Wall clock time and date at job start Tue Mar 31 2020 12:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47064 * 2 1 4 4 C 1.50696 * 109.47454 * 119.99832 * 2 1 3 5 5 H 1.08003 * 120.00181 * 120.00220 * 4 2 1 6 6 C 1.37880 * 120.00272 * 300.00646 * 4 2 1 7 7 N 1.31518 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00354 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47501 * 89.99404 * 8 6 4 10 10 H 1.48503 * 109.47120 * 209.99941 * 8 6 4 11 11 H 1.48504 * 109.46791 * 329.99599 * 8 6 4 12 12 N 1.46498 * 109.47085 * 240.00271 * 2 1 3 13 13 C 1.46498 * 119.99920 * 299.99381 * 12 2 1 14 14 C 1.34776 * 120.00209 * 120.00082 * 12 2 1 15 15 O 1.21604 * 119.99997 * 4.47924 * 14 12 2 16 16 C 1.47464 * 120.00165 * 184.48449 * 14 12 2 17 17 C 1.38758 * 120.37114 * 309.56833 * 16 14 12 18 18 C 1.38874 * 120.55301 * 179.97438 * 17 16 14 19 19 C 1.36376 * 121.22768 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 119.90862 * 180.27581 * 19 18 17 21 21 C 1.40860 * 120.17763 * 0.02562 * 19 18 17 22 22 N 1.33652 * 120.94976 * 180.02562 * 21 19 18 23 23 C 1.31073 * 121.34964 * 179.97438 * 22 21 19 24 24 C 1.39335 * 121.69734 * 0.02562 * 23 22 21 25 25 C 1.36680 * 119.85705 * 359.97438 * 24 23 22 26 26 C 1.40466 * 118.17396 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47348 * 60.00242 * 1 2 3 28 28 H 1.09001 * 109.46579 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46965 * 299.99552 * 1 2 3 30 30 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47271 * 273.18807 * 13 12 2 32 32 H 1.08999 * 109.47056 * 33.19623 * 13 12 2 33 33 H 1.09009 * 109.47036 * 153.18977 * 13 12 2 34 34 H 1.07990 * 119.72501 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.38468 * 180.02562 * 18 17 16 36 36 H 1.07993 * 119.15182 * 179.97438 * 23 22 21 37 37 H 1.07991 * 120.07040 * 180.02562 * 24 23 22 38 38 H 1.08004 * 120.91592 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4124 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1543 1.1023 -1.8516 16 6 3.2030 -0.6986 -3.3351 17 6 3.7691 -1.9651 -3.3054 18 6 4.1559 -2.5933 -4.4820 19 6 3.9926 -1.9882 -5.6933 20 17 4.4817 -2.8078 -7.1433 21 6 3.4232 -0.7021 -5.7713 22 7 3.2556 -0.0950 -6.9501 23 6 2.7262 1.1013 -7.0318 24 6 2.3135 1.7983 -5.8981 25 6 2.4573 1.2331 -4.6620 26 6 3.0253 -0.0491 -4.5810 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7094 1.1617 3.4844 31 1 2.3846 -2.7376 -0.9239 32 1 0.6664 -2.2859 -1.0346 33 1 1.6792 -2.2995 -2.4983 34 1 3.9100 -2.4666 -2.3595 35 1 4.5942 -3.5793 -4.4370 36 1 2.6076 1.5588 -8.0028 37 1 1.8802 2.7826 -5.9960 38 1 2.1437 1.7581 -3.7718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335763491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:32 Heat of formation + Delta-G solvation = 20.763358 kcal Electronic energy + Delta-G solvation = -23989.910934 eV Core-core repulsion = 20437.508646 eV Total energy + Delta-G solvation = -3552.402289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14080 -39.15417 -37.33635 -36.31046 -35.54295 -33.35302 -32.92023 -30.82800 -30.53019 -28.94628 -26.40617 -25.31630 -24.63374 -23.81191 -23.37915 -20.95094 -19.04091 -18.30033 -17.25240 -17.24037 -16.60965 -16.01056 -15.59267 -15.05662 -14.78841 -14.67489 -14.40098 -14.13843 -13.58697 -13.31329 -13.18965 -12.69386 -12.60515 -12.51478 -12.33606 -11.85241 -11.69030 -11.64700 -11.21740 -11.10868 -10.94734 -10.88744 -10.81645 -10.37149 -10.32583 -10.23756 -9.87027 -9.27871 -9.14335 -9.00799 -8.50655 -8.22343 -7.76035 -6.14732 -4.23075 0.03474 0.62042 1.67829 1.96677 2.57416 3.22445 3.23579 3.29968 3.31115 3.68039 3.93256 4.00888 4.33223 4.51056 4.63216 4.72779 4.83982 4.86291 5.13457 5.15072 5.17423 5.39892 5.57777 5.62649 5.72928 5.88919 5.94268 5.97444 6.16787 6.20460 6.29283 6.54161 6.65952 6.71185 6.93430 7.26646 7.38010 7.61940 7.69955 7.90369 8.07871 8.34119 8.67706 8.85129 9.43560 10.90690 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.003609 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.095696 B = 7755.657536 C = 8667.193268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.579 5.579 13 C 0.078 3.922 14 C 0.543 3.457 15 O -0.539 6.539 16 C -0.080 4.080 17 C -0.082 4.082 18 C -0.092 4.092 19 C -0.006 4.006 20 Cl -0.049 7.049 21 C 0.128 3.872 22 N -0.468 5.468 23 C 0.136 3.864 24 C -0.175 4.175 25 C -0.040 4.040 26 C -0.062 4.062 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.096 0.904 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -5.061 -16.654 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.066 4.066 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.034 4.034 20 Cl -0.019 7.019 21 C 0.006 3.994 22 N -0.176 5.176 23 C -0.036 4.036 24 C -0.195 4.195 25 C -0.066 4.066 26 C -0.065 4.065 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.525 -4.964 -17.183 18.063 hybrid contribution 0.092 -0.177 1.555 1.568 sum 2.617 -5.141 -15.628 16.659 Atomic orbital electron populations 1.22112 0.97960 0.99588 1.00990 1.19034 0.90967 0.94554 0.79654 0.91689 1.21271 1.32040 1.13109 0.90132 0.92185 1.24886 0.94842 0.94962 0.98996 1.69868 1.36201 1.22564 1.23897 0.86476 0.78687 0.79862 0.82265 1.20559 1.21085 1.19877 1.48248 1.47736 1.11798 1.23056 1.21804 1.02010 0.82925 0.99838 1.18007 0.79957 0.86205 0.82896 1.90777 1.55511 1.18157 1.77425 1.20351 0.99815 0.94686 0.93544 1.21443 0.96546 0.93283 0.98785 1.20757 0.99603 1.00892 0.90029 1.20582 1.01808 0.92264 0.88743 1.98366 1.89495 1.77313 1.36767 1.18339 0.98619 0.93562 0.88848 1.68065 1.13779 1.10428 1.25321 1.23004 0.91806 0.89826 0.98998 1.22000 1.02281 1.02089 0.93121 1.21786 0.92634 0.92766 0.99406 1.18475 1.00208 0.95570 0.92286 0.96932 0.94925 0.88574 0.92591 0.92682 0.90712 0.92371 0.83498 0.83697 0.82074 0.84074 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.94 37.16 0.33 -3.04 16 2 C 0.26 6.28 2.63 -69.08 -0.18 6.09 16 3 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -13.70 8.37 -34.44 -0.29 -13.98 16 5 H 0.06 1.53 7.56 -52.48 -0.40 1.13 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.58 -11.73 2.75 -176.52 -0.49 -12.22 16 13 C 0.08 1.24 8.39 59.85 0.50 1.74 16 14 C 0.54 10.87 6.61 -12.50 -0.08 10.79 16 15 O -0.54 -12.66 14.80 5.27 0.08 -12.59 16 16 C -0.08 -1.29 4.88 -104.66 -0.51 -1.80 16 17 C -0.08 -1.07 7.62 -39.15 -0.30 -1.37 16 18 C -0.09 -1.06 9.68 -40.02 -0.39 -1.45 16 19 C -0.01 -0.08 6.34 -39.26 -0.25 -0.33 16 20 Cl -0.05 -0.58 28.49 -51.86 -1.48 -2.05 16 21 C 0.13 1.87 6.60 -84.85 -0.56 1.31 16 22 N -0.47 -6.42 9.80 -10.97 -0.11 -6.53 16 23 C 0.14 1.50 11.15 -17.47 -0.19 1.31 16 24 C -0.18 -1.98 10.04 -39.74 -0.40 -2.38 16 25 C -0.04 -0.59 9.27 -39.31 -0.36 -0.95 16 26 C -0.06 -0.97 5.76 -106.54 -0.61 -1.58 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.05 0.82 7.53 -51.93 -0.39 0.43 16 32 H 0.07 1.20 6.44 -51.93 -0.33 0.86 16 33 H 0.06 0.78 5.72 -51.92 -0.30 0.48 16 34 H 0.15 1.75 6.70 -52.49 -0.35 1.39 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.15 2.45 6.35 -52.48 -0.33 2.11 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -30.64 330.16 -8.75 -39.39 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.95 Total: 1.28 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.39 Total: -3.99 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.03 Total: -42.46 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.64 -8.75 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335763491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.151 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds