Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47021 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99979 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.89785 * 6 4 2 8 8 Si 1.86804 * 120.00107 * 5.17501 * 6 4 2 9 9 H 1.48493 * 109.47271 * 269.72415 * 8 6 4 10 10 H 1.48501 * 109.46725 * 29.72337 * 8 6 4 11 11 H 1.48499 * 109.47261 * 149.72095 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00146 * 2 1 3 13 13 C 1.46505 * 120.00300 * 60.00120 * 12 2 1 14 14 S 1.65602 * 120.00030 * 240.00007 * 12 2 1 15 15 O 1.42099 * 106.40456 * 203.53664 * 14 12 2 16 16 O 1.42107 * 106.40247 * 336.46240 * 14 12 2 17 17 N 1.65604 * 107.21736 * 89.99816 * 14 12 2 18 18 C 1.46504 * 119.99687 * 65.00410 * 17 14 12 19 19 C 1.52999 * 109.46803 * 164.99981 * 18 17 14 20 20 C 1.50703 * 109.46863 * 179.97438 * 19 18 17 21 21 C 1.33393 * 125.19825 * 90.00276 * 20 19 18 22 22 C 1.38426 * 114.91864 * 179.97438 * 21 20 19 23 23 C 1.33396 * 114.91962 * 359.97438 * 22 21 20 24 24 S 1.75879 * 125.20532 * 269.69013 * 20 19 18 25 25 H 1.08998 * 109.47541 * 294.89943 * 1 2 3 26 26 H 1.08997 * 109.47518 * 54.90587 * 1 2 3 27 27 H 1.09004 * 109.47390 * 174.90243 * 1 2 3 28 28 H 0.97000 * 119.99849 * 355.27532 * 7 6 4 29 29 H 1.08993 * 109.46971 * 89.99776 * 13 12 2 30 30 H 1.08997 * 109.46779 * 210.00058 * 13 12 2 31 31 H 1.08996 * 109.46769 * 330.00263 * 13 12 2 32 32 H 0.97000 * 120.00074 * 244.99751 * 17 14 12 33 33 H 1.08999 * 109.46685 * 284.99363 * 18 17 14 34 34 H 1.08998 * 109.47420 * 44.99881 * 18 17 14 35 35 H 1.09000 * 109.47576 * 299.99680 * 19 18 17 36 36 H 1.08998 * 109.47213 * 59.99774 * 19 18 17 37 37 H 1.07993 * 122.54236 * 359.95188 * 21 20 19 38 38 H 1.07998 * 122.54103 * 180.02562 * 22 21 20 39 39 H 1.07998 * 125.19967 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1461 -0.8448 -3.5570 8 14 0.9745 1.4931 -2.6419 9 1 -0.4983 1.3180 -2.7140 10 1 1.3165 2.3282 -1.4625 11 1 1.4546 2.1616 -3.8778 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1830 1.5748 17 7 1.9606 0.8090 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6086 0.8074 5.4378 20 6 -0.2248 -0.0610 6.3446 21 6 0.2366 -0.7405 7.3957 22 6 -0.7177 -1.4713 8.0823 23 6 -1.9541 -1.3848 7.5891 24 16 -1.9558 -0.3273 6.1837 25 1 -0.3634 0.4327 0.9321 26 1 -0.3634 0.5908 -0.8408 27 1 -0.3634 -1.0236 -0.0913 28 1 2.6358 -1.6779 -3.4731 29 1 2.4157 -2.7377 0.9716 30 1 1.6238 -2.2852 2.5001 31 1 0.6905 -2.3003 0.9846 32 1 1.9054 1.7750 3.4682 33 1 0.3188 -0.4567 3.7177 34 1 1.7669 -0.8424 4.6782 35 1 1.4407 1.2289 6.0018 36 1 -0.0074 1.6145 5.0413 37 1 1.2759 -0.7222 7.6885 38 1 -0.4794 -2.0658 8.9519 39 1 -2.8220 -1.8845 7.9934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283057875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = -70.536409 kcal Electronic energy + Delta-G solvation = -22839.938717 eV Core-core repulsion = 19421.065031 eV Total energy + Delta-G solvation = -3418.873686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.98907 -38.42027 -38.08971 -36.96548 -36.82059 -34.61967 -32.68560 -31.65685 -28.40481 -27.31693 -26.59921 -25.02814 -23.19770 -22.48979 -20.43522 -20.08891 -19.61380 -18.96518 -18.43594 -17.73401 -17.40997 -16.53288 -16.37535 -15.79781 -15.70201 -15.37039 -15.00503 -14.69320 -14.16392 -14.04352 -13.95574 -13.66074 -13.62595 -13.46224 -13.38068 -13.32662 -13.22684 -12.97171 -12.94387 -12.65687 -12.49751 -12.27299 -12.08903 -11.80306 -11.59176 -11.56171 -10.99554 -10.64796 -10.53720 -9.89711 -9.54532 -9.35377 -8.68871 -6.38897 -0.43616 0.11245 0.76012 1.14052 1.42949 1.56961 1.70192 1.85570 1.97300 2.48207 2.55881 3.10579 3.34150 3.79890 3.93722 3.96053 4.07160 4.29944 4.44816 4.47692 4.55149 4.60439 4.70055 4.72277 4.76068 4.81610 4.89833 4.91105 5.04862 5.10390 5.25092 5.28015 5.42992 5.57179 5.62958 5.73313 5.95089 6.04426 6.12847 6.59478 7.40860 8.66557 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003706 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.446158 B = 7554.130540 C = 8131.344018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.597 4.597 5 H 0.026 0.974 6 C -0.024 4.024 7 N -0.944 5.944 8 Si 1.080 2.920 9 H -0.248 1.248 10 H -0.252 1.252 11 H -0.294 1.294 12 N -0.993 5.993 13 C 0.105 3.895 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.013 7.013 17 N -1.114 6.114 18 C 0.119 3.881 19 C -0.049 4.049 20 C -0.185 4.185 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.217 4.217 24 S 0.086 5.914 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.251 0.749 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.426 0.574 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 2.741 25.108 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.636 4.636 5 H 0.044 0.956 6 C -0.221 4.221 7 N -0.581 5.581 8 Si 0.902 3.098 9 H -0.173 1.173 10 H -0.176 1.176 11 H -0.221 1.221 12 N -0.834 5.834 13 C -0.040 4.040 14 S 2.805 3.195 15 O -0.992 6.992 16 O -0.997 6.997 17 N -0.878 5.878 18 C -0.008 4.008 19 C -0.089 4.089 20 C -0.304 4.304 21 C -0.174 4.174 22 C -0.174 4.174 23 C -0.352 4.352 24 S 0.349 5.651 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.622 4.131 23.020 26.116 hybrid contribution 1.790 -1.897 1.494 3.006 sum -9.832 2.234 24.514 26.507 Atomic orbital electron populations 1.22302 0.95926 1.02074 1.01011 1.18996 0.92789 0.92631 0.82375 0.93451 1.22513 1.38595 1.09370 0.93153 0.95591 1.27157 0.96958 1.06292 0.91726 1.70937 1.38715 1.16987 1.31437 0.83637 0.77452 0.71960 0.76795 1.17279 1.17606 1.22124 1.57417 1.70129 1.20928 1.34902 1.21319 1.01451 0.80384 1.00891 1.01252 0.73534 0.72366 0.72397 1.93523 1.69748 1.61422 1.74546 1.93556 1.75658 1.57188 1.73290 1.55688 1.62135 1.18318 1.51672 1.21440 0.94858 0.93374 0.91107 1.20275 0.98896 0.96165 0.93614 1.24430 0.96980 1.06565 1.02376 1.20457 1.01995 0.98863 0.96071 1.20450 0.92104 1.02171 1.02702 1.25945 1.02576 1.05937 1.00772 1.84458 1.05271 1.45636 1.29688 0.90996 0.93169 0.92349 0.94008 0.95334 0.89773 0.90057 0.73718 0.90823 0.90586 0.87931 0.88705 0.83197 0.82525 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 8.65 71.98 0.62 -5.05 16 2 C 0.24 10.68 2.20 44.24 0.10 10.78 16 3 H 0.05 2.23 5.41 -2.39 -0.01 2.22 16 4 C -0.60 -33.47 8.77 25.60 0.22 -33.25 16 5 H 0.03 1.61 7.74 -2.91 -0.02 1.58 16 6 C -0.02 -1.37 5.43 84.66 0.46 -0.91 16 7 N -0.94 -59.46 13.70 21.45 0.29 -59.16 16 8 Si 1.08 49.35 25.28 68.60 1.73 51.08 16 9 H -0.25 -9.95 6.82 99.48 0.68 -9.27 16 10 H -0.25 -10.45 6.35 99.48 0.63 -9.82 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 N -0.99 -38.62 3.12 -520.48 -1.62 -40.24 16 13 C 0.11 3.58 9.48 127.77 1.21 4.79 16 14 S 2.80 101.20 6.09 -56.49 -0.34 100.86 16 15 O -1.01 -39.86 16.68 -128.00 -2.14 -41.99 16 16 O -1.01 -44.64 16.70 -128.00 -2.14 -46.78 16 17 N -1.11 -26.40 6.05 -187.49 -1.14 -27.54 16 18 C 0.12 2.30 6.23 86.38 0.54 2.84 16 19 C -0.05 -0.71 5.85 29.85 0.17 -0.53 16 20 C -0.19 -2.94 5.76 24.59 0.14 -2.80 16 21 C -0.14 -2.16 10.05 21.22 0.21 -1.94 16 22 C -0.14 -1.95 10.18 21.22 0.22 -1.74 16 23 C -0.22 -2.91 11.23 66.72 0.75 -2.16 16 24 S 0.09 1.33 23.33 -56.49 -1.32 0.01 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.87 4.41 -2.39 -0.01 1.86 16 27 H 0.06 2.12 6.88 -2.38 -0.02 2.10 16 28 H 0.25 16.10 8.72 -92.71 -0.81 15.29 16 29 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 30 H 0.08 2.26 7.79 -2.39 -0.02 2.24 16 31 H 0.08 2.59 6.53 -2.39 -0.02 2.58 16 32 H 0.43 8.02 8.65 -96.74 -0.84 7.18 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -75.61 343.79 -1.93 -77.54 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.09 Total: 16.19 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.65 Total: -29.97 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -2.47 Total: -126.94 kcal Atomic # 8 Polarization: -84.50 SS G_CDS: -4.27 Total: -88.77 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.73 Total: 51.08 kcal Atomic # 16 Polarization: 102.53 SS G_CDS: -1.66 Total: 100.87 kcal Total: -75.61 -1.93 -77.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283057875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.005 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds