Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47021 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99979 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.89785 * 6 4 2 8 8 Si 1.86804 * 120.00107 * 5.17501 * 6 4 2 9 9 H 1.48493 * 109.47271 * 269.72415 * 8 6 4 10 10 H 1.48501 * 109.46725 * 29.72337 * 8 6 4 11 11 H 1.48499 * 109.47261 * 149.72095 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00146 * 2 1 3 13 13 C 1.46505 * 120.00300 * 60.00120 * 12 2 1 14 14 S 1.65602 * 120.00030 * 240.00007 * 12 2 1 15 15 O 1.42099 * 106.40456 * 203.53664 * 14 12 2 16 16 O 1.42107 * 106.40247 * 336.46240 * 14 12 2 17 17 N 1.65604 * 107.21736 * 89.99816 * 14 12 2 18 18 C 1.46504 * 119.99687 * 65.00410 * 17 14 12 19 19 C 1.52999 * 109.46803 * 164.99981 * 18 17 14 20 20 C 1.50703 * 109.46863 * 179.97438 * 19 18 17 21 21 C 1.33393 * 125.19825 * 90.00276 * 20 19 18 22 22 C 1.38426 * 114.91864 * 179.97438 * 21 20 19 23 23 C 1.33396 * 114.91962 * 359.97438 * 22 21 20 24 24 S 1.75879 * 125.20532 * 269.69013 * 20 19 18 25 25 H 1.08998 * 109.47541 * 294.89943 * 1 2 3 26 26 H 1.08997 * 109.47518 * 54.90587 * 1 2 3 27 27 H 1.09004 * 109.47390 * 174.90243 * 1 2 3 28 28 H 0.97000 * 119.99849 * 355.27532 * 7 6 4 29 29 H 1.08993 * 109.46971 * 89.99776 * 13 12 2 30 30 H 1.08997 * 109.46779 * 210.00058 * 13 12 2 31 31 H 1.08996 * 109.46769 * 330.00263 * 13 12 2 32 32 H 0.97000 * 120.00074 * 244.99751 * 17 14 12 33 33 H 1.08999 * 109.46685 * 284.99363 * 18 17 14 34 34 H 1.08998 * 109.47420 * 44.99881 * 18 17 14 35 35 H 1.09000 * 109.47576 * 299.99680 * 19 18 17 36 36 H 1.08998 * 109.47213 * 59.99774 * 19 18 17 37 37 H 1.07993 * 122.54236 * 359.95188 * 21 20 19 38 38 H 1.07998 * 122.54103 * 180.02562 * 22 21 20 39 39 H 1.07998 * 125.19967 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1461 -0.8448 -3.5570 8 14 0.9745 1.4931 -2.6419 9 1 -0.4983 1.3180 -2.7140 10 1 1.3165 2.3282 -1.4625 11 1 1.4546 2.1616 -3.8778 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1830 1.5748 17 7 1.9606 0.8090 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6086 0.8074 5.4378 20 6 -0.2248 -0.0610 6.3446 21 6 0.2366 -0.7405 7.3957 22 6 -0.7177 -1.4713 8.0823 23 6 -1.9541 -1.3848 7.5891 24 16 -1.9558 -0.3273 6.1837 25 1 -0.3634 0.4327 0.9321 26 1 -0.3634 0.5908 -0.8408 27 1 -0.3634 -1.0236 -0.0913 28 1 2.6358 -1.6779 -3.4731 29 1 2.4157 -2.7377 0.9716 30 1 1.6238 -2.2852 2.5001 31 1 0.6905 -2.3003 0.9846 32 1 1.9054 1.7750 3.4682 33 1 0.3188 -0.4567 3.7177 34 1 1.7669 -0.8424 4.6782 35 1 1.4407 1.2289 6.0018 36 1 -0.0074 1.6145 5.0413 37 1 1.2759 -0.7222 7.6885 38 1 -0.4794 -2.0658 8.9519 39 1 -2.8220 -1.8845 7.9934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283057875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = -44.873949 kcal Electronic energy + Delta-G solvation = -22838.825909 eV Core-core repulsion = 19421.065031 eV Total energy + Delta-G solvation = -3417.760878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.34104 -36.83147 -36.43222 -35.86135 -35.35064 -32.56076 -31.87187 -29.91382 -27.66858 -25.80636 -24.62687 -24.28303 -22.46644 -20.72650 -19.52933 -18.97323 -17.64614 -17.55432 -17.02826 -16.76084 -16.15601 -15.69695 -15.11326 -14.82736 -14.14718 -13.72586 -13.41266 -13.26949 -13.21998 -13.04504 -12.81430 -12.68160 -12.29258 -12.13488 -12.06515 -11.77292 -11.66081 -11.58549 -11.52814 -11.44493 -11.29706 -10.95512 -10.86566 -10.47325 -10.05520 -9.76422 -9.48467 -9.01400 -8.91147 -8.72191 -8.49984 -8.16212 -6.45305 -4.13265 0.70693 1.06667 1.37764 1.75043 2.48409 3.32087 3.34453 3.44367 3.56076 3.97415 4.44530 4.50027 4.69645 4.75912 4.83396 4.90927 5.15668 5.23044 5.30581 5.35816 5.42692 5.55835 5.64321 5.87073 5.92348 5.98940 6.03646 6.18752 6.22460 6.25780 6.32790 6.50023 6.52723 6.83170 7.01093 7.28977 7.46765 7.92190 8.35749 8.86919 9.57256 10.93100 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003706 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.446158 B = 7554.130540 C = 8131.344018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.056 0.944 4 C -0.596 4.596 5 H 0.064 0.936 6 C 0.030 3.970 7 N -0.909 5.909 8 Si 1.048 2.952 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.983 5.983 13 C 0.110 3.890 14 S 2.779 3.221 15 O -0.991 6.991 16 O -0.973 6.973 17 N -1.135 6.135 18 C 0.125 3.875 19 C -0.056 4.056 20 C -0.172 4.172 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.217 4.217 24 S 0.103 5.897 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.268 0.732 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 1.557 22.546 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.636 4.636 5 H 0.083 0.917 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.878 3.122 9 H -0.209 1.209 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.825 5.825 13 C -0.037 4.037 14 S 2.788 3.212 15 O -0.974 6.974 16 O -0.957 6.957 17 N -0.894 5.894 18 C -0.002 4.002 19 C -0.096 4.096 20 C -0.290 4.290 21 C -0.168 4.168 22 C -0.164 4.164 23 C -0.353 4.353 24 S 0.366 5.634 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.551 2.968 20.430 22.747 hybrid contribution 1.088 -1.419 2.135 2.785 sum -8.463 1.549 22.566 24.150 Atomic orbital electron populations 1.22439 0.99034 1.01489 0.98918 1.19192 0.90535 0.93673 0.83238 0.92641 1.22253 1.39898 1.10719 0.90728 0.91738 1.25720 0.96576 1.03370 0.91841 1.70804 1.36484 1.16869 1.30183 0.83972 0.76162 0.75850 0.76247 1.20917 1.20127 1.21321 1.57472 1.70076 1.19874 1.35124 1.21178 1.01820 0.81870 0.98799 1.01985 0.73588 0.73203 0.72420 1.93548 1.68850 1.60641 1.74385 1.93615 1.74200 1.56011 1.71890 1.56254 1.62678 1.17392 1.53076 1.21212 0.95126 0.93267 0.90603 1.20328 0.98393 0.96391 0.94502 1.24373 0.96898 1.05881 1.01892 1.20192 1.01263 0.99176 0.96169 1.20181 0.92186 1.01995 1.02067 1.25643 1.01798 1.06454 1.01383 1.84431 1.05097 1.45025 1.28828 0.95078 0.92956 0.92473 0.92171 0.93060 0.93155 0.90959 0.75458 0.91510 0.90188 0.89057 0.89882 0.84116 0.84318 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.65 37.16 0.32 -2.86 16 2 C 0.24 5.50 2.20 -69.09 -0.15 5.35 16 3 H 0.06 1.35 5.41 -51.93 -0.28 1.07 16 4 C -0.60 -16.42 8.77 -34.44 -0.30 -16.72 16 5 H 0.06 1.91 7.74 -52.49 -0.41 1.50 16 6 C 0.03 0.86 5.43 -17.82 -0.10 0.76 16 7 N -0.91 -27.71 13.70 55.43 0.76 -26.95 16 8 Si 1.05 25.09 25.28 -169.99 -4.30 20.79 16 9 H -0.28 -6.24 6.82 56.52 0.39 -5.86 16 10 H -0.28 -6.19 6.35 56.52 0.36 -5.83 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.98 -19.67 3.12 -115.86 -0.36 -20.03 16 13 C 0.11 1.92 9.48 59.85 0.57 2.48 16 14 S 2.78 52.06 6.09 -107.50 -0.66 51.40 16 15 O -0.99 -20.05 16.68 -57.17 -0.95 -21.00 16 16 O -0.97 -21.73 16.70 -57.17 -0.95 -22.69 16 17 N -1.14 -15.02 6.05 -10.61 -0.06 -15.08 16 18 C 0.13 1.41 6.23 -4.04 -0.03 1.38 16 19 C -0.06 -0.49 5.85 -27.88 -0.16 -0.65 16 20 C -0.17 -1.59 5.76 -36.00 -0.21 -1.80 16 21 C -0.14 -1.21 10.05 -41.21 -0.41 -1.62 16 22 C -0.13 -1.08 10.18 -41.20 -0.42 -1.50 16 23 C -0.22 -1.73 11.23 29.04 0.33 -1.40 16 24 S 0.10 0.91 23.33 -107.50 -2.51 -1.60 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.07 4.41 -51.93 -0.23 0.84 16 27 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 28 H 0.27 8.16 8.72 -40.82 -0.36 7.80 16 29 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 31 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 32 H 0.41 4.52 8.65 -34.47 -0.30 4.23 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -34.09 343.79 -9.73 -43.82 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.31 Total: 2.74 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.57 Total: -16.59 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.33 Total: -62.06 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.91 Total: -43.69 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.30 Total: 20.79 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -3.16 Total: 49.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.09 -9.73 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283057875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.057 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds