Wall clock time and date at job start Tue Mar 31 2020 12:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47594 * 2 1 4 4 C 1.46495 * 120.00189 * 275.00555 * 3 2 1 5 5 C 1.50698 * 109.47193 * 280.44281 * 4 3 2 6 6 H 1.07997 * 119.99518 * 4.67435 * 5 4 3 7 7 C 1.37873 * 120.00117 * 184.67324 * 5 4 3 8 8 N 1.31513 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99899 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47109 * 60.00279 * 9 7 5 11 11 H 1.48501 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47499 * 300.00271 * 9 7 5 13 13 S 1.65604 * 119.99955 * 94.99688 * 3 2 1 14 14 O 1.42098 * 106.40283 * 330.05438 * 13 3 2 15 15 O 1.42096 * 106.40200 * 197.13303 * 13 3 2 16 16 N 1.65607 * 107.21363 * 83.59157 * 13 3 2 17 17 C 1.46497 * 119.99715 * 66.04302 * 16 13 3 18 18 C 1.53005 * 109.46529 * 165.77399 * 17 16 13 19 19 C 1.50702 * 109.46807 * 179.97438 * 18 17 16 20 20 C 1.33389 * 125.20274 * 89.99905 * 19 18 17 21 21 C 1.38425 * 114.92070 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.91996 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20223 * 269.69226 * 19 18 17 24 24 H 1.09002 * 109.47058 * 299.99848 * 1 2 3 25 25 H 1.09003 * 109.47010 * 59.99704 * 1 2 3 26 26 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47058 * 240.00152 * 2 1 3 28 28 H 1.09003 * 109.47010 * 120.00296 * 2 1 3 29 29 H 1.09001 * 109.47085 * 40.44513 * 4 3 2 30 30 H 1.08998 * 109.47286 * 160.43997 * 4 3 2 31 31 H 0.97006 * 120.00200 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99823 * 246.03777 * 16 13 3 33 33 H 1.09000 * 109.47037 * 45.77390 * 17 16 13 34 34 H 1.09003 * 109.47172 * 285.76977 * 17 16 13 35 35 H 1.08993 * 109.47614 * 59.99933 * 18 17 16 36 36 H 1.09003 * 109.47049 * 299.99653 * 18 17 16 37 37 H 1.08000 * 122.53838 * 359.95374 * 20 19 18 38 38 H 1.08002 * 122.53909 * 180.02562 * 21 20 19 39 39 H 1.08008 * 125.20112 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4336 1.6875 -1.9474 6 1 4.0373 0.8980 -1.5249 7 6 3.8296 2.3102 -3.1121 8 7 3.0946 3.2719 -3.6263 9 14 5.4108 1.7886 -3.9590 10 1 5.3228 0.3537 -4.3313 11 1 5.6103 2.6065 -5.1822 12 1 6.5566 1.9912 -3.0364 13 16 2.4123 2.1201 1.4287 14 8 1.5761 1.5437 2.4225 15 8 2.4532 3.5150 1.1610 16 7 3.9615 1.6700 1.8026 17 6 5.0747 2.1013 0.9535 18 6 6.3965 1.8670 1.6876 19 6 7.5417 2.3101 0.8139 20 6 8.0655 3.5367 0.7963 21 6 9.1146 3.7103 -0.0900 22 6 9.4430 2.6245 -0.7916 23 16 8.3968 1.2870 -0.3329 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3089 1.8834 -1.9087 30 1 2.1893 3.1799 -1.0649 31 1 3.3731 3.7097 -4.4459 32 1 4.1318 1.1208 2.5838 33 1 4.9683 3.1620 0.7261 34 1 5.0676 1.5284 0.0262 35 1 6.5028 0.8064 1.9151 36 1 6.4036 2.4400 2.6149 37 1 7.6987 4.3341 1.4256 38 1 9.6288 4.6532 -0.2040 39 1 10.2331 2.5734 -1.5262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336920832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:25 Heat of formation + Delta-G solvation = -74.432239 kcal Electronic energy + Delta-G solvation = -23312.973513 eV Core-core repulsion = 19893.930891 eV Total energy + Delta-G solvation = -3419.042622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.97627 -38.29794 -37.67079 -36.87520 -36.75191 -34.65081 -32.65931 -31.49006 -28.54932 -28.32509 -25.02322 -24.92318 -23.32420 -23.07403 -20.45467 -20.10395 -18.80897 -18.55557 -18.26758 -17.75697 -17.29390 -16.73645 -16.36174 -16.09430 -15.68313 -15.27276 -14.79680 -14.61553 -14.11642 -13.94162 -13.76604 -13.64279 -13.60105 -13.41979 -13.31578 -13.15471 -12.98794 -12.92584 -12.70789 -12.67300 -12.53869 -12.29621 -12.16424 -12.05974 -11.73674 -11.62595 -11.54794 -10.54559 -10.40950 -9.77078 -9.54617 -9.35467 -8.13464 -6.26087 -0.29035 0.10999 0.74538 1.11525 1.44662 1.48158 1.53337 1.85366 2.03670 2.45346 2.63175 3.19403 3.47262 3.82441 3.99806 4.09128 4.12916 4.25719 4.42763 4.48104 4.53983 4.64870 4.70427 4.75347 4.80912 4.94198 5.01507 5.17158 5.20319 5.26126 5.31559 5.40753 5.44296 5.55453 5.62123 5.80652 5.93397 6.14736 6.26282 6.85398 7.43929 8.94380 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.006062 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.477321 B = 4617.595230 C = 6103.288979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.928 5.928 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.251 1.251 13 S 2.799 3.201 14 O -1.004 7.004 15 O -1.018 7.018 16 N -1.112 6.112 17 C 0.125 3.875 18 C -0.046 4.046 19 C -0.181 4.181 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.221 4.221 23 S 0.071 5.929 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.016 0.984 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.425 0.575 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.183 -6.071 9.457 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.568 5.568 9 Si 0.763 3.237 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.175 1.175 13 S 2.807 3.193 14 O -0.988 6.988 15 O -1.002 7.002 16 N -0.875 5.875 17 C -0.002 4.002 18 C -0.086 4.086 19 C -0.299 4.299 20 C -0.178 4.178 21 C -0.172 4.172 22 C -0.356 4.356 23 S 0.335 5.665 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.460 -6.767 9.208 14.834 hybrid contribution 0.889 1.211 -0.558 1.603 sum 10.349 -5.556 8.649 14.587 Atomic orbital electron populations 1.22198 0.96033 1.03161 1.01349 1.21243 0.94569 0.81219 1.03308 1.57620 1.79308 1.24128 1.22645 1.18741 0.96433 0.91126 0.80233 1.21734 1.07621 1.19564 1.08284 0.90694 1.25697 0.99877 0.94728 0.97933 1.70062 1.40103 1.25224 1.21442 0.85890 0.81197 0.78416 0.78207 1.19203 1.21996 1.17522 1.01159 0.73160 0.72804 0.72216 1.93537 1.66145 1.79618 1.59469 1.93530 1.87272 1.33712 1.85663 1.55549 1.23622 1.69289 1.39056 1.21306 0.85395 0.99974 0.93526 1.20312 0.87638 1.03716 0.96952 1.24484 1.03537 0.97855 1.03999 1.20472 0.98158 0.97053 1.02086 1.20456 0.98918 1.00341 0.97446 1.25908 1.06038 0.96309 1.07387 1.84330 1.29246 1.15535 1.37429 0.93299 0.93548 0.89137 0.90132 0.89487 0.96604 0.96069 0.92811 0.73901 0.92563 0.91312 0.88297 0.87434 0.82942 0.82149 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.12 3.99 6.02 86.38 0.52 4.51 16 3 N -1.00 -40.14 2.84 -519.86 -1.48 -41.62 16 4 C 0.26 12.92 5.46 85.63 0.47 13.39 16 5 C -0.53 -27.10 8.48 25.60 0.22 -26.88 16 6 H 0.08 3.56 6.57 -2.91 -0.02 3.54 16 7 C 0.02 0.92 5.46 84.65 0.46 1.39 16 8 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 9 Si 0.94 41.49 29.54 68.60 2.03 43.52 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 13 S 2.80 108.01 6.08 -56.49 -0.34 107.66 16 14 O -1.00 -38.85 17.17 -128.00 -2.20 -41.05 16 15 O -1.02 -48.28 15.99 -128.00 -2.05 -50.33 16 16 N -1.11 -32.98 6.06 -187.48 -1.14 -34.12 16 17 C 0.12 3.98 6.21 86.38 0.54 4.52 16 18 C -0.05 -1.07 5.85 29.85 0.17 -0.90 16 19 C -0.18 -4.79 5.76 24.59 0.14 -4.65 16 20 C -0.15 -3.72 10.05 21.22 0.21 -3.50 16 21 C -0.14 -3.31 10.18 21.21 0.22 -3.09 16 22 C -0.22 -5.26 11.23 66.72 0.75 -4.51 16 23 S 0.07 1.90 23.33 -56.49 -1.32 0.58 16 24 H 0.05 1.55 7.96 -2.39 -0.02 1.53 16 25 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 28 H 0.09 2.37 7.79 -2.39 -0.02 2.35 16 29 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.02 1.21 6.77 -2.39 -0.02 1.20 16 31 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 32 H 0.42 9.27 8.65 -96.74 -0.84 8.44 16 33 H 0.06 2.10 7.74 -2.39 -0.02 2.08 16 34 H 0.07 2.48 5.93 -2.39 -0.01 2.47 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -68.55 353.15 -1.55 -70.10 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.22 Total: 23.00 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.44 Total: -24.10 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -2.33 Total: -129.39 kcal Atomic # 8 Polarization: -87.13 SS G_CDS: -4.24 Total: -91.37 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 109.90 SS G_CDS: -1.66 Total: 108.24 kcal Total: -68.55 -1.55 -70.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.330 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds