Wall clock time and date at job start Tue Mar 31 2020 11:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46926 * 2 1 4 4 C 1.50700 * 109.46797 * 239.99670 * 2 1 3 5 5 H 1.07996 * 120.00363 * 239.99961 * 4 2 1 6 6 C 1.37877 * 119.99595 * 60.00439 * 4 2 1 7 7 N 1.31514 * 120.00651 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99481 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47391 * 90.00007 * 8 6 4 10 10 H 1.48510 * 109.46699 * 209.99888 * 8 6 4 11 11 H 1.48497 * 109.47279 * 329.99239 * 8 6 4 12 12 C 1.52999 * 109.46825 * 120.00105 * 2 1 3 13 13 S 1.81399 * 109.47214 * 299.99523 * 12 2 1 14 14 O 1.42099 * 110.54116 * 68.38080 * 13 12 2 15 15 O 1.42102 * 110.54369 * 291.62718 * 13 12 2 16 16 N 1.65595 * 104.44949 * 180.02562 * 13 12 2 17 17 C 1.46503 * 120.00082 * 65.00181 * 16 13 12 18 18 C 1.53002 * 109.47495 * 164.99971 * 17 16 13 19 19 C 1.50693 * 109.47298 * 180.02562 * 18 17 16 20 20 N 1.29027 * 124.91534 * 90.30653 * 19 18 17 21 21 C 1.31784 * 117.12400 * 180.22644 * 20 19 18 22 22 C 1.33641 * 114.49781 * 359.48088 * 21 20 19 23 23 S 1.70983 * 124.91700 * 269.99604 * 19 18 17 24 24 H 1.09000 * 109.46825 * 300.00229 * 1 2 3 25 25 H 1.08997 * 109.46900 * 60.00214 * 1 2 3 26 26 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46773 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47156 * 299.99629 * 3 2 1 29 29 H 1.09000 * 109.47556 * 60.00218 * 3 2 1 30 30 H 0.96996 * 120.00437 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46611 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.47406 * 60.00264 * 12 2 1 33 33 H 0.97001 * 120.00366 * 245.00570 * 16 13 12 34 34 H 1.08999 * 109.47402 * 45.00185 * 17 16 13 35 35 H 1.08998 * 109.47073 * 284.99924 * 17 16 13 36 36 H 1.09003 * 109.47062 * 59.99580 * 18 17 16 37 37 H 1.09006 * 109.46638 * 300.00219 * 18 17 16 38 38 H 1.08002 * 122.75368 * 179.75456 * 21 20 19 39 39 H 1.08001 * 126.03830 * 180.26907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7567 -3.7120 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0281 -0.0183 2.8544 15 8 2.0481 1.4100 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 3.5027 -0.7964 4.2054 18 6 3.7925 -1.3323 5.6089 19 6 5.2825 -1.3896 5.8269 20 7 5.9941 -0.4327 6.3195 21 6 7.2889 -0.6471 6.4390 22 6 7.6902 -1.8559 6.0343 23 16 6.2735 -2.7349 5.4644 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1609 -3.4844 31 1 3.1301 -0.7217 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 1.4575 -1.2147 4.5933 34 1 3.9239 0.2038 4.1043 35 1 3.9528 -1.4568 3.4642 36 1 3.3713 -2.3325 5.7100 37 1 3.3423 -0.6718 6.3500 38 1 7.9693 0.0918 6.8359 39 1 8.7038 -2.2282 6.0532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295665596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:18 Heat of formation + Delta-G solvation = -32.854219 kcal Electronic energy + Delta-G solvation = -22577.918933 eV Core-core repulsion = 19160.679270 eV Total energy + Delta-G solvation = -3417.239664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93974 -36.64148 -36.28042 -36.10760 -35.28315 -32.11972 -31.66660 -28.92731 -26.64036 -25.71212 -25.27703 -25.13809 -22.90889 -20.26491 -19.63174 -18.92453 -18.15363 -17.21995 -16.39161 -15.96377 -15.77935 -15.47431 -14.92530 -14.83204 -14.73839 -14.29847 -13.81982 -13.46165 -13.09272 -13.01538 -12.51318 -12.40725 -12.10296 -11.85824 -11.77611 -11.64473 -11.42665 -11.09113 -11.07124 -10.93201 -10.70490 -10.38933 -10.27562 -10.11839 -9.90808 -9.73103 -9.65508 -9.62570 -9.29430 -9.18014 -8.67823 -8.40408 -6.03685 -4.15795 0.39011 0.84753 1.07262 1.45744 2.55591 3.14841 3.25410 3.32794 3.34590 3.87520 4.28215 4.37677 4.60312 4.67916 4.76163 4.88927 4.93896 5.19674 5.21623 5.24883 5.41540 5.65180 5.69127 5.70957 5.86712 5.94508 6.37257 6.70264 6.79877 6.90852 7.00931 7.09405 7.31823 7.46015 7.50602 7.67616 7.98409 8.09514 8.32743 8.82674 9.49675 10.97624 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003470 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.466507 B = 8068.209472 C = 9144.362599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.594 3.406 14 O -0.963 6.963 15 O -0.962 6.962 16 N -1.130 6.130 17 C 0.122 3.878 18 C -0.051 4.051 19 C 0.052 3.948 20 N -0.470 5.470 21 C 0.040 3.960 22 C -0.262 4.262 23 S 0.127 5.873 24 H 0.028 0.972 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.177 0.823 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -7.716 16.670 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.953 6.953 15 O -0.951 6.951 16 N -0.887 5.887 17 C -0.006 4.006 18 C -0.094 4.094 19 C -0.226 4.226 20 N -0.184 5.184 21 C -0.111 4.111 22 C -0.401 4.401 23 S 0.380 5.620 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.245 0.755 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.194 0.806 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.031 -7.208 16.284 19.967 hybrid contribution 1.300 -0.651 -0.517 1.543 sum 10.331 -7.859 15.767 20.423 Atomic orbital electron populations 1.22279 0.96890 1.00639 1.02351 1.17934 0.92850 0.92227 0.89044 1.22274 0.99707 0.97792 1.02382 1.20939 1.31744 1.12069 0.89401 0.92312 1.24939 0.94906 0.94959 0.98924 1.69799 1.36299 1.22558 1.23481 0.86540 0.79169 0.79377 0.82565 1.20649 1.21132 1.19972 1.30527 1.11228 1.12920 1.16888 1.05641 0.74388 0.75231 0.75586 1.93558 1.29374 1.86652 1.85758 1.93549 1.78075 1.38088 1.85436 1.55854 1.13520 1.71396 1.47944 1.21203 0.80945 1.02852 0.95615 1.20453 0.86251 1.03924 0.98732 1.26919 1.01304 0.92888 1.01516 1.66289 1.05785 1.30393 1.15931 1.21855 0.91074 0.96521 1.01677 1.27134 1.03691 0.99119 1.10160 1.84122 0.99387 1.19436 1.59028 0.95353 0.88634 0.94457 0.94494 0.88662 0.95277 0.92736 0.86494 0.86183 0.75480 0.89371 0.91427 0.88709 0.87688 0.80614 0.80500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -4.02 7.77 37.15 0.29 -3.74 16 4 C -0.50 -13.08 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.05 9.35 55.43 0.52 -23.53 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -11.08 5.01 37.16 0.19 -10.89 16 13 S 2.59 46.91 4.49 -107.50 -0.48 46.43 16 14 O -0.96 -19.77 15.70 -57.54 -0.90 -20.67 16 15 O -0.96 -20.13 15.12 -57.54 -0.87 -21.00 16 16 N -1.13 -14.38 5.89 -10.61 -0.06 -14.44 16 17 C 0.12 1.39 6.11 -4.04 -0.02 1.37 16 18 C -0.05 -0.46 5.94 -27.89 -0.17 -0.63 16 19 C 0.05 0.53 6.64 -13.46 -0.09 0.44 16 20 N -0.47 -5.47 10.54 -11.86 -0.13 -5.59 16 21 C 0.04 0.37 11.35 -19.18 -0.22 0.15 16 22 C -0.26 -2.03 11.37 29.12 0.33 -1.70 16 23 S 0.13 1.05 23.18 -107.50 -2.49 -1.45 16 24 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 29 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 32 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 33 H 0.41 4.17 8.62 -34.47 -0.30 3.87 16 34 H 0.09 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -33.10 339.32 -9.42 -42.52 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.24 Total: 5.69 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 0.15 Total: -28.57 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.33 Total: -43.56 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.77 Total: -41.68 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -2.98 Total: 44.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.10 -9.42 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295665596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.666 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds