Wall clock time and date at job start Tue Mar 31 2020 11:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46926 * 2 1 4 4 C 1.50700 * 109.46797 * 239.99670 * 2 1 3 5 5 H 1.07996 * 120.00363 * 239.99961 * 4 2 1 6 6 C 1.37877 * 119.99595 * 60.00439 * 4 2 1 7 7 N 1.31514 * 120.00651 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99481 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47391 * 90.00007 * 8 6 4 10 10 H 1.48510 * 109.46699 * 209.99888 * 8 6 4 11 11 H 1.48497 * 109.47279 * 329.99239 * 8 6 4 12 12 C 1.52999 * 109.46825 * 120.00105 * 2 1 3 13 13 S 1.81399 * 109.47214 * 299.99523 * 12 2 1 14 14 O 1.42099 * 110.54116 * 68.38080 * 13 12 2 15 15 O 1.42102 * 110.54369 * 291.62718 * 13 12 2 16 16 N 1.65595 * 104.44949 * 180.02562 * 13 12 2 17 17 C 1.46503 * 120.00082 * 65.00181 * 16 13 12 18 18 C 1.53002 * 109.47495 * 164.99971 * 17 16 13 19 19 C 1.50693 * 109.47298 * 180.02562 * 18 17 16 20 20 N 1.29027 * 124.91534 * 90.30653 * 19 18 17 21 21 C 1.31784 * 117.12400 * 180.22644 * 20 19 18 22 22 C 1.33641 * 114.49781 * 359.48088 * 21 20 19 23 23 S 1.70983 * 124.91700 * 269.99604 * 19 18 17 24 24 H 1.09000 * 109.46825 * 300.00229 * 1 2 3 25 25 H 1.08997 * 109.46900 * 60.00214 * 1 2 3 26 26 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46773 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47156 * 299.99629 * 3 2 1 29 29 H 1.09000 * 109.47556 * 60.00218 * 3 2 1 30 30 H 0.96996 * 120.00437 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46611 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.47406 * 60.00264 * 12 2 1 33 33 H 0.97001 * 120.00366 * 245.00570 * 16 13 12 34 34 H 1.08999 * 109.47402 * 45.00185 * 17 16 13 35 35 H 1.08998 * 109.47073 * 284.99924 * 17 16 13 36 36 H 1.09003 * 109.47062 * 59.99580 * 18 17 16 37 37 H 1.09006 * 109.46638 * 300.00219 * 18 17 16 38 38 H 1.08002 * 122.75368 * 179.75456 * 21 20 19 39 39 H 1.08001 * 126.03830 * 180.26907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7567 -3.7120 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0281 -0.0183 2.8544 15 8 2.0481 1.4100 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 3.5027 -0.7964 4.2054 18 6 3.7925 -1.3323 5.6089 19 6 5.2825 -1.3896 5.8269 20 7 5.9941 -0.4327 6.3195 21 6 7.2889 -0.6471 6.4390 22 6 7.6902 -1.8559 6.0343 23 16 6.2735 -2.7349 5.4644 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1609 -3.4844 31 1 3.1301 -0.7217 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 1.4575 -1.2147 4.5933 34 1 3.9239 0.2038 4.1043 35 1 3.9528 -1.4568 3.4642 36 1 3.3713 -2.3325 5.7100 37 1 3.3423 -0.6718 6.3500 38 1 7.9693 0.0918 6.8359 39 1 8.7038 -2.2282 6.0532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295665596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:17 Heat of formation + Delta-G solvation = -56.597809 kcal Electronic energy + Delta-G solvation = -22578.948533 eV Core-core repulsion = 19160.679270 eV Total energy + Delta-G solvation = -3418.269263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61862 -38.13715 -38.10462 -37.14507 -36.82953 -33.61952 -32.92743 -29.67359 -28.29475 -27.67312 -27.23690 -25.95762 -23.68695 -21.41540 -20.89287 -20.30541 -19.06942 -18.52025 -17.84502 -17.47577 -16.94608 -16.63904 -16.43516 -16.01214 -15.84882 -15.17615 -15.01212 -14.65707 -14.49466 -14.40216 -14.22299 -13.81437 -13.42935 -13.15167 -13.00046 -12.87933 -12.77222 -12.66935 -12.57646 -12.46859 -12.38735 -12.16288 -12.12377 -11.93311 -11.54762 -11.36072 -10.70226 -10.59789 -10.41875 -10.39905 -10.27048 -9.81832 -8.01531 -6.20170 -0.61929 -0.23478 0.44564 0.81967 1.45204 1.47086 1.55506 1.81984 1.95325 2.45432 2.86605 3.19595 3.21316 3.36631 3.79323 3.99724 4.04681 4.15076 4.21600 4.42492 4.48415 4.57982 4.62017 4.62371 4.86854 4.88013 4.89046 5.00593 5.04202 5.11064 5.24421 5.40708 5.52589 5.66325 5.99222 6.12627 6.15448 6.35649 6.80915 6.84954 7.48249 8.98313 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003470 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.466507 B = 8068.209472 C = 9144.362599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.266 1.266 12 C -0.586 4.586 13 S 2.614 3.386 14 O -0.990 6.990 15 O -0.993 6.993 16 N -1.110 6.110 17 C 0.115 3.885 18 C -0.047 4.047 19 C 0.030 3.970 20 N -0.505 5.505 21 C 0.016 3.984 22 C -0.253 4.253 23 S 0.155 5.845 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.427 0.573 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.192 0.808 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.440 -9.945 17.513 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.191 1.191 12 C -0.718 4.718 13 S 2.711 3.289 14 O -0.980 6.980 15 O -0.983 6.983 16 N -0.872 5.872 17 C -0.013 4.013 18 C -0.089 4.089 19 C -0.248 4.248 20 N -0.220 5.220 21 C -0.134 4.134 22 C -0.392 4.392 23 S 0.408 5.592 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.209 0.791 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.503 -9.449 17.133 22.207 hybrid contribution 0.909 0.018 -0.711 1.154 sum 11.412 -9.431 16.422 22.110 Atomic orbital electron populations 1.22214 0.97721 1.00593 1.01317 1.17928 0.92380 0.92071 0.91004 1.22207 0.99757 0.98519 1.01305 1.21307 1.31594 1.12272 0.90335 0.91682 1.25685 0.95226 0.95631 1.01706 1.69948 1.37271 1.23737 1.23794 0.85618 0.78915 0.78220 0.79227 1.20358 1.21453 1.19066 1.30452 1.12557 1.13611 1.15209 1.04715 0.73487 0.74824 0.75889 1.93514 1.31207 1.87007 1.86251 1.93510 1.78496 1.40326 1.85984 1.55278 1.14614 1.70883 1.46424 1.21388 0.79498 1.02456 0.97963 1.20451 0.86170 1.05434 0.96864 1.27046 1.01813 0.93677 1.02280 1.66289 1.07060 1.31742 1.16924 1.22183 0.90755 0.97777 1.02709 1.27529 1.04889 0.98410 1.08401 1.83974 0.98938 1.18126 1.58170 0.94898 0.91148 0.93919 0.94205 0.91164 0.94899 0.92991 0.84552 0.83937 0.73576 0.91461 0.89490 0.85731 0.87970 0.79103 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 7.78 71.98 0.56 -7.34 16 2 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 3 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 4 C -0.52 -26.45 8.01 25.60 0.21 -26.25 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -50.25 9.35 21.45 0.20 -50.05 16 8 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 9 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 12 C -0.59 -21.25 5.01 71.98 0.36 -20.89 16 13 S 2.61 91.58 4.49 -56.49 -0.25 91.33 16 14 O -0.99 -39.74 15.70 -127.65 -2.00 -41.75 16 15 O -0.99 -41.32 15.12 -127.65 -1.93 -43.25 16 16 N -1.11 -25.92 5.89 -187.48 -1.10 -27.03 16 17 C 0.11 2.39 6.11 86.38 0.53 2.91 16 18 C -0.05 -0.75 5.94 29.85 0.18 -0.58 16 19 C 0.03 0.55 6.64 88.52 0.59 1.14 16 20 N -0.50 -11.26 10.54 -191.45 -2.02 -13.28 16 21 C 0.02 0.27 11.35 83.66 0.95 1.22 16 22 C -0.25 -3.29 11.37 66.78 0.76 -2.54 16 23 S 0.15 2.15 23.18 -56.49 -1.31 0.84 16 24 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 29 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 30 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 31 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 32 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.43 7.54 8.62 -96.74 -0.83 6.70 16 34 H 0.07 1.71 7.69 -2.39 -0.02 1.69 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.67 8.14 -2.38 -0.02 1.66 16 38 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -71.37 339.32 -1.06 -72.43 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.24 Total: 22.16 kcal Atomic # 6 Polarization: -60.26 SS G_CDS: 5.09 Total: -55.16 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -2.92 Total: -90.36 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -3.93 Total: -85.00 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 93.73 SS G_CDS: -1.56 Total: 92.17 kcal Total: -71.37 -1.06 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295665596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.829 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds