Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47594 * 2 1 4 4 C 1.46495 * 120.00189 * 275.00555 * 3 2 1 5 5 C 1.50698 * 109.47193 * 280.44281 * 4 3 2 6 6 H 1.07997 * 119.99518 * 4.67435 * 5 4 3 7 7 C 1.37873 * 120.00117 * 184.67324 * 5 4 3 8 8 N 1.31513 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99899 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47109 * 60.00279 * 9 7 5 11 11 H 1.48501 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47499 * 300.00271 * 9 7 5 13 13 S 1.65604 * 119.99955 * 94.99688 * 3 2 1 14 14 O 1.42098 * 106.40283 * 330.05438 * 13 3 2 15 15 O 1.42096 * 106.40200 * 197.13303 * 13 3 2 16 16 N 1.65607 * 107.21363 * 83.59157 * 13 3 2 17 17 C 1.46497 * 119.99715 * 66.04302 * 16 13 3 18 18 C 1.53005 * 109.46529 * 165.77399 * 17 16 13 19 19 C 1.50702 * 109.46807 * 179.97438 * 18 17 16 20 20 C 1.33389 * 125.20274 * 89.99905 * 19 18 17 21 21 C 1.38425 * 114.92070 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.91996 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20223 * 269.69226 * 19 18 17 24 24 H 1.09002 * 109.47058 * 299.99848 * 1 2 3 25 25 H 1.09003 * 109.47010 * 59.99704 * 1 2 3 26 26 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47058 * 240.00152 * 2 1 3 28 28 H 1.09003 * 109.47010 * 120.00296 * 2 1 3 29 29 H 1.09001 * 109.47085 * 40.44513 * 4 3 2 30 30 H 1.08998 * 109.47286 * 160.43997 * 4 3 2 31 31 H 0.97006 * 120.00200 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99823 * 246.03777 * 16 13 3 33 33 H 1.09000 * 109.47037 * 45.77390 * 17 16 13 34 34 H 1.09003 * 109.47172 * 285.76977 * 17 16 13 35 35 H 1.08993 * 109.47614 * 59.99933 * 18 17 16 36 36 H 1.09003 * 109.47049 * 299.99653 * 18 17 16 37 37 H 1.08000 * 122.53838 * 359.95374 * 20 19 18 38 38 H 1.08002 * 122.53909 * 180.02562 * 21 20 19 39 39 H 1.08008 * 125.20112 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4336 1.6875 -1.9474 6 1 4.0373 0.8980 -1.5249 7 6 3.8296 2.3102 -3.1121 8 7 3.0946 3.2719 -3.6263 9 14 5.4108 1.7886 -3.9590 10 1 5.3228 0.3537 -4.3313 11 1 5.6103 2.6065 -5.1822 12 1 6.5566 1.9912 -3.0364 13 16 2.4123 2.1201 1.4287 14 8 1.5761 1.5437 2.4225 15 8 2.4532 3.5150 1.1610 16 7 3.9615 1.6700 1.8026 17 6 5.0747 2.1013 0.9535 18 6 6.3965 1.8670 1.6876 19 6 7.5417 2.3101 0.8139 20 6 8.0655 3.5367 0.7963 21 6 9.1146 3.7103 -0.0900 22 6 9.4430 2.6245 -0.7916 23 16 8.3968 1.2870 -0.3329 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3089 1.8834 -1.9087 30 1 2.1893 3.1799 -1.0649 31 1 3.3731 3.7097 -4.4459 32 1 4.1318 1.1208 2.5838 33 1 4.9683 3.1620 0.7261 34 1 5.0676 1.5284 0.0262 35 1 6.5028 0.8064 1.9151 36 1 6.4036 2.4400 2.6149 37 1 7.6987 4.3341 1.4256 38 1 9.6288 4.6532 -0.2040 39 1 10.2331 2.5734 -1.5262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336920832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -53.047668 kcal Electronic energy + Delta-G solvation = -23312.046209 eV Core-core repulsion = 19893.930891 eV Total energy + Delta-G solvation = -3418.115317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.94712 -36.64799 -36.04041 -35.47665 -35.18233 -32.69419 -31.52275 -29.90826 -27.30852 -26.59944 -23.88952 -23.14589 -22.07330 -21.63252 -19.18495 -18.84528 -17.33190 -16.83317 -16.62161 -16.41670 -15.73293 -15.39969 -15.05861 -14.51435 -14.28673 -13.76781 -13.32538 -13.04364 -12.83998 -12.81646 -12.45480 -12.33488 -12.04878 -11.98296 -11.82828 -11.64271 -11.44832 -11.28153 -11.19986 -11.17874 -11.02033 -10.92926 -10.58644 -10.49461 -10.35351 -10.01784 -9.79481 -9.02285 -8.51564 -8.49194 -8.28825 -8.04436 -6.09743 -4.16575 1.08730 1.33870 1.76305 2.12920 2.86774 3.28562 3.33331 3.36063 3.55448 4.17475 4.38142 4.86768 5.04310 5.13418 5.19821 5.24251 5.30139 5.42457 5.54313 5.67256 5.76570 5.78809 5.82172 5.98098 6.09291 6.16638 6.29562 6.35328 6.40302 6.50606 6.60610 6.69065 6.73032 7.28339 7.39433 7.46527 7.70140 7.86832 8.16956 8.87189 9.49571 10.97954 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.006062 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.477321 B = 4617.595230 C = 6103.288979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.888 5.888 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.978 6.978 16 N -1.132 6.132 17 C 0.122 3.878 18 C -0.054 4.054 19 C -0.164 4.164 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.219 4.219 23 S 0.101 5.899 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -4.626 8.471 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.189 1.189 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.961 6.961 16 N -0.890 5.890 17 C -0.005 4.005 18 C -0.095 4.095 19 C -0.283 4.283 20 C -0.170 4.170 21 C -0.163 4.163 22 C -0.355 4.355 23 S 0.365 5.635 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.844 -5.281 8.181 12.504 hybrid contribution 1.409 0.761 -0.313 1.632 sum 9.254 -4.520 7.868 12.960 Atomic orbital electron populations 1.22212 0.96956 1.01306 1.02497 1.20944 0.93658 0.82901 1.01951 1.57720 1.78551 1.22946 1.24100 1.19217 0.97207 0.92590 0.78880 1.21453 1.07649 1.20011 1.08729 0.91942 1.24909 0.96912 0.94661 0.97005 1.69922 1.38151 1.23615 1.20856 0.86817 0.84471 0.78595 0.79394 1.20220 1.21375 1.18857 1.01744 0.72560 0.73741 0.72656 1.93548 1.65404 1.79848 1.59693 1.93577 1.86497 1.30911 1.85161 1.56016 1.25236 1.69270 1.38514 1.21417 0.83526 1.02011 0.93531 1.20337 0.90312 1.01901 0.96925 1.24308 1.02906 0.97565 1.03478 1.20127 0.98085 0.96852 1.01942 1.20123 0.99020 0.99313 0.97857 1.25559 1.05874 0.97000 1.07055 1.84293 1.28278 1.14300 1.36658 0.92476 0.92098 0.92473 0.90164 0.92252 0.94843 0.92598 0.92575 0.76252 0.89937 0.89314 0.90425 0.89586 0.84207 0.84478 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.26 6.02 -4.04 -0.02 2.24 16 3 N -0.99 -20.04 2.84 -115.67 -0.33 -20.37 16 4 C 0.24 5.93 5.46 -5.20 -0.03 5.90 16 5 C -0.54 -13.65 8.48 -34.44 -0.29 -13.94 16 6 H 0.06 1.51 6.57 -52.49 -0.35 1.16 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 9 Si 0.88 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 13 S 2.79 54.36 6.08 -107.50 -0.65 53.70 16 14 O -1.00 -20.08 17.17 -57.17 -0.98 -21.06 16 15 O -0.98 -22.70 15.99 -57.17 -0.91 -23.62 16 16 N -1.13 -17.68 6.06 -10.61 -0.06 -17.75 16 17 C 0.12 2.00 6.21 -4.04 -0.03 1.98 16 18 C -0.05 -0.70 5.85 -27.88 -0.16 -0.86 16 19 C -0.16 -2.32 5.76 -36.00 -0.21 -2.53 16 20 C -0.14 -1.89 10.05 -41.21 -0.41 -2.31 16 21 C -0.13 -1.70 10.18 -41.21 -0.42 -2.12 16 22 C -0.22 -2.85 11.23 29.04 0.33 -2.53 16 23 S 0.10 1.43 23.33 -107.50 -2.51 -1.08 16 24 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 25 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 28 H 0.06 0.89 7.79 -51.93 -0.40 0.48 16 29 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.06 1.52 6.77 -51.93 -0.35 1.17 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.41 4.99 8.65 -34.47 -0.30 4.69 16 33 H 0.08 1.53 7.74 -51.93 -0.40 1.13 16 34 H 0.09 1.64 5.93 -51.93 -0.31 1.33 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -31.54 353.15 -10.83 -42.37 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.45 Total: 6.40 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.96 Total: -14.76 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.34 Total: -62.55 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.90 Total: -44.68 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -3.16 Total: 52.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.54 -10.83 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.676 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds