Wall clock time and date at job start Tue Mar 31 2020 11:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 H 1.08996 * 109.46982 * 305.25839 * 3 2 1 5 5 C 1.50698 * 109.47056 * 185.25464 * 3 2 1 6 6 H 1.08000 * 120.00236 * 240.00480 * 5 3 2 7 7 C 1.37879 * 119.99976 * 60.00360 * 5 3 2 8 8 N 1.31519 * 120.00113 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00265 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47235 * 59.99847 * 9 7 5 11 11 H 1.48496 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46954 * 299.99957 * 9 7 5 13 13 N 1.46501 * 109.46788 * 65.25638 * 3 2 1 14 14 S 1.65603 * 119.99888 * 215.52966 * 13 3 2 15 15 O 1.42094 * 104.27731 * 307.33450 * 14 13 3 16 16 O 1.42102 * 104.27667 * 179.47232 * 14 13 3 17 17 C 1.81401 * 104.44505 * 63.40675 * 14 13 3 18 18 C 1.53001 * 109.46835 * 175.04480 * 17 14 13 19 19 C 1.50707 * 109.46933 * 179.97438 * 18 17 14 20 20 S 1.76191 * 126.03916 * 269.97610 * 19 18 17 21 21 C 1.70983 * 90.28344 * 180.02562 * 20 19 18 22 22 N 1.29023 * 110.16388 * 0.02562 * 21 20 19 23 23 C 1.31788 * 117.12585 * 359.97438 * 22 21 20 24 24 C 1.50706 * 122.74683 * 179.72885 * 23 22 21 25 25 H 1.09003 * 109.47308 * 304.37939 * 1 2 3 26 26 H 1.09002 * 109.47616 * 64.38177 * 1 2 3 27 27 H 1.09007 * 109.47001 * 184.38216 * 1 2 3 28 28 H 1.08999 * 109.47288 * 240.00136 * 2 1 3 29 29 H 1.08998 * 109.47681 * 120.00290 * 2 1 3 30 30 H 0.96995 * 120.00104 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99923 * 35.53707 * 13 3 2 32 32 H 1.08996 * 109.47379 * 55.04392 * 17 14 13 33 33 H 1.09003 * 109.46981 * 295.04145 * 17 14 13 34 34 H 1.09004 * 109.47020 * 60.00038 * 18 17 14 35 35 H 1.08995 * 109.47174 * 299.99938 * 18 17 14 36 36 H 1.07991 * 124.91803 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.46795 * 90.02386 * 24 23 22 38 38 H 1.08995 * 109.46964 * 210.02449 * 24 23 22 39 39 H 1.08997 * 109.46971 * 330.02805 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6017 1.9828 -0.8391 5 6 3.5413 1.4446 -0.1301 6 1 4.1499 1.8879 0.6441 7 6 4.1380 0.8804 -1.2377 8 7 3.3970 0.3400 -2.1803 9 14 5.9990 0.8835 -1.3994 10 1 6.5964 0.1478 -0.2561 11 1 6.3865 0.2220 -2.6711 12 1 6.4934 2.2837 -1.3997 13 7 1.6576 2.0956 1.2544 14 16 1.2482 3.7002 1.2613 15 8 2.3406 4.3434 0.6194 16 8 0.9310 3.9751 2.6189 17 6 -0.2405 3.7918 0.2288 18 6 -0.7931 5.2182 0.2561 19 6 -2.0295 5.2945 -0.6022 20 16 -2.0763 5.6805 -2.3207 21 6 -3.7783 5.5175 -2.3196 22 7 -4.1949 5.2097 -1.1379 23 6 -3.2842 5.0822 -0.1940 24 6 -3.6299 4.7323 1.2305 25 1 -0.3634 0.5803 0.8482 26 1 -0.3634 0.4443 -0.9266 27 1 -0.3633 -1.0247 0.0785 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8168 -0.0566 -2.9596 31 1 1.6444 1.5881 2.0810 32 1 -0.9927 3.1033 0.6138 33 1 0.0109 3.5191 -0.7962 34 1 -0.0409 5.9067 -0.1290 35 1 -1.0445 5.4909 1.2810 36 1 -4.4128 5.6534 -3.1829 37 1 -3.6214 3.6490 1.3508 38 1 -2.8967 5.1783 1.9024 39 1 -4.6218 5.1164 1.4685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331341025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:57 Heat of formation + Delta-G solvation = -43.426986 kcal Electronic energy + Delta-G solvation = -22899.332129 eV Core-core repulsion = 19481.633996 eV Total energy + Delta-G solvation = -3417.698133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04832 -36.57574 -35.99232 -35.35107 -34.80936 -32.19411 -31.13340 -30.65850 -27.66332 -26.65205 -25.07857 -23.31068 -23.06484 -20.24974 -19.06373 -18.71024 -18.31072 -17.07077 -16.72424 -16.04982 -15.74813 -15.44108 -14.89528 -14.83835 -14.20649 -13.73768 -13.59207 -13.30557 -13.10262 -13.00442 -12.80862 -12.74681 -12.47530 -11.97701 -11.76475 -11.64650 -11.53845 -11.37905 -11.23238 -11.06987 -10.94952 -10.78805 -10.55161 -10.22323 -9.88070 -9.85023 -9.79583 -9.70613 -9.35442 -8.85436 -8.44488 -8.24502 -6.08775 -4.14757 0.51855 0.82349 1.22644 1.61615 2.62512 3.32658 3.35856 3.39356 3.45916 4.06293 4.22788 4.41414 4.54676 4.59623 4.79429 4.88736 4.97380 5.16136 5.21130 5.33682 5.47911 5.51061 5.65606 5.78445 5.85741 6.01989 6.07617 6.13321 6.23191 6.41756 6.71177 6.85596 7.03471 7.52476 7.55681 7.60909 7.86664 8.07076 8.22189 8.89107 9.51532 10.95656 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.004078 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.584409 B = 6863.745221 C = 7230.380669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.279 3.721 4 H 0.039 0.961 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 N -1.102 6.102 14 S 2.611 3.389 15 O -0.941 6.941 16 O -0.982 6.982 17 C -0.637 4.637 18 C -0.030 4.030 19 C -0.207 4.207 20 S 0.131 5.869 21 C 0.013 3.987 22 N -0.468 5.468 23 C 0.060 3.940 24 C -0.083 4.083 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.406 0.594 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.199 0.801 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 7.423 1.343 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.056 0.944 5 C -0.557 4.557 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.862 5.862 14 S 2.700 3.300 15 O -0.930 6.930 16 O -0.972 6.972 17 C -0.764 4.764 18 C -0.071 4.071 19 C -0.329 4.329 20 S 0.386 5.614 21 C -0.285 4.285 22 N -0.182 5.182 23 C -0.072 4.072 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.215 0.785 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.709 8.309 0.677 15.200 hybrid contribution 0.119 -0.925 0.256 0.967 sum -12.591 7.384 0.934 14.626 Atomic orbital electron populations 1.21874 0.99135 0.99715 1.00067 1.21898 0.91831 0.99554 1.03494 1.18546 0.95040 0.90182 0.78712 0.94384 1.21497 0.91293 1.37214 1.05744 0.91732 1.24899 0.98548 0.94962 0.95483 1.69819 1.35157 1.38857 1.09595 0.86564 0.85259 0.78502 0.77199 1.20235 1.21306 1.19986 1.55551 1.83011 1.29755 1.17909 1.04862 0.76225 0.74395 0.74486 1.93636 1.47054 1.74680 1.77677 1.93529 1.86203 1.84596 1.32856 1.30867 1.23036 1.03513 1.19029 1.19703 0.93355 0.94390 0.99691 1.25488 0.99085 1.11225 0.97121 1.84217 1.07156 1.63942 1.06129 1.28272 0.96970 1.04136 0.99102 1.66191 1.37165 1.15053 0.99746 1.20237 0.87297 1.02282 0.97418 1.20430 1.02902 1.02458 0.88437 0.94336 0.93739 0.94369 0.87530 0.93934 0.92666 0.76110 0.84985 0.84552 0.89108 0.88206 0.78457 0.90375 0.90306 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.85 37.16 0.37 -2.20 16 2 C -0.13 -2.68 5.38 -26.73 -0.14 -2.82 16 3 C 0.28 6.26 2.07 -69.08 -0.14 6.12 16 4 H 0.04 0.89 7.14 -51.93 -0.37 0.52 16 5 C -0.52 -13.63 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.90 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -1.10 -20.74 4.73 -5.88 -0.03 -20.77 16 14 S 2.61 45.77 5.38 -107.50 -0.58 45.20 16 15 O -0.94 -20.55 17.85 -57.54 -1.03 -21.58 16 16 O -0.98 -18.10 18.08 -57.54 -1.04 -19.14 16 17 C -0.64 -8.76 5.85 37.16 0.22 -8.54 16 18 C -0.03 -0.37 5.44 -27.88 -0.15 -0.53 16 19 C -0.21 -2.55 5.84 -35.92 -0.21 -2.76 16 20 S 0.13 1.44 23.22 -107.50 -2.50 -1.06 16 21 C 0.01 0.13 12.23 51.58 0.63 0.77 16 22 N -0.47 -5.94 10.53 -11.90 -0.13 -6.06 16 23 C 0.06 0.74 6.74 -84.22 -0.57 0.17 16 24 C -0.08 -0.84 10.06 36.01 0.36 -0.47 16 25 H 0.04 0.58 7.64 -51.93 -0.40 0.18 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.41 6.86 8.80 -34.48 -0.30 6.56 16 32 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.14 1.94 7.51 -51.92 -0.39 1.55 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.05 6.75 -51.93 -0.35 0.70 16 36 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.70 6.71 -51.93 -0.35 0.35 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -32.47 351.22 -9.83 -42.30 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.40 Total: 5.72 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -0.04 Total: -22.64 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.47 Total: -50.15 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -2.07 Total: -40.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -3.07 Total: 44.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.47 -9.83 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331341025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.125 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds