Wall clock time and date at job start Tue Mar 31 2020 11:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 H 1.08996 * 109.46982 * 305.25839 * 3 2 1 5 5 C 1.50698 * 109.47056 * 185.25464 * 3 2 1 6 6 H 1.08000 * 120.00236 * 240.00480 * 5 3 2 7 7 C 1.37879 * 119.99976 * 60.00360 * 5 3 2 8 8 N 1.31519 * 120.00113 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00265 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47235 * 59.99847 * 9 7 5 11 11 H 1.48496 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46954 * 299.99957 * 9 7 5 13 13 N 1.46501 * 109.46788 * 65.25638 * 3 2 1 14 14 S 1.65603 * 119.99888 * 215.52966 * 13 3 2 15 15 O 1.42094 * 104.27731 * 307.33450 * 14 13 3 16 16 O 1.42102 * 104.27667 * 179.47232 * 14 13 3 17 17 C 1.81401 * 104.44505 * 63.40675 * 14 13 3 18 18 C 1.53001 * 109.46835 * 175.04480 * 17 14 13 19 19 C 1.50707 * 109.46933 * 179.97438 * 18 17 14 20 20 S 1.76191 * 126.03916 * 269.97610 * 19 18 17 21 21 C 1.70983 * 90.28344 * 180.02562 * 20 19 18 22 22 N 1.29023 * 110.16388 * 0.02562 * 21 20 19 23 23 C 1.31788 * 117.12585 * 359.97438 * 22 21 20 24 24 C 1.50706 * 122.74683 * 179.72885 * 23 22 21 25 25 H 1.09003 * 109.47308 * 304.37939 * 1 2 3 26 26 H 1.09002 * 109.47616 * 64.38177 * 1 2 3 27 27 H 1.09007 * 109.47001 * 184.38216 * 1 2 3 28 28 H 1.08999 * 109.47288 * 240.00136 * 2 1 3 29 29 H 1.08998 * 109.47681 * 120.00290 * 2 1 3 30 30 H 0.96995 * 120.00104 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99923 * 35.53707 * 13 3 2 32 32 H 1.08996 * 109.47379 * 55.04392 * 17 14 13 33 33 H 1.09003 * 109.46981 * 295.04145 * 17 14 13 34 34 H 1.09004 * 109.47020 * 60.00038 * 18 17 14 35 35 H 1.08995 * 109.47174 * 299.99938 * 18 17 14 36 36 H 1.07991 * 124.91803 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.46795 * 90.02386 * 24 23 22 38 38 H 1.08995 * 109.46964 * 210.02449 * 24 23 22 39 39 H 1.08997 * 109.46971 * 330.02805 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6017 1.9828 -0.8391 5 6 3.5413 1.4446 -0.1301 6 1 4.1499 1.8879 0.6441 7 6 4.1380 0.8804 -1.2377 8 7 3.3970 0.3400 -2.1803 9 14 5.9990 0.8835 -1.3994 10 1 6.5964 0.1478 -0.2561 11 1 6.3865 0.2220 -2.6711 12 1 6.4934 2.2837 -1.3997 13 7 1.6576 2.0956 1.2544 14 16 1.2482 3.7002 1.2613 15 8 2.3406 4.3434 0.6194 16 8 0.9310 3.9751 2.6189 17 6 -0.2405 3.7918 0.2288 18 6 -0.7931 5.2182 0.2561 19 6 -2.0295 5.2945 -0.6022 20 16 -2.0763 5.6805 -2.3207 21 6 -3.7783 5.5175 -2.3196 22 7 -4.1949 5.2097 -1.1379 23 6 -3.2842 5.0822 -0.1940 24 6 -3.6299 4.7323 1.2305 25 1 -0.3634 0.5803 0.8482 26 1 -0.3634 0.4443 -0.9266 27 1 -0.3633 -1.0247 0.0785 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8168 -0.0566 -2.9596 31 1 1.6444 1.5881 2.0810 32 1 -0.9927 3.1033 0.6138 33 1 0.0109 3.5191 -0.7962 34 1 -0.0409 5.9067 -0.1290 35 1 -1.0445 5.4909 1.2810 36 1 -4.4128 5.6534 -3.1829 37 1 -3.6214 3.6490 1.3508 38 1 -2.8967 5.1783 1.9024 39 1 -4.6218 5.1164 1.4685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331341025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:56 Heat of formation + Delta-G solvation = -66.636230 kcal Electronic energy + Delta-G solvation = -22900.338558 eV Core-core repulsion = 19481.633996 eV Total energy + Delta-G solvation = -3418.704562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90661 -38.11652 -37.64069 -36.88119 -35.79884 -34.12158 -32.19510 -31.98556 -28.61538 -28.45850 -25.92401 -24.84620 -24.26983 -21.89962 -20.19978 -19.91265 -19.18661 -18.65159 -18.39272 -17.37671 -17.21292 -16.61229 -16.44656 -15.81985 -15.63047 -15.06738 -14.86362 -14.63342 -14.46548 -14.11539 -13.84013 -13.58287 -13.50687 -13.36766 -13.27442 -13.09993 -13.01127 -12.94443 -12.67470 -12.62635 -12.56695 -12.07695 -11.96496 -11.90255 -11.58071 -11.50798 -11.35956 -10.64873 -10.42747 -10.27710 -9.94146 -9.69579 -8.08790 -6.20261 -0.63488 -0.26557 0.39273 0.77943 1.42840 1.44958 1.51894 1.75791 1.99035 2.46882 2.87934 3.17453 3.30558 3.36649 3.57893 3.78342 3.79882 4.15753 4.26543 4.42049 4.48520 4.54167 4.63563 4.71530 4.73449 4.79335 4.88561 4.89892 4.98265 5.16804 5.35703 5.39211 5.41711 5.70697 5.83521 6.04919 6.32290 6.49949 6.71218 6.86188 7.47877 8.92765 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.004078 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.584409 B = 6863.745221 C = 7230.380669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.284 3.716 4 H 0.028 0.972 5 C -0.540 4.540 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.282 1.282 13 N -1.104 6.104 14 S 2.617 3.383 15 O -0.992 6.992 16 O -0.991 6.991 17 C -0.611 4.611 18 C -0.036 4.036 19 C -0.228 4.228 20 S 0.130 5.870 21 C 0.026 3.974 22 N -0.496 5.496 23 C 0.056 3.944 24 C -0.088 4.088 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.231 0.769 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 7.459 1.383 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.179 3.821 4 H 0.046 0.954 5 C -0.580 4.580 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.863 5.863 14 S 2.712 3.288 15 O -0.982 6.982 16 O -0.981 6.981 17 C -0.742 4.742 18 C -0.077 4.077 19 C -0.350 4.350 20 S 0.384 5.616 21 C -0.271 4.271 22 N -0.210 5.210 23 C -0.076 4.076 24 C -0.147 4.147 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.248 0.752 32 H 0.176 0.824 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.442 8.329 0.760 16.689 hybrid contribution 0.577 -0.867 0.217 1.064 sum -13.866 7.462 0.977 15.776 Atomic orbital electron populations 1.21789 0.95883 1.01333 1.01082 1.21721 0.94747 0.97876 1.01981 1.18282 0.92849 0.91284 0.79702 0.95424 1.21832 0.93665 1.37038 1.05415 0.93569 1.25473 1.01663 0.95022 0.95524 1.69907 1.36075 1.39169 1.09731 0.85865 0.81768 0.77966 0.77588 1.19696 1.20354 1.20818 1.55346 1.83819 1.29927 1.17234 1.04456 0.76709 0.73299 0.74368 1.93575 1.50746 1.75494 1.78417 1.93511 1.86498 1.84378 1.33735 1.30570 1.20489 1.05746 1.17426 1.19806 0.93688 0.93094 1.01131 1.25440 0.98907 1.12956 0.97688 1.84249 1.07834 1.63877 1.05624 1.28886 0.96983 1.01826 0.99454 1.66269 1.37602 1.16555 1.00545 1.20600 0.87275 1.01484 0.98287 1.20558 1.03614 1.03025 0.87499 0.92035 0.93770 0.92700 0.90559 0.93932 0.92658 0.75207 0.82360 0.84751 0.88872 0.86403 0.75238 0.89684 0.89224 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.85 71.98 0.71 -3.86 16 2 C -0.12 -5.09 5.38 30.59 0.16 -4.92 16 3 C 0.28 12.75 2.07 44.25 0.09 12.84 16 4 H 0.03 1.31 7.14 -2.39 -0.02 1.29 16 5 C -0.54 -28.90 8.84 25.60 0.23 -28.68 16 6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -49.03 11.29 21.45 0.24 -48.79 16 9 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -1.10 -41.02 4.73 -172.52 -0.82 -41.84 16 14 S 2.62 90.30 5.38 -56.49 -0.30 90.00 16 15 O -0.99 -44.16 17.85 -127.65 -2.28 -46.44 16 16 O -0.99 -35.45 18.08 -127.65 -2.31 -37.75 16 17 C -0.61 -15.64 5.85 71.98 0.42 -15.22 16 18 C -0.04 -0.82 5.44 29.85 0.16 -0.66 16 19 C -0.23 -5.15 5.84 24.64 0.14 -5.01 16 20 S 0.13 2.62 23.22 -56.49 -1.31 1.30 16 21 C 0.03 0.47 12.23 130.66 1.60 2.07 16 22 N -0.50 -11.44 10.53 -191.55 -2.02 -13.45 16 23 C 0.06 1.25 6.74 41.52 0.28 1.53 16 24 C -0.09 -1.55 10.06 71.24 0.72 -0.83 16 25 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.08 3.65 5.95 -2.39 -0.01 3.63 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.41 13.69 8.80 -96.74 -0.85 12.84 16 32 H 0.16 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.13 3.64 7.51 -2.39 -0.02 3.62 16 34 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.12 2.21 6.75 -2.39 -0.02 2.19 16 36 H 0.23 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.35 6.71 -2.39 -0.02 1.33 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.80 351.22 -1.59 -71.39 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.22 Total: 21.10 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.96 Total: -41.05 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -2.59 Total: -104.08 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -4.59 Total: -84.19 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 92.92 SS G_CDS: -1.62 Total: 91.30 kcal Total: -69.80 -1.59 -71.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331341025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.753 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds