Wall clock time and date at job start Tue Mar 31 2020 12:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46793 * 2 1 4 4 C 1.50697 * 109.46993 * 240.00397 * 2 1 3 5 5 H 1.07999 * 119.99792 * 270.46194 * 4 2 1 6 6 C 1.37877 * 120.00102 * 90.46894 * 4 2 1 7 7 N 1.31517 * 119.99532 * 176.41950 * 6 4 2 8 8 Si 1.86792 * 120.00070 * 356.41713 * 6 4 2 9 9 H 1.48498 * 109.47238 * 84.57507 * 8 6 4 10 10 H 1.48503 * 109.47456 * 204.57074 * 8 6 4 11 11 H 1.48501 * 109.47267 * 324.57236 * 8 6 4 12 12 N 1.46499 * 109.47330 * 119.99884 * 2 1 3 13 13 C 1.46496 * 119.99607 * 60.00303 * 12 2 1 14 14 C 1.34775 * 120.00011 * 240.00162 * 12 2 1 15 15 O 1.21507 * 120.00199 * 1.57275 * 14 12 2 16 16 C 1.48220 * 119.99759 * 181.57063 * 14 12 2 17 17 N 1.31922 * 119.25331 * 354.45982 * 16 14 12 18 18 C 1.33226 * 121.31644 * 179.97438 * 17 16 14 19 19 C 1.40846 * 120.96678 * 180.02562 * 18 17 16 20 20 C 1.35981 * 119.73944 * 179.97438 * 19 18 17 21 21 C 1.39446 * 121.09073 * 359.97438 * 20 19 18 22 22 C 1.36111 * 120.92308 * 0.02562 * 21 20 19 23 23 C 1.40447 * 119.65305 * 359.95228 * 22 21 20 24 24 C 1.40667 * 121.27435 * 180.02562 * 23 22 21 25 25 C 1.36683 * 118.24032 * 180.02562 * 24 23 22 26 26 Cl 1.73602 * 120.10602 * 179.97438 * 25 24 23 27 27 H 1.08996 * 109.46852 * 294.42926 * 1 2 3 28 28 H 1.09002 * 109.47190 * 54.42809 * 1 2 3 29 29 H 1.08998 * 109.46621 * 174.43212 * 1 2 3 30 30 H 0.97004 * 119.99768 * 180.02562 * 7 6 4 31 31 H 1.09011 * 109.47418 * 263.56269 * 13 12 2 32 32 H 1.09001 * 109.47639 * 23.56378 * 13 12 2 33 33 H 1.09006 * 109.47249 * 143.56740 * 13 12 2 34 34 H 1.08004 * 120.12970 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.45246 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.53478 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.17239 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.87999 * 0.04830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.2052 -1.7761 -1.2060 6 6 2.2713 0.0004 -2.3875 7 7 2.7761 -0.6064 -3.4395 8 14 1.8781 1.8250 -2.4609 9 1 3.0180 2.5997 -1.9079 10 1 1.6461 2.2251 -3.8721 11 1 0.6577 2.1010 -1.6611 12 7 2.0184 -0.6906 1.1962 13 6 1.6646 -2.0931 1.4279 14 6 2.7933 -0.0355 2.0833 15 8 3.0632 1.1358 1.9057 16 6 3.3161 -0.7440 3.2756 17 7 2.9257 -1.9817 3.5128 18 6 3.3699 -2.6570 4.5718 19 6 2.9487 -3.9783 4.8176 20 6 3.4184 -4.6446 5.9060 21 6 4.3145 -4.0417 6.7880 22 6 4.7451 -2.7666 6.5847 23 6 4.2827 -2.0462 5.4713 24 6 4.7057 -0.7268 5.2282 25 6 4.2160 -0.0834 4.1262 26 17 4.7051 1.5460 3.7802 27 1 -0.3633 0.4250 0.9356 28 1 -0.3634 0.5978 -0.8359 29 1 -0.3632 -1.0228 -0.0997 30 1 2.9446 -0.1063 -4.2534 31 1 0.8033 -2.1453 2.0941 32 1 1.4183 -2.5676 0.4780 33 1 2.5087 -2.6102 1.8842 34 1 2.2559 -4.4607 4.1439 35 1 3.0926 -5.6577 6.0898 36 1 4.6713 -4.5940 7.6448 37 1 5.4391 -2.3113 7.2759 38 1 5.3994 -0.2354 5.8944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334909397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:28 Heat of formation + Delta-G solvation = 25.907597 kcal Electronic energy + Delta-G solvation = -24068.756659 eV Core-core repulsion = 20516.577441 eV Total energy + Delta-G solvation = -3552.179218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22351 -40.57545 -38.23613 -37.45475 -37.12779 -34.92470 -34.40760 -32.52554 -31.34321 -30.86153 -27.74363 -27.27975 -26.34902 -24.80943 -23.25000 -23.03616 -20.69062 -19.26100 -19.19278 -18.70637 -18.08799 -17.36529 -16.65097 -16.53935 -16.10262 -15.83578 -15.37884 -15.24759 -14.97363 -14.76877 -14.43099 -14.32858 -14.16154 -13.96059 -13.41823 -13.36079 -13.26477 -13.15839 -12.66631 -12.62855 -12.52034 -12.38740 -12.33178 -12.06507 -11.77546 -11.35734 -11.32554 -10.94291 -10.82650 -10.12344 -9.84073 -9.34076 -9.26379 -8.36877 -6.41537 -0.93830 -0.55726 0.85912 1.01304 1.28756 1.33713 1.35344 1.41787 2.03313 2.22366 2.29155 2.88476 2.97922 3.06360 3.47318 3.49930 3.61085 3.81658 4.05882 4.26701 4.32434 4.43475 4.56628 4.59776 4.63727 4.68661 4.72898 4.78169 4.87769 5.02785 5.10244 5.15624 5.31739 5.35463 5.38818 5.47203 5.52734 5.76694 5.83178 6.12770 6.45356 6.62347 6.65570 7.15964 7.28673 8.78544 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.004306 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.026829 B = 6501.371829 C = 7540.756433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.226 3.774 3 H 0.041 0.959 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.924 3.076 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.238 1.238 12 N -0.572 5.572 13 C 0.089 3.911 14 C 0.537 3.463 15 O -0.561 6.561 16 C 0.105 3.895 17 N -0.427 5.427 18 C 0.092 3.908 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.095 4.095 22 C -0.099 4.099 23 C -0.089 4.089 24 C -0.041 4.041 25 C -0.071 4.071 26 Cl -0.035 7.035 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -8.063 25.952 27.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.124 3.876 3 H 0.059 0.941 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.575 5.575 8 Si 0.748 3.252 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.161 1.161 12 N -0.301 5.301 13 C -0.053 4.053 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.048 4.048 17 N -0.139 5.139 18 C -0.031 4.031 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.091 4.091 24 C -0.067 4.067 25 C -0.101 4.101 26 Cl -0.006 7.006 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.267 -7.767 25.055 26.329 hybrid contribution 0.542 1.471 -0.619 1.685 sum 2.809 -6.296 24.436 25.390 Atomic orbital electron populations 1.22153 0.95706 1.01957 1.00177 1.19097 0.92634 0.93404 0.82486 0.94070 1.21316 1.44301 0.95610 0.94883 0.93209 1.25633 0.93829 1.02301 0.95324 1.70004 1.44809 1.38555 1.04100 0.86139 0.80376 0.80866 0.77790 1.20993 1.20160 1.16116 1.48134 1.47213 1.13600 1.21203 1.22239 1.02233 0.80371 1.00484 1.18394 0.79833 0.86364 0.83097 1.90775 1.59966 1.16560 1.76692 1.21071 0.96676 0.91350 0.95659 1.68538 1.22937 1.05119 1.17344 1.19641 0.96115 0.96404 0.90975 1.21109 1.00767 0.90940 0.99441 1.21438 0.95157 1.01458 0.92444 1.21534 0.95297 0.94587 0.99811 1.21370 0.99981 0.95161 0.95231 1.19165 0.97931 0.94201 0.97852 1.21762 0.97466 0.93177 0.94280 1.21592 1.00521 0.89832 0.98197 1.98409 1.89635 1.17726 1.94816 0.93585 0.92494 0.92009 0.92236 0.91834 0.92707 0.88134 0.83745 0.81613 0.81274 0.81616 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.92 71.98 0.64 -5.46 16 2 C 0.23 11.42 2.21 44.25 0.10 11.52 16 3 H 0.04 2.27 4.68 -2.39 -0.01 2.25 16 4 C -0.52 -30.32 8.68 25.60 0.22 -30.10 16 5 H 0.05 3.11 6.94 -2.91 -0.02 3.09 16 6 C 0.03 1.70 5.47 84.65 0.46 2.16 16 7 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 8 Si 0.92 46.53 26.34 68.60 1.81 48.34 16 9 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.24 -11.03 5.83 99.48 0.58 -10.45 16 12 N -0.57 -26.20 2.75 -829.77 -2.28 -28.48 16 13 C 0.09 3.39 8.38 127.77 1.07 4.46 16 14 C 0.54 24.34 7.65 86.90 0.66 25.01 16 15 O -0.56 -28.19 13.21 -3.74 -0.05 -28.24 16 16 C 0.11 3.88 6.65 42.30 0.28 4.16 16 17 N -0.43 -13.68 5.92 -177.71 -1.05 -14.73 16 18 C 0.09 2.29 6.61 40.49 0.27 2.55 16 19 C -0.10 -1.87 9.99 22.38 0.22 -1.64 16 20 C -0.09 -0.89 9.94 22.04 0.22 -0.68 16 21 C -0.09 -0.78 9.95 22.07 0.22 -0.56 16 22 C -0.10 -1.14 9.77 22.31 0.22 -0.92 16 23 C -0.09 -1.81 5.75 -21.22 -0.12 -1.93 16 24 C -0.04 -0.90 9.66 22.50 0.22 -0.68 16 25 C -0.07 -2.24 6.32 22.42 0.14 -2.10 16 26 Cl -0.03 -1.18 25.93 -2.72 -0.07 -1.25 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.44 6.32 -2.39 -0.02 2.43 16 29 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 30 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.10 16 32 H 0.05 2.22 6.68 -2.39 -0.02 2.20 16 33 H 0.10 3.66 5.25 -3.57 -0.02 3.64 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 36 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 37 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 38 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -77.09 326.72 4.44 -72.65 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.97 Total: 4.38 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 4.83 Total: 5.81 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.04 Total: -101.69 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.81 Total: 48.34 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -77.09 4.44 -72.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334909397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.555 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds