Wall clock time and date at job start Tue Mar 31 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47064 * 2 1 4 4 C 1.50696 * 109.47454 * 119.99832 * 2 1 3 5 5 H 1.08003 * 120.00181 * 120.00220 * 4 2 1 6 6 C 1.37880 * 120.00272 * 300.00646 * 4 2 1 7 7 N 1.31518 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00354 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47501 * 89.99404 * 8 6 4 10 10 H 1.48503 * 109.47120 * 209.99941 * 8 6 4 11 11 H 1.48504 * 109.46791 * 329.99599 * 8 6 4 12 12 N 1.46498 * 109.47085 * 240.00271 * 2 1 3 13 13 C 1.46498 * 119.99920 * 299.99381 * 12 2 1 14 14 C 1.34776 * 120.00209 * 120.00082 * 12 2 1 15 15 O 1.21604 * 119.99997 * 4.47924 * 14 12 2 16 16 C 1.47464 * 120.00165 * 184.48449 * 14 12 2 17 17 C 1.38758 * 120.37114 * 309.56833 * 16 14 12 18 18 C 1.38874 * 120.55301 * 179.97438 * 17 16 14 19 19 C 1.36376 * 121.22768 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 119.90862 * 180.27581 * 19 18 17 21 21 C 1.40860 * 120.17763 * 0.02562 * 19 18 17 22 22 N 1.33652 * 120.94976 * 180.02562 * 21 19 18 23 23 C 1.31073 * 121.34964 * 179.97438 * 22 21 19 24 24 C 1.39335 * 121.69734 * 0.02562 * 23 22 21 25 25 C 1.36680 * 119.85705 * 359.97438 * 24 23 22 26 26 C 1.40466 * 118.17396 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47348 * 60.00242 * 1 2 3 28 28 H 1.09001 * 109.46579 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46965 * 299.99552 * 1 2 3 30 30 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47271 * 273.18807 * 13 12 2 32 32 H 1.08999 * 109.47056 * 33.19623 * 13 12 2 33 33 H 1.09009 * 109.47036 * 153.18977 * 13 12 2 34 34 H 1.07990 * 119.72501 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.38468 * 180.02562 * 18 17 16 36 36 H 1.07993 * 119.15182 * 179.97438 * 23 22 21 37 37 H 1.07991 * 120.07040 * 180.02562 * 24 23 22 38 38 H 1.08004 * 120.91592 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4124 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1543 1.1023 -1.8516 16 6 3.2030 -0.6986 -3.3351 17 6 3.7691 -1.9651 -3.3054 18 6 4.1559 -2.5933 -4.4820 19 6 3.9926 -1.9882 -5.6933 20 17 4.4817 -2.8078 -7.1433 21 6 3.4232 -0.7021 -5.7713 22 7 3.2556 -0.0950 -6.9501 23 6 2.7262 1.1013 -7.0318 24 6 2.3135 1.7983 -5.8981 25 6 2.4573 1.2331 -4.6620 26 6 3.0253 -0.0491 -4.5810 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7094 1.1617 3.4844 31 1 2.3846 -2.7376 -0.9239 32 1 0.6664 -2.2859 -1.0346 33 1 1.6792 -2.2995 -2.4983 34 1 3.9100 -2.4666 -2.3595 35 1 4.5942 -3.5793 -4.4370 36 1 2.6076 1.5588 -8.0028 37 1 1.8802 2.7826 -5.9960 38 1 2.1437 1.7581 -3.7718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335763491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:31 Heat of formation + Delta-G solvation = 3.091775 kcal Electronic energy + Delta-G solvation = -23990.677232 eV Core-core repulsion = 20437.508646 eV Total energy + Delta-G solvation = -3553.168586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23617 -40.59320 -38.34892 -37.36818 -37.22796 -34.85802 -34.31915 -32.03159 -31.78545 -30.42769 -27.81522 -27.31071 -25.73510 -24.84377 -24.62386 -22.51907 -20.41633 -19.46072 -18.58329 -18.33800 -18.21242 -17.52662 -17.16671 -16.37607 -16.09730 -15.87102 -15.60073 -15.43323 -14.87576 -14.56458 -14.44240 -14.35031 -13.72237 -13.60193 -13.55954 -13.48190 -13.18298 -12.94616 -12.74116 -12.72436 -12.62594 -12.35145 -12.18596 -12.10417 -11.88069 -11.36336 -11.21732 -11.09318 -10.58266 -10.46499 -9.97466 -9.45672 -9.26523 -8.15286 -6.31598 -1.01590 -0.35726 0.59360 0.98459 1.42549 1.43884 1.49377 1.53866 1.86563 2.19335 2.45318 2.88938 3.09625 3.13518 3.40136 3.55565 3.67575 3.76848 3.91993 4.16644 4.28973 4.35049 4.41293 4.55529 4.64189 4.73824 4.81021 4.85731 4.86565 4.97709 4.98465 5.02054 5.19610 5.28054 5.43447 5.56437 5.58853 5.64193 5.98716 6.13196 6.67157 6.73011 6.74849 7.17808 7.41071 8.89265 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.003609 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.095696 B = 7755.657536 C = 8667.193268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.585 5.585 13 C 0.076 3.924 14 C 0.542 3.458 15 O -0.589 6.589 16 C -0.108 4.108 17 C -0.064 4.064 18 C -0.083 4.083 19 C -0.008 4.008 20 Cl -0.035 7.035 21 C 0.112 3.888 22 N -0.482 5.482 23 C 0.141 3.859 24 C -0.154 4.154 25 C -0.075 4.075 26 C -0.075 4.075 27 H 0.020 0.980 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.205 0.795 37 H 0.173 0.827 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -7.314 -18.487 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.314 5.314 13 C -0.066 4.066 14 C 0.331 3.669 15 O -0.471 6.471 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.103 4.103 19 C -0.036 4.036 20 Cl -0.006 7.006 21 C -0.009 4.009 22 N -0.190 5.190 23 C -0.031 4.031 24 C -0.173 4.173 25 C -0.101 4.101 26 C -0.078 4.078 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.222 0.778 37 H 0.191 0.809 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.070 -7.263 -19.039 20.607 hybrid contribution -0.065 0.586 1.973 2.059 sum 3.004 -6.677 -17.066 18.570 Atomic orbital electron populations 1.21899 0.96927 1.00319 1.00106 1.18619 0.91688 0.92343 0.81279 0.96905 1.21555 1.31991 1.13181 0.90907 0.91789 1.25711 0.95011 0.95619 1.01970 1.70012 1.37250 1.23884 1.24466 0.85469 0.77708 0.79348 0.78590 1.20947 1.20716 1.18355 1.48189 1.47787 1.13435 1.22006 1.22031 1.02254 0.80414 1.01937 1.18576 0.78919 0.85638 0.83804 1.90732 1.57301 1.20494 1.78597 1.20003 1.03197 0.96276 0.91744 1.21633 0.94638 0.91838 1.00173 1.21046 0.98646 1.01986 0.88594 1.20796 1.01052 0.91919 0.89784 1.98371 1.89243 1.76833 1.36159 1.18522 0.99333 0.94395 0.88686 1.68143 1.14470 1.11573 1.24804 1.23710 0.89972 0.88915 1.00520 1.22369 1.00148 1.02975 0.91852 1.21715 0.95060 0.93375 0.99965 1.18569 1.00736 0.95966 0.92481 0.96091 0.93217 0.91113 0.92628 0.91256 0.90793 0.89573 0.82095 0.80022 0.77799 0.80921 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.94 71.98 0.64 -5.65 16 2 C 0.26 13.32 2.63 44.24 0.12 13.44 16 3 H 0.01 0.79 6.91 -2.39 -0.02 0.77 16 4 C -0.54 -28.43 8.37 25.60 0.21 -28.21 16 5 H 0.06 3.25 7.56 -2.91 -0.02 3.23 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.63 16 8 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 N -0.59 -24.29 2.75 -830.65 -2.29 -26.58 16 13 C 0.08 2.32 8.39 127.77 1.07 3.39 16 14 C 0.54 22.65 6.61 86.67 0.57 23.22 16 15 O -0.59 -29.75 14.80 -4.04 -0.06 -29.81 16 16 C -0.11 -3.51 4.88 -19.89 -0.10 -3.60 16 17 C -0.06 -1.56 7.62 22.55 0.17 -1.39 16 18 C -0.08 -1.65 9.68 21.99 0.21 -1.44 16 19 C -0.01 -0.18 6.34 22.48 0.14 -0.04 16 20 Cl -0.04 -0.74 28.49 -2.72 -0.08 -0.82 16 21 C 0.11 3.12 6.60 40.31 0.27 3.39 16 22 N -0.48 -12.19 9.80 -188.62 -1.85 -14.03 16 23 C 0.14 2.74 11.15 85.07 0.95 3.69 16 24 C -0.15 -3.27 10.04 22.17 0.22 -3.04 16 25 C -0.08 -2.26 9.27 22.45 0.21 -2.05 16 26 C -0.07 -2.32 5.76 -21.10 -0.12 -2.44 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 2.11 6.68 -2.39 -0.02 2.09 16 29 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.07 1.93 7.53 -2.39 -0.02 1.91 16 32 H 0.07 2.27 6.44 -2.39 -0.02 2.26 16 33 H 0.09 2.15 5.72 -2.38 -0.01 2.14 16 34 H 0.16 3.42 6.70 -2.92 -0.02 3.40 16 35 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.17 2.44 8.06 -2.92 -0.02 2.41 16 38 H 0.13 4.42 6.35 -2.91 -0.02 4.40 16 Total: -1.00 -70.47 330.16 4.13 -66.34 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.11 Total: 11.85 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.02 Total: 0.58 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.89 Total: -92.25 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.47 4.13 -66.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335763491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.435 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds