Wall clock time and date at job start Tue Mar 31 2020 12:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86794 * 119.99939 * 2 1 4 4 H 1.48507 * 109.47046 * 239.98952 * 3 2 1 5 5 H 1.48490 * 109.47502 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47146 * 119.99571 * 3 2 1 7 7 C 1.39052 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 163.15610 * 7 2 1 9 9 N 1.36868 * 119.99733 * 343.15242 * 7 2 1 10 10 C 1.34779 * 119.99590 * 130.97906 * 9 7 2 11 11 O 1.21614 * 119.99957 * 184.47462 * 10 9 7 12 12 C 1.47595 * 120.00092 * 4.47358 * 10 9 7 13 13 C 1.40668 * 120.28073 * 330.03267 * 12 10 9 14 14 N 1.30782 * 121.51944 * 180.02562 * 13 12 10 15 15 C 1.33842 * 121.72449 * 359.97438 * 14 13 12 16 16 C 1.40659 * 120.81504 * 180.02562 * 15 14 13 17 17 F 1.35095 * 120.07837 * 359.96236 * 16 15 14 18 18 C 1.36379 * 119.83344 * 179.97438 * 16 15 14 19 19 C 1.39228 * 121.10494 * 359.97438 * 18 16 15 20 20 C 1.36408 * 120.82671 * 0.30201 * 19 18 16 21 21 F 1.35095 * 120.19499 * 179.72288 * 20 19 18 22 22 C 1.40782 * 119.60111 * 359.45546 * 20 19 18 23 23 C 1.39140 * 120.28007 * 150.05639 * 12 10 9 24 24 C 1.46499 * 120.00263 * 310.97736 * 9 7 2 25 25 C 1.52995 * 117.49992 * 1.71758 * 24 9 7 26 26 C 1.52993 * 60.00104 * 252.51256 * 25 24 9 27 27 H 0.97001 * 119.99698 * 5.06279 * 1 2 3 28 28 H 1.08003 * 119.24373 * 0.04563 * 13 12 10 29 29 H 1.07997 * 119.44443 * 180.02562 * 18 16 15 30 30 H 1.07998 * 119.58397 * 180.02562 * 19 18 16 31 31 H 1.08000 * 121.01675 * 359.97438 * 23 12 10 32 32 H 1.09003 * 115.54954 * 147.42786 * 24 9 7 33 33 H 1.08998 * 117.50067 * 359.97438 * 25 24 9 34 34 H 1.08997 * 117.50234 * 145.01932 * 25 24 9 35 35 H 1.09003 * 117.49718 * 252.51503 * 26 25 24 36 36 H 1.08996 * 117.52327 * 107.48005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1016 1.6962 -1.2124 5 1 1.2828 2.7464 -0.0006 6 1 3.1013 1.6964 1.2126 7 6 2.0089 -1.2042 0.0005 8 1 3.0542 -1.2244 -0.2705 9 7 1.3686 -2.3639 0.3446 10 6 1.4808 -3.4539 -0.4401 11 8 0.8477 -4.4589 -0.1791 12 6 2.3721 -3.4280 -1.6163 13 6 2.6074 -2.2222 -2.3014 14 7 3.3921 -2.1715 -3.3464 15 6 4.0103 -3.2618 -3.8159 16 6 4.8508 -3.1853 -4.9412 17 9 5.0427 -2.0018 -5.5637 18 6 5.4712 -4.3088 -5.4023 19 6 5.2887 -5.5393 -4.7769 20 6 4.4773 -5.6558 -3.6866 21 9 4.3050 -6.8571 -3.0931 22 6 3.8250 -4.5156 -3.1802 23 6 2.9863 -4.5961 -2.0570 24 6 0.5612 -2.4204 1.5658 25 6 0.4404 -1.1389 2.3927 26 6 1.2943 -2.3011 2.9034 27 1 -0.4850 0.8368 -0.0741 28 1 2.1293 -1.3173 -1.9563 29 1 6.1154 -4.2428 -6.2665 30 1 5.7924 -6.4133 -5.1626 31 1 2.8236 -5.5358 -1.5502 32 1 -0.3077 -3.0772 1.5249 33 1 0.9619 -0.2538 2.0284 34 1 -0.5082 -0.9521 2.8959 35 1 0.9073 -2.8791 3.7426 36 1 2.3772 -2.1810 2.8748 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293677802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:06 Heat of formation + Delta-G solvation = -33.799448 kcal Electronic energy + Delta-G solvation = -26203.596659 eV Core-core repulsion = 22097.031669 eV Total energy + Delta-G solvation = -4106.564990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.10828 -49.92946 -41.95793 -40.54403 -38.22706 -37.77243 -35.15124 -34.18190 -33.56478 -31.79491 -30.52098 -27.31663 -26.27937 -25.27909 -23.23397 -23.08993 -22.92436 -21.50555 -20.05027 -19.47218 -18.99740 -18.36823 -18.02613 -17.37704 -17.17313 -16.99451 -16.46354 -16.33232 -16.27804 -15.79883 -15.48371 -15.39727 -14.91049 -14.77730 -14.60939 -14.25081 -14.17386 -13.92936 -13.70215 -13.43121 -12.99387 -12.76771 -12.46813 -12.44730 -12.13098 -12.08445 -11.62112 -11.53616 -11.24913 -11.08869 -10.56042 -10.47048 -10.06156 -9.34075 -9.13387 -8.38640 -6.24474 -1.02075 -0.60244 0.48901 1.38883 1.46337 1.48665 1.53521 2.07620 2.20124 2.58866 2.74849 2.78861 2.86834 2.95495 3.16855 3.35784 3.49440 3.59828 3.68506 3.78645 4.08312 4.20418 4.28227 4.32937 4.35655 4.43944 4.64859 4.76927 4.81655 4.85244 4.97289 4.99315 5.07981 5.26913 5.28486 5.40939 5.53000 5.64144 5.98687 6.27556 6.66144 6.94673 7.34828 7.82888 8.62004 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.004883 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.049128 B = 5732.407135 C = 7216.973301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.038 3.962 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.404 5.404 10 C 0.509 3.491 11 O -0.624 6.624 12 C -0.155 4.155 13 C 0.177 3.823 14 N -0.500 5.500 15 C 0.106 3.894 16 C 0.090 3.910 17 F -0.129 7.129 18 C -0.082 4.082 19 C -0.111 4.111 20 C 0.111 3.889 21 F -0.129 7.129 22 C -0.132 4.132 23 C -0.016 4.016 24 C 0.070 3.930 25 C -0.134 4.134 26 C -0.189 4.189 27 H 0.280 0.720 28 H 0.196 0.804 29 H 0.196 0.804 30 H 0.195 0.805 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.505 -5.330 -7.060 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.171 4.171 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.504 4.504 8 H 0.107 0.893 9 N -0.118 5.118 10 C 0.299 3.701 11 O -0.513 6.513 12 C -0.160 4.160 13 C 0.006 3.994 14 N -0.208 5.208 15 C -0.017 4.017 16 C 0.069 3.931 17 F -0.108 7.108 18 C -0.102 4.102 19 C -0.129 4.129 20 C 0.090 3.910 21 F -0.107 7.107 22 C -0.135 4.135 23 C -0.043 4.043 24 C -0.035 4.035 25 C -0.172 4.172 26 C -0.227 4.227 27 H 0.090 0.910 28 H 0.212 0.788 29 H 0.213 0.787 30 H 0.212 0.788 31 H 0.170 0.830 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.181 -4.870 -7.331 13.458 hybrid contribution -0.446 0.227 0.799 0.943 sum 9.735 -4.642 -6.532 12.609 Atomic orbital electron populations 1.70062 1.07343 1.29552 1.42026 1.26021 0.95659 1.01861 0.93564 0.85531 0.78783 0.77731 0.79925 1.18940 1.19933 1.18648 1.19388 0.95071 0.84427 1.51479 0.89339 1.42801 1.42119 1.09480 1.17435 1.18422 0.84024 0.84578 0.83111 1.90602 1.50630 1.35183 1.74885 1.20975 1.00817 0.95495 0.98726 1.24600 0.89520 0.98861 0.86383 1.68273 1.09967 1.29211 1.13367 1.19239 0.97397 0.89107 0.95950 1.17365 0.99920 0.83139 0.92633 1.91502 1.93484 1.45174 1.80622 1.21107 0.98861 0.88769 1.01512 1.21062 0.98083 1.00215 0.93542 1.17427 0.99418 0.79148 0.94997 1.91522 1.94055 1.41928 1.83209 1.18623 1.02091 0.94259 0.98509 1.21818 0.90985 0.98408 0.93069 1.21308 0.96590 1.02536 0.83048 1.23057 1.00630 0.93030 1.00490 1.23393 0.98918 1.03512 0.96887 0.91034 0.78781 0.78686 0.78786 0.83006 0.89175 0.88347 0.88957 0.87286 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.65 11.40 21.68 0.25 -41.40 16 2 C 0.04 1.74 2.77 84.96 0.24 1.97 16 3 Si 0.96 36.74 29.33 68.60 2.01 38.75 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.38 -17.87 5.35 84.10 0.45 -17.42 16 8 H 0.09 4.18 6.65 -2.91 -0.02 4.16 16 9 N -0.40 -19.92 2.75 -616.64 -1.69 -21.62 16 10 C 0.51 25.64 7.43 86.71 0.64 26.28 16 11 O -0.62 -34.08 16.53 -4.07 -0.07 -34.14 16 12 C -0.16 -6.89 5.61 -20.00 -0.11 -7.00 16 13 C 0.18 7.72 9.06 85.44 0.77 8.50 16 14 N -0.50 -20.44 10.17 -187.50 -1.91 -22.35 16 15 C 0.11 3.70 6.61 40.31 0.27 3.96 16 16 C 0.09 2.47 7.30 22.43 0.16 2.63 16 17 F -0.13 -3.84 17.11 44.97 0.77 -3.08 16 18 C -0.08 -1.40 9.91 22.07 0.22 -1.19 16 19 C -0.11 -1.81 9.93 22.08 0.22 -1.59 16 20 C 0.11 2.77 7.25 22.46 0.16 2.93 16 21 F -0.13 -3.28 16.67 44.97 0.75 -2.53 16 22 C -0.13 -4.35 5.74 -21.25 -0.12 -4.48 16 23 C -0.02 -0.61 9.29 23.02 0.21 -0.39 16 24 C 0.07 3.24 5.62 44.99 0.25 3.49 16 25 C -0.13 -5.53 8.24 30.59 0.25 -5.28 16 26 C -0.19 -7.22 10.38 30.59 0.32 -6.91 16 27 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 28 H 0.20 9.09 4.92 -2.91 -0.01 9.07 16 29 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.15 5.63 7.67 -2.91 -0.02 5.60 16 32 H 0.09 4.41 7.78 -2.39 -0.02 4.39 16 33 H 0.10 4.33 4.81 -2.39 -0.01 4.32 16 34 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -61.43 316.44 5.21 -56.22 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.16 Total: 24.63 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 3.94 Total: 5.51 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.35 Total: -85.37 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.07 Total: -34.14 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 1.52 Total: -5.61 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.01 Total: 38.75 kcal Total: -61.43 5.21 -56.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293677802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.423 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds