Wall clock time and date at job start Tue Mar 31 2020 12:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46816 * 2 1 4 4 C 1.46489 * 120.00533 * 274.99879 * 3 2 1 5 5 C 1.50698 * 109.47812 * 279.70142 * 4 3 2 6 6 H 1.08007 * 119.99432 * 4.88181 * 5 4 3 7 7 C 1.37875 * 120.00725 * 184.88607 * 5 4 3 8 8 N 1.31514 * 120.00118 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99705 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47279 * 90.00163 * 9 7 5 11 11 H 1.48495 * 109.46941 * 210.00328 * 9 7 5 12 12 H 1.48500 * 109.47247 * 330.00118 * 9 7 5 13 13 S 1.65606 * 119.99567 * 95.00281 * 3 2 1 14 14 O 1.42101 * 106.40120 * 330.19734 * 13 3 2 15 15 O 1.42101 * 106.40124 * 197.27627 * 13 3 2 16 16 N 1.65603 * 107.21577 * 83.73643 * 13 3 2 17 17 C 1.46500 * 120.00144 * 64.21320 * 16 13 3 18 18 C 1.50696 * 109.47134 * 164.93732 * 17 16 13 19 19 C 1.33389 * 125.20735 * 90.00136 * 18 17 16 20 20 C 1.38421 * 114.91950 * 179.97438 * 19 18 17 21 21 C 1.33384 * 114.92416 * 359.97438 * 20 19 18 22 22 C 1.50705 * 125.20365 * 179.97438 * 21 20 19 23 23 S 1.75884 * 109.59354 * 0.24392 * 21 20 19 24 24 H 1.09002 * 109.47307 * 299.99880 * 1 2 3 25 25 H 1.09005 * 109.47879 * 59.99613 * 1 2 3 26 26 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47271 * 240.00907 * 2 1 3 28 28 H 1.08993 * 109.47506 * 120.00518 * 2 1 3 29 29 H 1.09002 * 109.47004 * 39.69970 * 4 3 2 30 30 H 1.09006 * 109.47451 * 159.69658 * 4 3 2 31 31 H 0.96998 * 119.99749 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99984 * 244.20610 * 16 13 3 33 33 H 1.08997 * 109.47269 * 44.93318 * 17 16 13 34 34 H 1.09000 * 109.47041 * 284.93310 * 17 16 13 35 35 H 1.08002 * 122.53603 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.53557 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47238 * 89.99680 * 22 21 20 38 38 H 1.09007 * 109.46924 * 330.00066 * 22 21 20 39 39 H 1.08997 * 109.47203 * 210.00348 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2637 5 6 3.4425 1.7014 -1.9385 6 1 4.0508 0.9169 -1.5130 7 6 3.8413 2.3301 -3.0990 8 7 4.9620 1.9741 -3.6881 9 14 2.7890 3.6866 -3.8353 10 1 3.2077 4.9968 -3.2757 11 1 2.9606 3.7007 -5.3102 12 1 1.3622 3.4405 -3.5053 13 16 2.4121 2.1202 1.4288 14 8 1.5783 1.5411 2.4232 15 8 2.4495 3.5154 1.1620 16 7 3.9628 1.6734 1.8005 17 6 5.0696 2.0742 0.9284 18 6 6.3764 1.8774 1.6526 19 6 7.1054 0.7605 1.6339 20 6 8.2726 0.8135 2.3761 21 6 8.4918 1.9734 2.9971 22 6 9.6853 2.2831 3.8636 23 16 7.1710 3.0837 2.6561 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.3156 1.8731 -1.9139 30 1 2.1757 3.1806 -1.0660 31 1 5.2426 2.4167 -4.5043 32 1 4.1383 1.1464 2.5958 33 1 4.9580 3.1244 0.6590 34 1 5.0595 1.4643 0.0250 35 1 6.8075 -0.1184 1.0816 36 1 8.9546 -0.0210 2.4463 37 1 10.4817 2.7025 3.2488 38 1 10.0370 1.3670 4.3384 39 1 9.4004 3.0034 4.6304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:10 Heat of formation + Delta-G solvation = -49.898502 kcal Electronic energy + Delta-G solvation = -23050.845792 eV Core-core repulsion = 19632.867033 eV Total energy + Delta-G solvation = -3417.978759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.05447 -36.75551 -36.21055 -35.30923 -35.01520 -32.67750 -31.67987 -30.24247 -27.80949 -27.15726 -24.10767 -22.96021 -22.52370 -21.57125 -18.94799 -18.76731 -17.48263 -17.07360 -16.88170 -16.46936 -15.81091 -15.25176 -14.71237 -14.24538 -14.06096 -13.87560 -13.55476 -13.34123 -13.22416 -12.85362 -12.56875 -12.51662 -12.17339 -12.05456 -11.96523 -11.78654 -11.60801 -11.52164 -11.42521 -11.26330 -11.15964 -10.98959 -10.60778 -10.54961 -10.38279 -10.18213 -9.67434 -9.03850 -8.68043 -8.44281 -8.33301 -8.13774 -6.20227 -4.21110 0.94794 1.29697 1.71864 2.13182 2.83183 3.25218 3.32342 3.36434 3.50672 4.08515 4.32840 4.80551 4.87770 5.09660 5.12865 5.17922 5.32628 5.39410 5.43016 5.63401 5.66548 5.72955 5.84419 5.87401 5.95846 6.08331 6.24517 6.29499 6.37094 6.45430 6.52660 6.60806 6.64908 6.85202 7.07791 7.23095 7.44584 7.53755 8.36218 8.80498 9.40876 10.91225 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005202 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.890457 B = 5381.005702 C = 6673.613689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.212 3.788 5 C -0.544 4.544 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.786 3.214 14 O -0.995 6.995 15 O -0.981 6.981 16 N -1.126 6.126 17 C 0.189 3.811 18 C -0.173 4.173 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.188 4.188 22 C -0.080 4.080 23 S 0.100 5.900 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.409 0.591 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -2.976 11.654 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.583 4.583 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.965 6.965 16 N -0.885 5.885 17 C 0.061 3.939 18 C -0.292 4.292 19 C -0.152 4.152 20 C -0.170 4.170 21 C -0.306 4.306 22 C -0.138 4.138 23 S 0.364 5.636 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.344 -0.731 12.234 12.704 hybrid contribution 0.307 -1.257 -0.968 1.616 sum 3.651 -1.987 11.266 12.008 Atomic orbital electron populations 1.22223 0.96895 1.01544 1.02383 1.20997 0.93590 0.82434 1.02522 1.57523 1.78792 1.23172 1.23226 1.19596 0.98254 0.92303 0.80990 1.21413 1.05774 1.21831 1.09267 0.89899 1.24832 0.94699 0.96515 0.96450 1.69880 1.21710 1.41883 1.19265 0.86973 0.81726 0.83254 0.78637 1.19653 1.21076 1.18853 1.01728 0.72588 0.73682 0.72628 1.93562 1.65434 1.79631 1.59294 1.93566 1.86626 1.31027 1.85232 1.56057 1.24665 1.71265 1.36547 1.19896 0.79576 1.02663 0.91718 1.24567 1.02052 0.97190 1.05388 1.20180 0.94806 0.98940 1.01292 1.20047 0.98767 0.98083 1.00060 1.24510 1.01590 0.98000 1.06468 1.20301 0.93546 1.02351 0.97625 1.84331 1.14979 1.17706 1.46537 0.92413 0.92263 0.92210 0.89766 0.91813 0.94716 0.93690 0.92431 0.75874 0.89484 0.86904 0.83919 0.84594 0.90885 0.90778 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.15 0.38 -2.17 16 2 C 0.13 2.15 6.03 -4.04 -0.02 2.13 16 3 N -0.99 -19.10 2.84 -115.67 -0.33 -19.43 16 4 C 0.21 4.76 4.52 -5.20 -0.02 4.73 16 5 C -0.54 -13.60 9.05 -34.44 -0.31 -13.91 16 6 H 0.08 2.15 6.65 -52.48 -0.35 1.81 16 7 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -24.98 13.96 55.43 0.77 -24.20 16 9 Si 0.87 20.39 27.37 -169.99 -4.65 15.74 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -5.96 6.68 56.52 0.38 -5.58 16 13 S 2.79 53.31 6.06 -107.50 -0.65 52.66 16 14 O -1.00 -19.63 17.17 -57.17 -0.98 -20.61 16 15 O -0.98 -21.87 16.04 -57.17 -0.92 -22.78 16 16 N -1.13 -18.47 6.05 -11.66 -0.07 -18.54 16 17 C 0.19 3.32 6.64 -5.20 -0.03 3.28 16 18 C -0.17 -2.69 5.91 -36.00 -0.21 -2.90 16 19 C -0.12 -1.70 10.05 -41.21 -0.41 -2.12 16 20 C -0.14 -1.72 10.05 -41.21 -0.41 -2.14 16 21 C -0.19 -2.28 6.51 -36.00 -0.23 -2.51 16 22 C -0.08 -0.70 10.38 36.01 0.37 -0.32 16 23 S 0.10 1.40 23.31 -107.50 -2.51 -1.10 16 24 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 25 H 0.06 0.90 8.11 -51.93 -0.42 0.47 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 28 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 29 H 0.03 0.77 7.50 -51.93 -0.39 0.38 16 30 H 0.05 1.06 5.94 -51.93 -0.31 0.76 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.41 5.70 8.65 -34.47 -0.30 5.41 16 33 H 0.09 1.67 7.77 -51.93 -0.40 1.27 16 34 H 0.11 2.19 5.83 -51.93 -0.30 1.88 16 35 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -30.47 349.83 -10.48 -40.95 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.41 Total: 5.97 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.01 Total: -13.93 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.37 Total: -62.17 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.90 Total: -43.39 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.65 Total: 15.74 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -3.16 Total: 51.55 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.47 -10.48 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.944 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds