Wall clock time and date at job start Tue Mar 31 2020 12:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46816 * 2 1 4 4 C 1.46489 * 120.00533 * 274.99879 * 3 2 1 5 5 C 1.50698 * 109.47812 * 279.70142 * 4 3 2 6 6 H 1.08007 * 119.99432 * 4.88181 * 5 4 3 7 7 C 1.37875 * 120.00725 * 184.88607 * 5 4 3 8 8 N 1.31514 * 120.00118 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99705 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47279 * 90.00163 * 9 7 5 11 11 H 1.48495 * 109.46941 * 210.00328 * 9 7 5 12 12 H 1.48500 * 109.47247 * 330.00118 * 9 7 5 13 13 S 1.65606 * 119.99567 * 95.00281 * 3 2 1 14 14 O 1.42101 * 106.40120 * 330.19734 * 13 3 2 15 15 O 1.42101 * 106.40124 * 197.27627 * 13 3 2 16 16 N 1.65603 * 107.21577 * 83.73643 * 13 3 2 17 17 C 1.46500 * 120.00144 * 64.21320 * 16 13 3 18 18 C 1.50696 * 109.47134 * 164.93732 * 17 16 13 19 19 C 1.33389 * 125.20735 * 90.00136 * 18 17 16 20 20 C 1.38421 * 114.91950 * 179.97438 * 19 18 17 21 21 C 1.33384 * 114.92416 * 359.97438 * 20 19 18 22 22 C 1.50705 * 125.20365 * 179.97438 * 21 20 19 23 23 S 1.75884 * 109.59354 * 0.24392 * 21 20 19 24 24 H 1.09002 * 109.47307 * 299.99880 * 1 2 3 25 25 H 1.09005 * 109.47879 * 59.99613 * 1 2 3 26 26 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47271 * 240.00907 * 2 1 3 28 28 H 1.08993 * 109.47506 * 120.00518 * 2 1 3 29 29 H 1.09002 * 109.47004 * 39.69970 * 4 3 2 30 30 H 1.09006 * 109.47451 * 159.69658 * 4 3 2 31 31 H 0.96998 * 119.99749 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99984 * 244.20610 * 16 13 3 33 33 H 1.08997 * 109.47269 * 44.93318 * 17 16 13 34 34 H 1.09000 * 109.47041 * 284.93310 * 17 16 13 35 35 H 1.08002 * 122.53603 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.53557 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47238 * 89.99680 * 22 21 20 38 38 H 1.09007 * 109.46924 * 330.00066 * 22 21 20 39 39 H 1.08997 * 109.47203 * 210.00348 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2637 5 6 3.4425 1.7014 -1.9385 6 1 4.0508 0.9169 -1.5130 7 6 3.8413 2.3301 -3.0990 8 7 4.9620 1.9741 -3.6881 9 14 2.7890 3.6866 -3.8353 10 1 3.2077 4.9968 -3.2757 11 1 2.9606 3.7007 -5.3102 12 1 1.3622 3.4405 -3.5053 13 16 2.4121 2.1202 1.4288 14 8 1.5783 1.5411 2.4232 15 8 2.4495 3.5154 1.1620 16 7 3.9628 1.6734 1.8005 17 6 5.0696 2.0742 0.9284 18 6 6.3764 1.8774 1.6526 19 6 7.1054 0.7605 1.6339 20 6 8.2726 0.8135 2.3761 21 6 8.4918 1.9734 2.9971 22 6 9.6853 2.2831 3.8636 23 16 7.1710 3.0837 2.6561 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.3156 1.8731 -1.9139 30 1 2.1757 3.1806 -1.0660 31 1 5.2426 2.4167 -4.5043 32 1 4.1383 1.1464 2.5958 33 1 4.9580 3.1244 0.6590 34 1 5.0595 1.4643 0.0250 35 1 6.8075 -0.1184 1.0816 36 1 8.9546 -0.0210 2.4463 37 1 10.4817 2.7025 3.2488 38 1 10.0370 1.3670 4.3384 39 1 9.4004 3.0034 4.6304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336909311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:10 Heat of formation + Delta-G solvation = -70.662494 kcal Electronic energy + Delta-G solvation = -23051.746187 eV Core-core repulsion = 19632.867033 eV Total energy + Delta-G solvation = -3418.879153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.14361 -38.37384 -37.77906 -36.95360 -36.33292 -34.62529 -32.67299 -31.78554 -29.01690 -28.81401 -25.22748 -24.59271 -23.61606 -23.16376 -20.44681 -19.91782 -19.07299 -18.75392 -18.48053 -17.82327 -17.27330 -16.60542 -16.20655 -15.89231 -15.44994 -14.98829 -14.75956 -14.70148 -14.53528 -14.18858 -14.04441 -13.82686 -13.75545 -13.51379 -13.25765 -13.19436 -13.10408 -12.84057 -12.76952 -12.72543 -12.61393 -12.39581 -12.22859 -12.10099 -11.69456 -11.65445 -11.56988 -10.72656 -10.51525 -9.81839 -9.45048 -9.42789 -8.25022 -6.27569 -0.43308 0.05153 0.64208 1.06259 1.37338 1.42521 1.48065 1.73656 2.02492 2.37135 2.55583 3.10510 3.36185 3.74436 3.92608 4.00163 4.14678 4.38025 4.43557 4.46410 4.60278 4.68673 4.72067 4.77277 4.82983 4.90680 4.96711 5.01795 5.04295 5.13019 5.24944 5.35253 5.41185 5.44543 5.50805 5.62067 5.79081 6.09379 6.35075 6.76826 7.36428 8.88725 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005202 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.890457 B = 5381.005702 C = 6673.613689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.989 5.989 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.066 0.934 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.912 3.088 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.247 1.247 13 S 2.798 3.202 14 O -0.998 6.998 15 O -1.014 7.014 16 N -1.112 6.112 17 C 0.200 3.800 18 C -0.207 4.207 19 C -0.113 4.113 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.081 4.081 23 S 0.080 5.920 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.421 0.579 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -3.832 12.923 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.830 5.830 4 C 0.093 3.907 5 C -0.570 4.570 6 H 0.084 0.916 7 C -0.170 4.170 8 N -0.570 5.570 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.170 1.170 13 S 2.806 3.194 14 O -0.982 6.982 15 O -0.997 6.997 16 N -0.874 5.874 17 C 0.072 3.928 18 C -0.325 4.325 19 C -0.145 4.145 20 C -0.180 4.180 21 C -0.288 4.288 22 C -0.140 4.140 23 S 0.344 5.656 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.622 -1.611 13.528 14.097 hybrid contribution 0.304 -1.075 -1.259 1.683 sum 3.926 -2.686 12.269 13.159 Atomic orbital electron populations 1.22205 0.95398 1.03372 1.01756 1.21276 0.94899 0.80841 1.03395 1.57468 1.79208 1.24325 1.21979 1.19364 0.97125 0.91991 0.82172 1.21595 1.06214 1.20513 1.08643 0.91624 1.25481 0.95677 0.98568 0.97239 1.69986 1.23441 1.43532 1.20016 0.86236 0.81374 0.80641 0.78029 1.20162 1.20709 1.16998 1.01235 0.72852 0.72929 0.72381 1.93551 1.65949 1.79473 1.59237 1.93524 1.87222 1.33304 1.85673 1.55751 1.23558 1.71195 1.36870 1.19538 0.81148 1.00576 0.91493 1.24347 1.01956 0.98669 1.07543 1.20415 0.95049 0.98417 1.00584 1.20300 0.98595 0.99211 0.99855 1.24994 1.01316 0.96868 1.05655 1.20471 0.92196 1.03822 0.97489 1.84356 1.16352 1.18361 1.46578 0.93163 0.92719 0.89208 0.90012 0.89872 0.93775 0.94788 0.92530 0.74332 0.91866 0.89180 0.83545 0.81737 0.89726 0.88539 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.24 71.98 0.74 -3.94 16 2 C 0.12 3.82 6.03 86.38 0.52 4.34 16 3 N -0.99 -37.95 2.84 -519.88 -1.48 -39.42 16 4 C 0.22 9.76 4.52 85.63 0.39 10.14 16 5 C -0.53 -26.90 9.05 25.60 0.23 -26.66 16 6 H 0.07 3.51 6.65 -2.91 -0.02 3.49 16 7 C 0.03 1.62 5.47 84.65 0.46 2.09 16 8 N -0.93 -53.32 13.96 21.45 0.30 -53.02 16 9 Si 0.91 41.90 27.37 68.60 1.88 43.78 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.25 -10.52 6.68 99.48 0.67 -9.86 16 13 S 2.80 106.84 6.06 -56.49 -0.34 106.50 16 14 O -1.00 -38.35 17.17 -128.00 -2.20 -40.55 16 15 O -1.01 -45.81 16.04 -128.00 -2.05 -47.87 16 16 N -1.11 -36.72 6.05 -190.80 -1.15 -37.87 16 17 C 0.20 7.27 6.64 85.63 0.57 7.84 16 18 C -0.21 -6.47 5.91 24.59 0.15 -6.32 16 19 C -0.11 -3.08 10.05 21.22 0.21 -2.87 16 20 C -0.15 -3.38 10.05 21.21 0.21 -3.17 16 21 C -0.17 -3.76 6.51 24.59 0.16 -3.60 16 22 C -0.08 -1.16 10.38 71.24 0.74 -0.42 16 23 S 0.08 2.20 23.31 -56.49 -1.32 0.88 16 24 H 0.05 1.47 7.97 -2.39 -0.02 1.45 16 25 H 0.05 1.55 8.11 -2.38 -0.02 1.54 16 26 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 28 H 0.08 2.29 7.78 -2.39 -0.02 2.27 16 29 H 0.04 1.90 7.50 -2.39 -0.02 1.88 16 30 H 0.03 1.61 5.94 -2.38 -0.01 1.60 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.42 11.59 8.65 -96.74 -0.84 10.75 16 33 H 0.06 2.57 7.77 -2.39 -0.02 2.55 16 34 H 0.09 3.67 5.83 -2.39 -0.01 3.65 16 35 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.37 349.83 -1.80 -67.16 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.19 Total: 22.97 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 4.38 Total: -22.57 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -2.33 Total: -130.32 kcal Atomic # 8 Polarization: -84.16 SS G_CDS: -4.25 Total: -88.41 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Atomic # 16 Polarization: 109.04 SS G_CDS: -1.66 Total: 107.38 kcal Total: -65.37 -1.80 -67.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.501 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds