 1.36632 1.60350 1.21600 1.00266 0.91274 0.92574 1.19797 0.95141 0.86349 0.92029 1.25121 0.99900 1.10870 0.97676 1.20487 0.94300 1.00162 1.00265 1.20502 1.02332 1.03357 0.91211 1.26100 0.96772 1.08043 1.04638 1.85139 1.17133 1.63182 1.00680 0.91113 0.96582 0.93707 0.92766 0.93173 0.90717 0.90423 0.92243 0.87902 0.92348 0.85609 0.89406 0.82038 0.81724 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 8.97 71.98 0.65 -6.12 16 2 C 0.27 13.41 2.62 44.25 0.12 13.52 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.24 16 4 C -0.53 -26.27 7.99 25.60 0.20 -26.07 16 5 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -50.55 11.32 21.45 0.24 -50.30 16 8 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 9 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 12 N -1.00 -41.08 3.12 -520.42 -1.62 -42.70 16 13 C 0.10 3.44 9.28 127.77 1.19 4.63 16 14 S 2.78 110.93 6.01 -56.49 -0.34 110.59 16 15 O -0.99 -39.05 15.60 -128.00 -2.00 -41.05 16 16 O -1.02 -48.74 15.30 -128.00 -1.96 -50.70 16 17 N -1.00 -31.59 3.23 -543.21 -1.75 -33.34 16 18 C 0.09 2.58 10.68 127.77 1.36 3.94 16 19 C 0.19 4.83 5.81 85.63 0.50 5.32 16 20 C -0.22 -5.35 6.09 24.59 0.15 -5.20 16 21 C -0.12 -2.41 10.05 21.22 0.21 -2.19 16 22 C -0.14 -2.62 10.18 21.22 0.22 -2.40 16 23 C -0.22 -4.39 11.23 66.72 0.75 -3.64 16 24 S 0.08 1.99 22.74 -56.49 -1.28 0.71 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.04 2.00 7.67 -2.39 -0.02 1.98 16 28 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.11 7.44 -2.39 -0.02 2.09 16 31 H 0.08 2.67 7.02 -2.39 -0.02 2.65 16 32 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.10 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 35 H 0.13 2.37 8.11 -2.39 -0.02 2.35 16 36 H 0.09 2.18 7.26 -2.38 -0.02 2.16 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.80 346.20 0.15 -65.65 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.04 Total: 15.57 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 5.79 Total: -16.87 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -3.13 Total: -126.35 kcal Atomic # 8 Polarization: -87.79 SS G_CDS: -3.96 Total: -91.75 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 112.92 SS G_CDS: -1.62 Total: 111.30 kcal Total: -65.80 0.15 -65.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283040522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.693 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds