Wall clock time and date at job start Tue Mar 31 2020 12:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 120.00486 * 270.00030 * 17 14 12 19 19 C 1.46508 * 119.99730 * 90.00116 * 17 14 12 20 20 C 1.50704 * 109.46631 * 95.00321 * 19 17 14 21 21 C 1.33387 * 125.20446 * 90.00195 * 20 19 17 22 22 C 1.38426 * 114.91827 * 179.97438 * 21 20 19 23 23 C 1.33384 * 114.92410 * 359.97438 * 22 21 20 24 24 S 1.75880 * 125.19971 * 269.68824 * 20 19 17 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09008 * 109.46924 * 89.99750 * 18 17 14 33 33 H 1.08999 * 109.47585 * 209.99713 * 18 17 14 34 34 H 1.08999 * 109.47192 * 330.00622 * 18 17 14 35 35 H 1.08999 * 109.47085 * 214.99797 * 19 17 14 36 36 H 1.08996 * 109.47206 * 335.00402 * 19 17 14 37 37 H 1.07999 * 122.54034 * 359.95534 * 21 20 19 38 38 H 1.07999 * 122.53476 * 180.02562 * 22 21 20 39 39 H 1.08001 * 125.20663 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.4468 2.1631 3.1783 19 6 1.5812 0.0699 4.6064 20 6 2.5018 0.4488 5.7378 21 6 2.2942 1.4485 6.5962 22 6 3.2795 1.6077 7.5553 23 6 4.2869 0.7370 7.4762 24 16 4.0103 -0.3645 6.1331 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 0.5066 2.1097 2.6293 33 1 1.2792 2.6499 4.1391 34 1 2.1720 2.7372 2.6017 35 1 0.5541 0.3165 4.8756 36 1 1.6602 -1.0005 4.4166 37 1 1.4236 2.0856 6.5464 38 1 3.2355 2.3780 8.3110 39 1 5.1399 0.7099 8.1381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283040523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:18 Heat of formation + Delta-G solvation = -29.787288 kcal Electronic energy + Delta-G solvation = -23523.589998 eV Core-core repulsion = 20106.483327 eV Total energy + Delta-G solvation = -3417.106672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.14299 -36.72451 -36.16880 -35.85986 -35.19610 -32.58298 -30.58695 -29.10838 -27.16489 -25.60846 -25.15507 -24.64905 -22.85423 -20.70585 -19.43287 -18.34771 -17.44591 -17.18685 -16.80883 -16.24431 -15.79213 -15.44656 -14.88993 -14.30386 -13.98015 -13.50579 -13.38835 -13.11404 -12.85493 -12.78316 -12.74542 -12.48477 -12.32988 -11.97716 -11.78670 -11.63842 -11.36161 -11.31031 -11.23488 -11.10340 -10.96495 -10.80004 -10.57226 -10.47021 -10.28820 -10.01592 -9.27791 -9.02832 -8.74775 -8.45257 -8.41288 -7.97086 -6.07539 -4.14030 0.87415 1.22856 1.68770 2.09056 2.69298 3.30515 3.34726 3.38068 3.48293 4.07100 4.40215 4.74657 4.82818 4.87285 5.02269 5.23755 5.31943 5.42613 5.50395 5.54246 5.60109 5.77341 5.98867 6.01482 6.10708 6.12960 6.24739 6.35458 6.43839 6.58231 6.66168 6.77051 6.81798 7.00915 7.45583 7.62617 7.78336 8.03410 8.27239 8.87832 9.51707 10.98146 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.003927 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.012738 B = 7128.034371 C = 7413.898339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.773 3.227 15 O -0.986 6.986 16 O -0.970 6.970 17 N -1.009 6.009 18 C 0.087 3.913 19 C 0.198 3.802 20 C -0.200 4.200 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.230 4.230 24 S 0.148 5.852 25 H 0.033 0.967 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 0.076 18.065 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.036 4.036 14 S 2.782 3.218 15 O -0.970 6.970 16 O -0.954 6.954 17 N -0.847 5.847 18 C -0.058 4.058 19 C 0.071 3.929 20 C -0.320 4.320 21 C -0.162 4.162 22 C -0.172 4.172 23 C -0.367 4.367 24 S 0.412 5.588 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.477 -0.964 17.294 17.327 hybrid contribution -0.862 0.828 -0.200 1.212 sum -0.385 -0.136 17.093 17.098 Atomic orbital electron populations 1.22121 0.98286 0.99721 1.00588 1.18728 0.91277 0.92969 0.80541 0.92441 1.21296 1.31645 1.13024 0.90055 0.92029 1.24904 0.94944 0.95008 0.98978 1.69845 1.36499 1.22697 1.23886 0.86558 0.79389 0.79587 0.81886 1.21191 1.20137 1.20226 1.57786 1.70066 1.19741 1.35654 1.21141 1.01757 0.82142 0.98549 1.02273 0.73848 0.73247 0.72391 1.93536 1.68848 1.60242 1.74383 1.93587 1.73790 1.55926 1.72115 1.58249 1.68143 1.25212 1.33055 1.21523 1.00127 0.82157 1.02011 1.19536 0.96186 0.96036 0.81184 1.25132 1.01218 1.02587 1.03080 1.20091 1.01208 0.98913 0.95982 1.20117 0.94627 1.01324 1.01126 1.25839 1.04255 1.02493 1.04092 1.84990 1.17723 1.32201 1.23882 0.94777 0.97062 0.88862 0.92641 0.93213 0.93543 0.90976 0.92367 0.91400 0.90015 0.88681 0.89284 0.84485 0.84703 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.51 2.62 -69.09 -0.18 6.33 16 3 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 4 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.62 11.32 55.43 0.63 -24.00 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.99 -20.50 3.12 -115.86 -0.36 -20.86 16 13 C 0.11 1.95 9.53 59.85 0.57 2.52 16 14 S 2.77 55.05 6.01 -107.50 -0.65 54.40 16 15 O -0.99 -19.81 15.60 -57.17 -0.89 -20.70 16 16 O -0.97 -23.00 15.31 -57.17 -0.88 -23.87 16 17 N -1.01 -15.48 3.23 -123.04 -0.40 -15.87 16 18 C 0.09 1.19 10.68 59.85 0.64 1.83 16 19 C 0.20 2.49 5.82 -5.19 -0.03 2.46 16 20 C -0.20 -2.57 6.09 -36.00 -0.22 -2.79 16 21 C -0.13 -1.44 10.05 -41.21 -0.41 -1.86 16 22 C -0.14 -1.48 10.18 -41.21 -0.42 -1.89 16 23 C -0.23 -2.52 11.23 29.04 0.33 -2.20 16 24 S 0.15 1.99 22.74 -107.50 -2.45 -0.46 16 25 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.67 7.44 -51.93 -0.39 0.28 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 32 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 1.25 7.02 -51.93 -0.36 0.89 16 35 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.09 1.10 7.26 -51.93 -0.38 0.72 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -31.64 345.52 -9.98 -41.62 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.39 Total: -0.34 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 0.22 Total: -11.24 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.13 Total: -60.72 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.77 Total: -44.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 57.03 SS G_CDS: -3.09 Total: 53.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.64 -9.98 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283040523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.832 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds