Wall clock time and date at job start Tue Mar 31 2020 12:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86794 * 119.99939 * 2 1 4 4 H 1.48507 * 109.47046 * 239.98952 * 3 2 1 5 5 H 1.48490 * 109.47502 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47146 * 119.99571 * 3 2 1 7 7 C 1.39052 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 163.15610 * 7 2 1 9 9 N 1.36868 * 119.99733 * 343.15242 * 7 2 1 10 10 C 1.34779 * 119.99590 * 130.97906 * 9 7 2 11 11 O 1.21614 * 119.99957 * 184.47462 * 10 9 7 12 12 C 1.47595 * 120.00092 * 4.47358 * 10 9 7 13 13 C 1.40668 * 120.28073 * 330.03267 * 12 10 9 14 14 N 1.30782 * 121.51944 * 180.02562 * 13 12 10 15 15 C 1.33842 * 121.72449 * 359.97438 * 14 13 12 16 16 C 1.40659 * 120.81504 * 180.02562 * 15 14 13 17 17 F 1.35095 * 120.07837 * 359.96236 * 16 15 14 18 18 C 1.36379 * 119.83344 * 179.97438 * 16 15 14 19 19 C 1.39228 * 121.10494 * 359.97438 * 18 16 15 20 20 C 1.36408 * 120.82671 * 0.30201 * 19 18 16 21 21 F 1.35095 * 120.19499 * 179.72288 * 20 19 18 22 22 C 1.40782 * 119.60111 * 359.45546 * 20 19 18 23 23 C 1.39140 * 120.28007 * 150.05639 * 12 10 9 24 24 C 1.46499 * 120.00263 * 310.97736 * 9 7 2 25 25 C 1.52995 * 117.49992 * 1.71758 * 24 9 7 26 26 C 1.52993 * 60.00104 * 252.51256 * 25 24 9 27 27 H 0.97001 * 119.99698 * 5.06279 * 1 2 3 28 28 H 1.08003 * 119.24373 * 0.04563 * 13 12 10 29 29 H 1.07997 * 119.44443 * 180.02562 * 18 16 15 30 30 H 1.07998 * 119.58397 * 180.02562 * 19 18 16 31 31 H 1.08000 * 121.01675 * 359.97438 * 23 12 10 32 32 H 1.09003 * 115.54954 * 147.42786 * 24 9 7 33 33 H 1.08998 * 117.50067 * 359.97438 * 25 24 9 34 34 H 1.08997 * 117.50234 * 145.01932 * 25 24 9 35 35 H 1.09003 * 117.49718 * 252.51503 * 26 25 24 36 36 H 1.08996 * 117.52327 * 107.48005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1016 1.6962 -1.2124 5 1 1.2828 2.7464 -0.0006 6 1 3.1013 1.6964 1.2126 7 6 2.0089 -1.2042 0.0005 8 1 3.0542 -1.2244 -0.2705 9 7 1.3686 -2.3639 0.3446 10 6 1.4808 -3.4539 -0.4401 11 8 0.8477 -4.4589 -0.1791 12 6 2.3721 -3.4280 -1.6163 13 6 2.6074 -2.2222 -2.3014 14 7 3.3921 -2.1715 -3.3464 15 6 4.0103 -3.2618 -3.8159 16 6 4.8508 -3.1853 -4.9412 17 9 5.0427 -2.0018 -5.5637 18 6 5.4712 -4.3088 -5.4023 19 6 5.2887 -5.5393 -4.7769 20 6 4.4773 -5.6558 -3.6866 21 9 4.3050 -6.8571 -3.0931 22 6 3.8250 -4.5156 -3.1802 23 6 2.9863 -4.5961 -2.0570 24 6 0.5612 -2.4204 1.5658 25 6 0.4404 -1.1389 2.3927 26 6 1.2943 -2.3011 2.9034 27 1 -0.4850 0.8368 -0.0741 28 1 2.1293 -1.3173 -1.9563 29 1 6.1154 -4.2428 -6.2665 30 1 5.7924 -6.4133 -5.1626 31 1 2.8236 -5.5358 -1.5502 32 1 -0.3077 -3.0772 1.5249 33 1 0.9619 -0.2538 2.0284 34 1 -0.5082 -0.9521 2.8959 35 1 0.9073 -2.8791 3.7426 36 1 2.3772 -2.1810 2.8748 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293677802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:07 Heat of formation + Delta-G solvation = -20.142437 kcal Electronic energy + Delta-G solvation = -26203.004446 eV Core-core repulsion = 22097.031669 eV Total energy + Delta-G solvation = -4105.972777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.00612 -48.76539 -40.52910 -38.90419 -36.78437 -36.18447 -33.45755 -32.76169 -31.82455 -30.43395 -29.31983 -25.55797 -24.87984 -23.93015 -21.87645 -21.61820 -21.31623 -19.79901 -18.66721 -18.03025 -17.63354 -16.97215 -16.68617 -16.00451 -15.91100 -15.32744 -15.29876 -14.87282 -14.63892 -14.36997 -14.13218 -14.03232 -13.41291 -13.22935 -13.13105 -13.00532 -12.74172 -12.48945 -12.24042 -11.73583 -11.44268 -11.30210 -11.19318 -11.05186 -10.55968 -10.50426 -10.12632 -9.93687 -9.62259 -9.44380 -8.88987 -8.78693 -8.65533 -7.98074 -7.51798 -6.65314 -4.45813 0.25579 0.69023 1.83313 2.70898 3.00979 3.07985 3.09764 3.65740 3.83243 3.95625 4.09073 4.16218 4.29683 4.42715 4.51887 4.63745 4.85234 4.89965 5.04086 5.28190 5.44395 5.56422 5.71567 5.79176 5.84484 5.88365 6.00710 6.01698 6.04211 6.18071 6.39458 6.47169 6.61231 6.72143 6.91720 6.97086 7.13474 7.19913 7.74650 8.02978 8.12603 8.70995 9.13693 9.60091 10.33856 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.004883 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.049128 B = 5732.407135 C = 7216.973301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.061 3.939 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.398 5.398 10 C 0.522 3.478 11 O -0.590 6.590 12 C -0.126 4.126 13 C 0.185 3.815 14 N -0.485 5.485 15 C 0.124 3.876 16 C 0.116 3.884 17 F -0.121 7.121 18 C -0.123 4.123 19 C -0.144 4.144 20 C 0.121 3.879 21 F -0.129 7.129 22 C -0.123 4.123 23 C -0.025 4.025 24 C 0.106 3.894 25 C -0.143 4.143 26 C -0.216 4.216 27 H 0.278 0.722 28 H 0.215 0.785 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -4.355 -5.390 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.150 4.150 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.499 4.499 8 H 0.109 0.891 9 N -0.114 5.114 10 C 0.310 3.690 11 O -0.475 6.475 12 C -0.131 4.131 13 C 0.015 3.985 14 N -0.193 5.193 15 C 0.000 4.000 16 C 0.095 3.905 17 F -0.100 7.100 18 C -0.144 4.144 19 C -0.163 4.163 20 C 0.100 3.900 21 F -0.107 7.107 22 C -0.126 4.126 23 C -0.052 4.052 24 C 0.001 3.999 25 C -0.181 4.181 26 C -0.254 4.254 27 H 0.088 0.912 28 H 0.231 0.769 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.428 -3.907 -5.669 10.128 hybrid contribution 0.272 0.098 0.471 0.552 sum 7.699 -3.809 -5.198 10.040 Atomic orbital electron populations 1.69980 1.06183 1.28906 1.40835 1.25506 0.95281 0.99873 0.94373 0.86365 0.79925 0.80878 0.80169 1.18599 1.20255 1.19142 1.19319 0.95176 0.84365 1.51061 0.89105 1.42617 1.42380 1.09317 1.17095 1.17938 0.83771 0.84823 0.82428 1.90663 1.49058 1.34130 1.73673 1.21216 0.99056 0.94260 0.98610 1.25106 0.88435 0.99599 0.85355 1.68361 1.09748 1.27642 1.13530 1.18837 0.96861 0.89425 0.94836 1.17104 0.98729 0.81993 0.92635 1.91519 1.93350 1.44454 1.80649 1.20522 1.01458 0.90604 1.01798 1.20480 1.00873 0.98768 0.96156 1.17297 0.98723 0.80038 0.93919 1.91512 1.93970 1.42251 1.82975 1.18519 1.01923 0.93123 0.99020 1.21726 0.91432 0.99296 0.92722 1.21196 0.95876 1.00970 0.81889 1.23121 0.99835 0.93957 1.01177 1.23371 0.99245 1.04663 0.98163 0.91154 0.76919 0.83517 0.83699 0.83158 0.87439 0.87071 0.90411 0.90130 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.44 11.40 55.50 0.63 -18.81 16 2 C 0.06 1.37 2.77 -17.45 -0.05 1.32 16 3 Si 0.90 17.59 29.33 -169.99 -4.99 12.60 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.37 -8.45 5.35 -15.00 -0.08 -8.53 16 8 H 0.09 2.04 6.65 -52.49 -0.35 1.69 16 9 N -0.40 -9.34 2.75 -108.88 -0.30 -9.64 16 10 C 0.52 12.36 7.43 -12.44 -0.09 12.27 16 11 O -0.59 -15.16 16.53 5.27 0.09 -15.07 16 12 C -0.13 -2.65 5.61 -104.83 -0.59 -3.24 16 13 C 0.19 3.81 9.06 -17.08 -0.15 3.66 16 14 N -0.48 -9.63 10.17 -10.62 -0.11 -9.73 16 15 C 0.12 2.19 6.61 -84.72 -0.56 1.63 16 16 C 0.12 1.75 7.30 -39.34 -0.29 1.46 16 17 F -0.12 -1.92 17.11 2.25 0.04 -1.88 16 18 C -0.12 -1.40 9.91 -39.88 -0.40 -1.80 16 19 C -0.14 -1.60 9.93 -39.87 -0.40 -2.00 16 20 C 0.12 1.70 7.25 -39.28 -0.28 1.42 16 21 F -0.13 -1.82 16.67 2.25 0.04 -1.78 16 22 C -0.12 -2.07 5.74 -106.76 -0.61 -2.68 16 23 C -0.02 -0.47 9.29 -38.43 -0.36 -0.82 16 24 C 0.11 2.35 5.62 -67.94 -0.38 1.97 16 25 C -0.14 -2.92 8.24 -26.74 -0.22 -3.14 16 26 C -0.22 -4.15 10.38 -26.74 -0.28 -4.43 16 27 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 28 H 0.22 4.63 4.92 -52.48 -0.26 4.38 16 29 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.15 2.68 7.67 -52.49 -0.40 2.28 16 32 H 0.11 2.48 7.78 -51.93 -0.40 2.07 16 33 H 0.11 2.42 4.81 -51.93 -0.25 2.17 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -26.31 316.44 -7.48 -33.79 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.91 Total: 8.66 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.74 Total: -2.90 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.23 Total: -38.19 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -4.99 Total: 12.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.31 -7.48 -33.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293677802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.647 kcal (2) G-P(sol) polarization free energy of solvation -26.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds