Wall clock time and date at job start Tue Mar 31 2020 12:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00139 * 2 1 4 4 C 1.50707 * 109.46866 * 274.54526 * 3 2 1 5 5 H 1.07996 * 119.99988 * 4.88447 * 4 3 2 6 6 C 1.37878 * 119.99631 * 184.88666 * 4 3 2 7 7 N 1.31513 * 120.00636 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99513 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47479 * 59.99704 * 8 6 4 10 10 H 1.48507 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47533 * 299.99485 * 8 6 4 12 12 S 1.65607 * 120.00093 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39968 * 332.96324 * 12 2 1 14 14 O 1.42102 * 106.40235 * 200.04587 * 12 2 1 15 15 N 1.65594 * 107.21879 * 86.50424 * 12 2 1 16 16 C 1.46500 * 120.00133 * 93.77392 * 15 12 2 17 17 C 1.46500 * 119.99781 * 274.05275 * 15 12 2 18 18 C 1.53001 * 109.47064 * 264.23090 * 17 15 12 19 19 C 1.50699 * 109.47253 * 184.58304 * 18 17 15 20 20 C 1.33382 * 125.20681 * 89.99481 * 19 18 17 21 21 C 1.38425 * 114.92403 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92090 * 0.02562 * 21 20 19 23 23 S 1.75887 * 109.59220 * 359.75574 * 22 21 20 24 24 H 1.08990 * 109.47446 * 270.00737 * 1 2 3 25 25 H 1.08998 * 109.46672 * 30.01142 * 1 2 3 26 26 H 1.09002 * 109.46983 * 150.00123 * 1 2 3 27 27 H 1.08996 * 109.47153 * 34.54149 * 3 2 1 28 28 H 1.08998 * 109.47775 * 154.54730 * 3 2 1 29 29 H 0.96993 * 120.00008 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47450 * 270.28087 * 16 15 12 31 31 H 1.09006 * 109.46936 * 30.27375 * 16 15 12 32 32 H 1.09000 * 109.47242 * 150.27281 * 16 15 12 33 33 H 1.08994 * 109.47360 * 24.23652 * 17 15 12 34 34 H 1.09004 * 109.46785 * 144.23219 * 17 15 12 35 35 H 1.09003 * 109.47073 * 304.57939 * 18 17 15 36 36 H 1.08997 * 109.47237 * 64.58382 * 18 17 15 37 37 H 1.08004 * 122.53971 * 359.96213 * 20 19 18 38 38 H 1.08005 * 122.53923 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.20704 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3512 1.7600 -1.4164 5 1 1.8768 1.2271 -2.2272 6 6 3.0974 2.8897 -1.6771 7 7 3.6746 3.5389 -0.6897 8 14 3.2884 3.4982 -3.4328 9 1 1.9509 3.8139 -3.9957 10 1 4.1308 4.7212 -3.4439 11 1 3.9349 2.4438 -4.2547 12 16 2.2931 -1.4342 0.0006 13 8 1.4421 -2.3885 0.6207 14 8 3.6027 -1.1412 0.4678 15 7 2.4546 -1.9076 -1.5779 16 6 3.6616 -1.5536 -2.3290 17 6 1.3879 -2.6753 -2.2252 18 6 1.7123 -4.1683 -2.1435 19 6 0.6741 -4.9504 -2.9060 20 6 0.7472 -5.2680 -4.1994 21 6 -0.3275 -5.9939 -4.6835 22 6 -1.2736 -6.2653 -3.7832 23 16 -0.8161 -5.5899 -2.2250 24 1 -0.3634 0.0001 1.0275 25 1 -0.3632 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6461 2.0066 0.5827 28 1 3.1828 1.1195 0.4416 29 1 4.1992 4.3338 -0.8731 30 1 3.5155 -0.5908 -2.8188 31 1 4.5087 -1.4889 -1.6460 32 1 3.8588 -2.3176 -3.0810 33 1 0.4421 -2.4807 -1.7197 34 1 1.3090 -2.3773 -3.2708 35 1 2.6956 -4.3507 -2.5770 36 1 1.7110 -4.4838 -1.1001 37 1 1.5816 -4.9804 -4.8220 38 1 -0.3948 -6.3160 -5.7122 39 1 -2.1797 -6.8192 -3.9799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330880687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:23 Heat of formation + Delta-G solvation = -41.209002 kcal Electronic energy + Delta-G solvation = -23083.601097 eV Core-core repulsion = 19665.999143 eV Total energy + Delta-G solvation = -3417.601954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.21197 -36.72297 -36.29707 -35.47405 -35.20480 -32.50133 -32.26800 -28.21445 -27.76543 -25.79849 -25.08446 -23.80742 -22.28058 -22.08606 -19.34388 -18.36871 -17.30978 -17.24148 -16.73484 -16.35334 -15.87081 -15.55853 -14.88490 -14.31096 -14.06838 -13.95200 -13.41890 -13.32872 -13.05795 -12.90027 -12.48743 -12.39230 -12.31787 -12.21647 -12.04889 -11.99448 -11.68496 -11.42468 -11.17767 -11.14535 -11.13530 -10.90728 -10.78673 -10.62070 -10.50527 -10.09840 -9.80210 -9.02187 -8.58687 -8.54485 -8.48648 -8.03785 -6.11997 -4.18963 0.87751 1.25593 1.54387 1.92796 2.62732 3.24242 3.30365 3.30750 3.44029 4.09237 4.34831 4.68945 4.86799 4.93334 4.97043 5.19825 5.22359 5.29293 5.37962 5.46752 5.53733 5.63964 5.73710 5.91027 6.03415 6.06158 6.10270 6.17759 6.19945 6.33988 6.38182 6.42130 6.54499 6.87379 7.32016 7.42104 7.64440 7.84690 8.14484 8.85722 9.46918 10.96021 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.004057 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.013868 B = 6900.686688 C = 7609.482691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.997 5.997 3 C 0.244 3.756 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.784 3.216 13 O -0.997 6.997 14 O -0.974 6.974 15 N -1.007 6.007 16 C 0.089 3.911 17 C 0.136 3.864 18 C -0.074 4.074 19 C -0.162 4.162 20 C -0.145 4.145 21 C -0.133 4.133 22 C -0.224 4.224 23 S 0.105 5.895 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -16.149 -6.642 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 S 2.792 3.208 13 O -0.981 6.981 14 O -0.958 6.958 15 N -0.845 5.845 16 C -0.056 4.056 17 C 0.009 3.991 18 C -0.115 4.115 19 C -0.280 4.280 20 C -0.175 4.175 21 C -0.164 4.164 22 C -0.359 4.359 23 S 0.368 5.632 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.427 -16.404 -4.401 18.537 hybrid contribution 0.512 0.645 -2.902 3.016 sum -6.915 -15.759 -7.303 18.695 Atomic orbital electron populations 1.21239 0.80267 1.01927 1.00660 1.57696 1.14115 1.23538 1.88565 1.19224 0.92285 0.78778 0.97533 1.21503 1.32151 1.11126 0.93158 0.92009 1.24959 0.95178 0.96475 0.97232 1.69920 1.32814 1.18686 1.31272 0.86634 0.78126 0.78338 0.84730 1.20264 1.21174 1.20069 1.01873 0.73185 0.72738 0.72958 1.93538 1.69016 1.61346 1.74200 1.93566 1.38505 1.84903 1.78848 1.57902 1.26328 1.67544 1.32705 1.21534 0.86033 1.00974 0.97070 1.21133 0.89598 0.88762 0.99581 1.20705 0.96075 0.94342 1.00407 1.24457 1.00106 1.05689 0.97738 1.20140 1.00697 1.02035 0.94613 1.20149 0.94200 1.01269 1.00744 1.25631 1.04734 1.08880 0.96691 1.84535 1.15736 1.51455 1.11473 0.93637 0.90809 0.93186 0.94713 0.92780 0.92489 0.91433 0.90160 0.91959 0.90486 0.90241 0.89384 0.89749 0.84297 0.84538 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.83 10.31 59.85 0.62 2.44 16 2 N -1.00 -20.87 3.22 -123.06 -0.40 -21.27 16 3 C 0.24 6.09 5.40 -5.19 -0.03 6.06 16 4 C -0.54 -14.02 9.38 -34.44 -0.32 -14.34 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 8 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 S 2.78 56.05 5.99 -107.50 -0.64 55.40 16 13 O -1.00 -20.23 16.44 -57.17 -0.94 -21.17 16 14 O -0.97 -22.78 15.18 -57.17 -0.87 -23.65 16 15 N -1.01 -16.71 3.24 -121.75 -0.39 -17.11 16 16 C 0.09 1.40 10.66 59.85 0.64 2.04 16 17 C 0.14 1.88 5.31 -4.04 -0.02 1.86 16 18 C -0.07 -0.92 6.03 -27.88 -0.17 -1.09 16 19 C -0.16 -1.86 5.76 -36.01 -0.21 -2.07 16 20 C -0.14 -1.49 10.05 -41.21 -0.41 -1.90 16 21 C -0.13 -1.24 10.18 -41.21 -0.42 -1.66 16 22 C -0.22 -2.09 11.23 29.04 0.33 -1.76 16 23 S 0.10 1.15 23.33 -107.50 -2.51 -1.35 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.05 0.75 6.95 -51.93 -0.36 0.39 16 27 H 0.03 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.05 1.49 6.89 -51.93 -0.36 1.13 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 32 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.08 1.07 6.76 -51.93 -0.35 0.72 16 34 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 38 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -31.30 354.12 -10.41 -41.71 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.62 Total: 0.04 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.10 Total: -8.78 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.06 Total: -62.93 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.81 Total: -44.82 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -3.15 Total: 54.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.30 -10.41 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.505 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds