Wall clock time and date at job start Tue Mar 31 2020 12:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46793 * 2 1 4 4 C 1.50697 * 109.46993 * 240.00397 * 2 1 3 5 5 H 1.07999 * 119.99792 * 270.46194 * 4 2 1 6 6 C 1.37877 * 120.00102 * 90.46894 * 4 2 1 7 7 N 1.31517 * 119.99532 * 176.41950 * 6 4 2 8 8 Si 1.86792 * 120.00070 * 356.41713 * 6 4 2 9 9 H 1.48498 * 109.47238 * 84.57507 * 8 6 4 10 10 H 1.48503 * 109.47456 * 204.57074 * 8 6 4 11 11 H 1.48501 * 109.47267 * 324.57236 * 8 6 4 12 12 N 1.46499 * 109.47330 * 119.99884 * 2 1 3 13 13 C 1.46496 * 119.99607 * 60.00303 * 12 2 1 14 14 C 1.34775 * 120.00011 * 240.00162 * 12 2 1 15 15 O 1.21507 * 120.00199 * 1.57275 * 14 12 2 16 16 C 1.48220 * 119.99759 * 181.57063 * 14 12 2 17 17 N 1.31922 * 119.25331 * 354.45982 * 16 14 12 18 18 C 1.33226 * 121.31644 * 179.97438 * 17 16 14 19 19 C 1.40846 * 120.96678 * 180.02562 * 18 17 16 20 20 C 1.35981 * 119.73944 * 179.97438 * 19 18 17 21 21 C 1.39446 * 121.09073 * 359.97438 * 20 19 18 22 22 C 1.36111 * 120.92308 * 0.02562 * 21 20 19 23 23 C 1.40447 * 119.65305 * 359.95228 * 22 21 20 24 24 C 1.40667 * 121.27435 * 180.02562 * 23 22 21 25 25 C 1.36683 * 118.24032 * 180.02562 * 24 23 22 26 26 Cl 1.73602 * 120.10602 * 179.97438 * 25 24 23 27 27 H 1.08996 * 109.46852 * 294.42926 * 1 2 3 28 28 H 1.09002 * 109.47190 * 54.42809 * 1 2 3 29 29 H 1.08998 * 109.46621 * 174.43212 * 1 2 3 30 30 H 0.97004 * 119.99768 * 180.02562 * 7 6 4 31 31 H 1.09011 * 109.47418 * 263.56269 * 13 12 2 32 32 H 1.09001 * 109.47639 * 23.56378 * 13 12 2 33 33 H 1.09006 * 109.47249 * 143.56740 * 13 12 2 34 34 H 1.08004 * 120.12970 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.45246 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.53478 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.17239 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.87999 * 0.04830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.2052 -1.7761 -1.2060 6 6 2.2713 0.0004 -2.3875 7 7 2.7761 -0.6064 -3.4395 8 14 1.8781 1.8250 -2.4609 9 1 3.0180 2.5997 -1.9079 10 1 1.6461 2.2251 -3.8721 11 1 0.6577 2.1010 -1.6611 12 7 2.0184 -0.6906 1.1962 13 6 1.6646 -2.0931 1.4279 14 6 2.7933 -0.0355 2.0833 15 8 3.0632 1.1358 1.9057 16 6 3.3161 -0.7440 3.2756 17 7 2.9257 -1.9817 3.5128 18 6 3.3699 -2.6570 4.5718 19 6 2.9487 -3.9783 4.8176 20 6 3.4184 -4.6446 5.9060 21 6 4.3145 -4.0417 6.7880 22 6 4.7451 -2.7666 6.5847 23 6 4.2827 -2.0462 5.4713 24 6 4.7057 -0.7268 5.2282 25 6 4.2160 -0.0834 4.1262 26 17 4.7051 1.5460 3.7802 27 1 -0.3633 0.4250 0.9356 28 1 -0.3634 0.5978 -0.8359 29 1 -0.3632 -1.0228 -0.0997 30 1 2.9446 -0.1063 -4.2534 31 1 0.8033 -2.1453 2.0941 32 1 1.4183 -2.5676 0.4780 33 1 2.5087 -2.6102 1.8842 34 1 2.2559 -4.4607 4.1439 35 1 3.0926 -5.6577 6.0898 36 1 4.6713 -4.5940 7.6448 37 1 5.4391 -2.3113 7.2759 38 1 5.3994 -0.2354 5.8944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334909397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:29 Heat of formation + Delta-G solvation = 46.150993 kcal Electronic energy + Delta-G solvation = -24067.878840 eV Core-core repulsion = 20516.577441 eV Total energy + Delta-G solvation = -3551.301398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18986 -39.11605 -37.18266 -36.31543 -35.41648 -33.74807 -32.57807 -31.05689 -30.25084 -29.75463 -26.21052 -25.35388 -25.02566 -23.85388 -22.39159 -21.54721 -19.08095 -18.24432 -17.81391 -17.17737 -16.60132 -15.72777 -15.36802 -15.20701 -15.02039 -14.61484 -14.23335 -13.98366 -13.81546 -13.52855 -13.02206 -12.64816 -12.47256 -12.32397 -12.18144 -12.03687 -11.92390 -11.74955 -11.45812 -11.37939 -11.16312 -10.94892 -10.60156 -10.41455 -10.26211 -9.80220 -9.66705 -9.17230 -8.85365 -8.73869 -8.60435 -8.46594 -7.60528 -6.13520 -4.15274 0.00388 0.39033 1.68459 2.12513 2.36460 3.32554 3.40048 3.44504 3.46245 3.56297 3.99309 4.08243 4.29294 4.40939 4.48454 4.60823 4.64964 4.84361 4.92012 5.11503 5.26484 5.43927 5.48511 5.57605 5.71587 6.01096 6.08936 6.13666 6.17668 6.27818 6.32480 6.45650 6.48537 6.60507 6.78364 6.95677 7.10638 7.44214 7.56153 7.65244 8.13823 8.50134 8.83693 8.90407 9.48471 10.98471 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.004306 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.026829 B = 6501.371829 C = 7540.756433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.225 3.775 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.870 3.130 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.558 5.558 13 C 0.080 3.920 14 C 0.544 3.456 15 O -0.528 6.528 16 C 0.138 3.862 17 N -0.416 5.416 18 C 0.115 3.885 19 C -0.081 4.081 20 C -0.105 4.105 21 C -0.109 4.109 22 C -0.099 4.099 23 C -0.083 4.083 24 C -0.063 4.063 25 C -0.047 4.047 26 Cl -0.015 7.015 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.266 0.734 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -6.355 21.887 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.287 5.287 13 C -0.063 4.063 14 C 0.328 3.672 15 O -0.405 6.405 16 C -0.016 4.016 17 N -0.128 5.128 18 C -0.007 4.007 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.086 4.086 24 C -0.089 4.089 25 C -0.077 4.077 26 Cl 0.015 6.985 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.103 -6.039 20.970 21.924 hybrid contribution 0.517 1.276 0.355 1.422 sum 2.620 -4.763 21.326 22.008 Atomic orbital electron populations 1.22306 0.98194 1.01131 0.99291 1.19302 0.90815 0.94814 0.82646 0.91921 1.21114 1.45083 0.96736 0.93416 0.90253 1.24908 0.93634 0.98256 0.95557 1.69893 1.42808 1.36854 1.03334 0.86996 0.80255 0.85930 0.77136 1.19588 1.21351 1.18399 1.48156 1.46464 1.12433 1.21647 1.22194 1.01044 0.82110 1.01001 1.17795 0.80769 0.86435 0.82161 1.90825 1.59063 1.15069 1.75498 1.21728 0.93969 0.90101 0.95832 1.68814 1.22473 1.05784 1.15760 1.19196 0.95094 0.95323 0.91128 1.20910 0.99509 0.91759 0.97763 1.20943 0.96937 1.00358 0.94265 1.20977 0.97201 0.95077 0.99478 1.20959 0.99839 0.94792 0.96164 1.18858 0.98408 0.94237 0.97062 1.21368 0.98584 0.93233 0.95732 1.21585 0.99104 0.90303 0.96702 1.98430 1.89407 1.16199 1.94483 0.95453 0.92312 0.92993 0.92418 0.93857 0.91096 0.89007 0.84079 0.85019 0.85341 0.84999 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.92 37.16 0.33 -2.93 16 2 C 0.22 5.54 2.21 -69.08 -0.15 5.38 16 3 H 0.06 1.67 4.68 -51.93 -0.24 1.43 16 4 C -0.53 -14.65 8.68 -34.44 -0.30 -14.95 16 5 H 0.08 2.35 6.94 -52.49 -0.36 1.99 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -27.05 13.96 55.43 0.77 -26.27 16 8 Si 0.87 22.01 26.34 -169.99 -4.48 17.54 16 9 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.21 5.83 56.52 0.33 -5.88 16 12 N -0.56 -12.34 2.75 -176.23 -0.49 -12.82 16 13 C 0.08 1.48 8.38 59.84 0.50 1.98 16 14 C 0.54 11.84 7.65 -12.16 -0.09 11.74 16 15 O -0.53 -12.65 13.21 5.36 0.07 -12.58 16 16 C 0.14 2.48 6.65 -82.93 -0.55 1.93 16 17 N -0.42 -6.65 5.92 -7.52 -0.04 -6.70 16 18 C 0.12 1.53 6.61 -84.85 -0.56 0.96 16 19 C -0.08 -0.83 9.99 -39.41 -0.39 -1.23 16 20 C -0.11 -0.82 9.94 -39.94 -0.40 -1.22 16 21 C -0.11 -0.79 9.95 -39.90 -0.40 -1.19 16 22 C -0.10 -0.83 9.77 -39.51 -0.39 -1.22 16 23 C -0.08 -0.97 5.75 -106.72 -0.61 -1.58 16 24 C -0.06 -0.75 9.66 -39.23 -0.38 -1.13 16 25 C -0.05 -0.73 6.32 -39.35 -0.25 -0.98 16 26 Cl -0.01 -0.24 25.93 -51.86 -1.34 -1.58 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.28 6.32 -51.93 -0.33 0.95 16 29 H 0.05 1.05 7.86 -51.93 -0.41 0.65 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 32 H 0.07 1.38 6.68 -51.93 -0.35 1.03 16 33 H 0.09 1.62 5.25 -52.53 -0.28 1.34 16 34 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -32.92 326.72 -8.45 -41.38 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.13 Total: -1.68 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.74 Total: -2.20 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.24 Total: -45.79 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.48 Total: 17.54 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.34 Total: -1.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.92 -8.45 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334909397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.528 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds