Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 120.00486 * 270.00030 * 17 14 12 19 19 C 1.46508 * 119.99730 * 90.00116 * 17 14 12 20 20 C 1.50704 * 109.46631 * 95.00321 * 19 17 14 21 21 C 1.33387 * 125.20446 * 90.00195 * 20 19 17 22 22 C 1.38426 * 114.91827 * 179.97438 * 21 20 19 23 23 C 1.33384 * 114.92410 * 359.97438 * 22 21 20 24 24 S 1.75880 * 125.19971 * 269.68824 * 20 19 17 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09008 * 109.46924 * 89.99750 * 18 17 14 33 33 H 1.08999 * 109.47585 * 209.99713 * 18 17 14 34 34 H 1.08999 * 109.47192 * 330.00622 * 18 17 14 35 35 H 1.08999 * 109.47085 * 214.99797 * 19 17 14 36 36 H 1.08996 * 109.47206 * 335.00402 * 19 17 14 37 37 H 1.07999 * 122.54034 * 359.95534 * 21 20 19 38 38 H 1.07999 * 122.53476 * 180.02562 * 22 21 20 39 39 H 1.08001 * 125.20663 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.4468 2.1631 3.1783 19 6 1.5812 0.0699 4.6064 20 6 2.5018 0.4488 5.7378 21 6 2.2942 1.4485 6.5962 22 6 3.2795 1.6077 7.5553 23 6 4.2869 0.7370 7.4762 24 16 4.0103 -0.3645 6.1331 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 0.5066 2.1097 2.6293 33 1 1.2792 2.6499 4.1391 34 1 2.1720 2.7372 2.6017 35 1 0.5541 0.3165 4.8756 36 1 1.6602 -1.0005 4.4166 37 1 1.4236 2.0856 6.5464 38 1 3.2355 2.3780 8.3110 39 1 5.1399 0.7099 8.1381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283040523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = -50.703424 kcal Electronic energy + Delta-G solvation = -23524.496990 eV Core-core repulsion = 20106.483327 eV Total energy + Delta-G solvation = -3418.013663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.04864 -38.36240 -37.88780 -36.98417 -36.80662 -34.52909 -31.54765 -30.90936 -28.14839 -27.28627 -27.00690 -25.71404 -23.79644 -22.50865 -20.36992 -19.75523 -18.77187 -18.67355 -18.22880 -17.93755 -17.26496 -16.61132 -16.33736 -15.79010 -15.29137 -14.94465 -14.87470 -14.57566 -14.28507 -13.79180 -13.70264 -13.62991 -13.58249 -13.40108 -13.27717 -13.14058 -13.05777 -12.98468 -12.79101 -12.60388 -12.54823 -12.33943 -12.17556 -12.11130 -11.85101 -11.48767 -11.15407 -10.50870 -10.19491 -9.72550 -9.57708 -9.38101 -8.11955 -6.25458 -0.42459 0.13283 0.78318 1.21563 1.42281 1.44319 1.51282 1.82727 2.10680 2.42677 2.59467 3.16043 3.37535 3.74830 3.85445 4.11933 4.27277 4.30431 4.52350 4.66106 4.70468 4.74725 4.76030 4.80543 4.93064 4.93585 5.04185 5.06218 5.14630 5.17626 5.23993 5.39678 5.48554 5.61480 5.65601 5.80094 5.88713 6.14906 6.30865 6.81418 7.43301 8.91872 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.003927 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.012738 B = 7128.034371 C = 7413.898339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.023 0.977 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.998 5.998 13 C 0.105 3.895 14 S 2.782 3.218 15 O -0.994 6.994 16 O -1.018 7.018 17 N -1.001 6.001 18 C 0.083 3.917 19 C 0.193 3.807 20 C -0.217 4.217 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.221 4.221 24 S 0.069 5.931 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 0.317 20.003 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.793 3.207 15 O -0.977 6.977 16 O -1.002 7.002 17 N -0.841 5.841 18 C -0.062 4.062 19 C 0.066 3.934 20 C -0.336 4.336 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.357 4.357 24 S 0.332 5.668 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.106 0.894 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.816 -0.747 19.240 19.272 hybrid contribution -0.441 0.814 -0.635 1.123 sum -1.258 0.067 18.606 18.649 Atomic orbital electron populations 1.21903 0.96572 1.00253 1.00622 1.18397 0.92425 0.91194 0.81118 0.95928 1.21628 1.31806 1.13077 0.91658 0.92853 1.25611 0.95186 0.95716 1.01537 1.69957 1.37113 1.23549 1.24430 0.85697 0.78418 0.79137 0.78912 1.20470 1.20642 1.19090 1.57683 1.70042 1.20989 1.35196 1.21330 1.01662 0.80347 1.00732 1.01736 0.74021 0.72561 0.72428 1.93522 1.69488 1.60513 1.74214 1.93521 1.75423 1.57495 1.73715 1.57870 1.67566 1.25763 1.32874 1.21685 0.99472 0.81106 1.03914 1.19854 0.98013 0.95751 0.79747 1.25139 1.00706 1.03604 1.04135 1.20496 1.01819 0.97894 0.94834 1.20524 0.93926 1.01533 1.01428 1.26093 1.05239 1.01382 1.02953 1.85243 1.20047 1.34814 1.26678 0.93884 0.94270 0.91476 0.92572 0.94233 0.90262 0.90290 0.91607 0.87594 0.92443 0.84907 0.89430 0.81659 0.81689 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.95 71.98 0.64 -5.25 16 2 C 0.27 13.46 2.62 44.24 0.12 13.58 16 3 H 0.02 1.28 6.91 -2.38 -0.02 1.26 16 4 C -0.54 -29.73 8.37 25.60 0.21 -29.51 16 5 H 0.05 2.93 7.65 -2.91 -0.02 2.91 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.08 11.32 21.45 0.24 -50.84 16 8 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 N -1.00 -41.32 3.12 -520.46 -1.62 -42.95 16 13 C 0.10 3.60 9.53 127.77 1.22 4.82 16 14 S 2.78 111.17 6.01 -56.49 -0.34 110.83 16 15 O -0.99 -40.19 15.60 -128.00 -2.00 -42.19 16 16 O -1.02 -49.99 15.31 -128.00 -1.96 -51.95 16 17 N -1.00 -29.12 3.23 -543.20 -1.75 -30.87 16 18 C 0.08 2.11 10.68 127.77 1.36 3.48 16 19 C 0.19 4.33 5.82 85.63 0.50 4.83 16 20 C -0.22 -5.05 6.09 24.59 0.15 -4.90 16 21 C -0.12 -2.19 10.05 21.22 0.21 -1.97 16 22 C -0.14 -2.50 10.18 21.22 0.22 -2.28 16 23 C -0.22 -4.35 11.23 66.72 0.75 -3.60 16 24 S 0.07 1.81 22.74 -56.49 -1.28 0.52 16 25 H 0.04 1.77 6.66 -2.39 -0.02 1.75 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 3.33 6.07 -2.39 -0.01 3.32 16 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.17 7.44 -2.38 -0.02 2.15 16 31 H 0.08 2.58 6.43 -2.39 -0.02 2.57 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.11 1.86 8.07 -2.39 -0.02 1.84 16 34 H 0.06 1.76 7.02 -2.39 -0.02 1.74 16 35 H 0.13 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.09 1.99 7.26 -2.39 -0.02 1.97 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -70.45 345.52 0.19 -70.26 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.05 Total: 10.93 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 5.83 Total: -19.30 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -3.13 Total: -124.66 kcal Atomic # 8 Polarization: -90.18 SS G_CDS: -3.96 Total: -94.14 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 112.98 SS G_CDS: -1.62 Total: 111.35 kcal Total: -70.45 0.19 -70.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283040523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.557 kcal (2) G-P(sol) polarization free energy of solvation -70.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds