Wall clock time and date at job start Tue Mar 31 2020 12:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00139 * 2 1 4 4 C 1.50707 * 109.46866 * 274.54526 * 3 2 1 5 5 H 1.07996 * 119.99988 * 4.88447 * 4 3 2 6 6 C 1.37878 * 119.99631 * 184.88666 * 4 3 2 7 7 N 1.31513 * 120.00636 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99513 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47479 * 59.99704 * 8 6 4 10 10 H 1.48507 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47533 * 299.99485 * 8 6 4 12 12 S 1.65607 * 120.00093 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39968 * 332.96324 * 12 2 1 14 14 O 1.42102 * 106.40235 * 200.04587 * 12 2 1 15 15 N 1.65594 * 107.21879 * 86.50424 * 12 2 1 16 16 C 1.46500 * 120.00133 * 93.77392 * 15 12 2 17 17 C 1.46500 * 119.99781 * 274.05275 * 15 12 2 18 18 C 1.53001 * 109.47064 * 264.23090 * 17 15 12 19 19 C 1.50699 * 109.47253 * 184.58304 * 18 17 15 20 20 C 1.33382 * 125.20681 * 89.99481 * 19 18 17 21 21 C 1.38425 * 114.92403 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92090 * 0.02562 * 21 20 19 23 23 S 1.75887 * 109.59220 * 359.75574 * 22 21 20 24 24 H 1.08990 * 109.47446 * 270.00737 * 1 2 3 25 25 H 1.08998 * 109.46672 * 30.01142 * 1 2 3 26 26 H 1.09002 * 109.46983 * 150.00123 * 1 2 3 27 27 H 1.08996 * 109.47153 * 34.54149 * 3 2 1 28 28 H 1.08998 * 109.47775 * 154.54730 * 3 2 1 29 29 H 0.96993 * 120.00008 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47450 * 270.28087 * 16 15 12 31 31 H 1.09006 * 109.46936 * 30.27375 * 16 15 12 32 32 H 1.09000 * 109.47242 * 150.27281 * 16 15 12 33 33 H 1.08994 * 109.47360 * 24.23652 * 17 15 12 34 34 H 1.09004 * 109.46785 * 144.23219 * 17 15 12 35 35 H 1.09003 * 109.47073 * 304.57939 * 18 17 15 36 36 H 1.08997 * 109.47237 * 64.58382 * 18 17 15 37 37 H 1.08004 * 122.53971 * 359.96213 * 20 19 18 38 38 H 1.08005 * 122.53923 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.20704 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3512 1.7600 -1.4164 5 1 1.8768 1.2271 -2.2272 6 6 3.0974 2.8897 -1.6771 7 7 3.6746 3.5389 -0.6897 8 14 3.2884 3.4982 -3.4328 9 1 1.9509 3.8139 -3.9957 10 1 4.1308 4.7212 -3.4439 11 1 3.9349 2.4438 -4.2547 12 16 2.2931 -1.4342 0.0006 13 8 1.4421 -2.3885 0.6207 14 8 3.6027 -1.1412 0.4678 15 7 2.4546 -1.9076 -1.5779 16 6 3.6616 -1.5536 -2.3290 17 6 1.3879 -2.6753 -2.2252 18 6 1.7123 -4.1683 -2.1435 19 6 0.6741 -4.9504 -2.9060 20 6 0.7472 -5.2680 -4.1994 21 6 -0.3275 -5.9939 -4.6835 22 6 -1.2736 -6.2653 -3.7832 23 16 -0.8161 -5.5899 -2.2250 24 1 -0.3634 0.0001 1.0275 25 1 -0.3632 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6461 2.0066 0.5827 28 1 3.1828 1.1195 0.4416 29 1 4.1992 4.3338 -0.8731 30 1 3.5155 -0.5908 -2.8188 31 1 4.5087 -1.4889 -1.6460 32 1 3.8588 -2.3176 -3.0810 33 1 0.4421 -2.4807 -1.7197 34 1 1.3090 -2.3773 -3.2708 35 1 2.6956 -4.3507 -2.5770 36 1 1.7110 -4.4838 -1.1001 37 1 1.5816 -4.9804 -4.8220 38 1 -0.3948 -6.3160 -5.7122 39 1 -2.1797 -6.8192 -3.9799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330880687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:23 Heat of formation + Delta-G solvation = -61.309973 kcal Electronic energy + Delta-G solvation = -23084.472741 eV Core-core repulsion = 19665.999143 eV Total energy + Delta-G solvation = -3418.473598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.04831 -38.36652 -37.47662 -37.20619 -36.89833 -34.48175 -33.26068 -29.70355 -29.09396 -26.93602 -26.75913 -24.80835 -24.12890 -23.07743 -20.11488 -19.88544 -18.85594 -18.55258 -18.27051 -17.95243 -17.37762 -16.58349 -16.34498 -15.83063 -15.28156 -15.11996 -14.99496 -14.85863 -14.12349 -14.00961 -13.93239 -13.79854 -13.59179 -13.42053 -13.31044 -13.21898 -13.03253 -12.95666 -12.90804 -12.78246 -12.51167 -12.45274 -12.34721 -11.98710 -11.79357 -11.71487 -11.52027 -10.56918 -10.18536 -9.78631 -9.45012 -9.38037 -8.15605 -6.30314 -0.34493 0.12967 0.76183 1.17697 1.45405 1.46974 1.54851 1.88247 1.95738 2.43646 2.53103 3.16035 3.36007 3.68696 3.88634 4.07464 4.18432 4.26089 4.33503 4.43856 4.60056 4.66137 4.73482 4.75892 4.78726 4.81714 5.02666 5.05589 5.09669 5.12686 5.25780 5.29345 5.42030 5.44677 5.61716 5.66173 5.75650 5.95585 6.10639 6.81557 7.40164 8.92639 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.004057 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.013868 B = 6900.686688 C = 7609.482691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.005 6.005 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.930 5.930 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.261 1.261 12 S 2.793 3.207 13 O -1.001 7.001 14 O -1.013 7.013 15 N -1.001 6.001 16 C 0.087 3.913 17 C 0.131 3.869 18 C -0.068 4.068 19 C -0.182 4.182 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.214 4.214 23 S 0.064 5.936 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -17.532 -9.734 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.847 5.847 3 C 0.134 3.866 4 C -0.581 4.581 5 H 0.091 0.909 6 C -0.189 4.189 7 N -0.570 5.570 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.186 1.186 12 S 2.802 3.198 13 O -0.985 6.985 14 O -0.997 6.997 15 N -0.841 5.841 16 C -0.058 4.058 17 C 0.005 3.995 18 C -0.109 4.109 19 C -0.299 4.299 20 C -0.167 4.167 21 C -0.170 4.170 22 C -0.349 4.349 23 S 0.327 5.673 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.438 -17.813 -7.487 21.085 hybrid contribution 0.753 0.967 -1.954 2.307 sum -7.686 -16.846 -9.442 20.785 Atomic orbital electron populations 1.21478 0.78167 1.03267 1.01903 1.57630 1.15596 1.22253 1.89178 1.18781 0.90829 0.80054 0.96961 1.21770 1.31700 1.11004 0.93587 0.90941 1.25851 0.94854 0.96733 1.01436 1.70066 1.33907 1.19307 1.33687 0.85568 0.78410 0.77834 0.79655 1.19239 1.21437 1.18559 1.01423 0.72203 0.72412 0.73808 1.93526 1.68887 1.61055 1.75029 1.93513 1.40540 1.85398 1.80242 1.57631 1.27427 1.67449 1.31611 1.21627 0.84946 1.01859 0.97334 1.21396 0.88378 0.89389 1.00323 1.20570 0.97320 0.93292 0.99704 1.24353 1.00128 1.07176 0.98285 1.20447 1.01244 1.00869 0.94143 1.20469 0.93683 1.00902 1.01964 1.25940 1.05527 1.08226 0.95221 1.84683 1.16536 1.52556 1.13560 0.92554 0.90593 0.90684 0.96418 0.96260 0.92538 0.92868 0.91883 0.87512 0.90876 0.88035 0.87863 0.91672 0.82541 0.81985 0.79872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.29 10.31 127.77 1.32 4.61 16 2 N -1.01 -42.43 3.22 -543.25 -1.75 -44.19 16 3 C 0.26 13.23 5.40 85.64 0.46 13.70 16 4 C -0.54 -28.17 9.38 25.60 0.24 -27.93 16 5 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 6 C 0.01 0.58 5.46 84.66 0.46 1.04 16 7 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 8 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 S 2.79 113.24 5.99 -56.49 -0.34 112.90 16 13 O -1.00 -40.55 16.44 -128.00 -2.10 -42.65 16 14 O -1.01 -48.93 15.18 -128.00 -1.94 -50.88 16 15 N -1.00 -32.06 3.24 -539.11 -1.75 -33.81 16 16 C 0.09 2.61 10.66 127.77 1.36 3.98 16 17 C 0.13 3.33 5.31 86.38 0.46 3.79 16 18 C -0.07 -1.56 6.03 29.85 0.18 -1.38 16 19 C -0.18 -3.80 5.76 24.59 0.14 -3.66 16 20 C -0.14 -2.36 10.05 21.21 0.21 -2.14 16 21 C -0.14 -2.12 10.18 21.22 0.22 -1.91 16 22 C -0.21 -3.40 11.23 66.72 0.75 -2.65 16 23 S 0.06 1.32 23.33 -56.49 -1.32 0.01 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 26 H 0.07 2.14 6.95 -2.39 -0.02 2.12 16 27 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 28 H 0.02 1.12 6.89 -2.39 -0.02 1.11 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.11 7.01 -2.38 -0.02 2.09 16 32 H 0.11 2.22 8.06 -2.39 -0.02 2.20 16 33 H 0.07 1.92 6.76 -2.39 -0.02 1.90 16 34 H 0.10 2.16 8.11 -2.39 -0.02 2.14 16 35 H 0.10 2.00 8.13 -2.39 -0.02 1.98 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.34 354.12 -0.05 -68.39 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.04 Total: 13.22 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.80 Total: -12.56 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -3.21 Total: -131.74 kcal Atomic # 8 Polarization: -89.48 SS G_CDS: -4.05 Total: -93.53 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 114.56 SS G_CDS: -1.66 Total: 112.90 kcal Total: -68.34 -0.05 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.083 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds