Wall clock time and date at job start Tue Mar 31 2020 12:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47420 * 2 1 4 4 C 1.46500 * 120.00197 * 274.03128 * 3 2 1 5 5 C 1.50702 * 109.46733 * 280.96759 * 4 3 2 6 6 H 1.07999 * 120.00489 * 3.21247 * 5 4 3 7 7 C 1.37884 * 119.99747 * 183.20863 * 5 4 3 8 8 N 1.31512 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99773 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47287 * 90.00323 * 9 7 5 11 11 H 1.48497 * 109.46972 * 209.99902 * 9 7 5 12 12 H 1.48493 * 109.47143 * 329.99904 * 9 7 5 13 13 S 1.65600 * 119.99893 * 94.02262 * 3 2 1 14 14 O 1.42096 * 106.40658 * 336.24233 * 13 3 2 15 15 O 1.42102 * 106.40443 * 203.31970 * 13 3 2 16 16 N 1.65605 * 107.21569 * 89.78194 * 13 3 2 17 17 C 1.46494 * 119.99908 * 65.59612 * 16 13 3 18 18 C 1.50705 * 109.47046 * 164.31472 * 17 16 13 19 19 S 1.75877 * 125.20654 * 270.02589 * 18 17 16 20 20 C 1.75888 * 90.97499 * 179.97438 * 19 18 17 21 21 C 1.33393 * 109.58787 * 359.97438 * 20 19 18 22 22 C 1.33395 * 125.20287 * 89.98428 * 18 17 16 23 23 C 1.50707 * 122.53833 * 0.05527 * 22 18 17 24 24 H 1.08993 * 109.47003 * 305.05294 * 1 2 3 25 25 H 1.08997 * 109.46790 * 65.05070 * 1 2 3 26 26 H 1.08995 * 109.47108 * 185.05085 * 1 2 3 27 27 H 1.09004 * 109.47298 * 239.99808 * 2 1 3 28 28 H 1.09001 * 109.47023 * 119.99939 * 2 1 3 29 29 H 1.08995 * 109.47084 * 40.96718 * 4 3 2 30 30 H 1.09002 * 109.47105 * 160.97003 * 4 3 2 31 31 H 0.97003 * 119.99811 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99644 * 245.59669 * 16 13 3 33 33 H 1.09001 * 109.47373 * 44.31909 * 17 16 13 34 34 H 1.08999 * 109.47139 * 284.31536 * 17 16 13 35 35 H 1.07996 * 125.20413 * 179.97438 * 20 19 18 36 36 H 1.08003 * 122.53636 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46598 * 89.99904 * 23 22 18 38 38 H 1.08996 * 109.47179 * 210.00290 * 23 22 18 39 39 H 1.09001 * 109.46897 * 330.00372 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1785 2.1015 -1.2656 5 6 3.4583 1.6671 -1.9323 6 1 4.0630 0.8911 -1.4867 7 6 3.8571 2.2602 -3.1114 8 7 3.1209 3.2054 -3.6539 9 14 5.4430 1.7212 -3.9383 10 1 5.1565 0.6117 -4.8828 11 1 6.0272 2.8660 -4.6821 12 1 6.4059 1.2575 -2.9074 13 16 2.3893 2.1282 1.4306 14 8 1.6437 1.4587 2.4381 15 8 2.2917 3.5255 1.1908 16 7 3.9852 1.8183 1.7461 17 6 5.0241 2.3586 0.8659 18 6 6.3612 2.2737 1.5561 19 16 7.0547 3.5238 2.5806 20 6 8.4864 2.5416 2.8614 21 6 8.3720 1.3863 2.2045 22 6 7.1995 1.2386 1.4839 23 6 6.8932 0.0021 0.6787 24 1 -0.3633 0.5902 0.8412 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3633 -1.0236 0.0905 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3349 1.8798 -1.9191 30 1 2.2158 3.1735 -1.0713 31 1 3.4013 3.6224 -4.4836 32 1 4.2319 1.2790 2.5137 33 1 4.7997 3.4001 0.6356 34 1 5.0546 1.7806 -0.0577 35 1 9.3291 2.8297 3.4722 36 1 9.1365 0.6239 2.2327 37 1 7.2707 0.1268 -0.3362 38 1 7.3724 -0.8607 1.1412 39 1 5.8148 -0.1540 0.6485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336928107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:13 Heat of formation + Delta-G solvation = -53.215384 kcal Electronic energy + Delta-G solvation = -23572.848014 eV Core-core repulsion = 20154.725424 eV Total energy + Delta-G solvation = -3418.122590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.48493 -36.66982 -36.05438 -35.21303 -34.79513 -32.74930 -30.74908 -29.94503 -28.25156 -26.66033 -24.50480 -23.17580 -22.38303 -21.70838 -18.89301 -18.33294 -17.59996 -16.95929 -16.71750 -16.33939 -15.61899 -15.17528 -14.98280 -14.32278 -13.98654 -13.78318 -13.58276 -13.28937 -12.94176 -12.71037 -12.45246 -12.10047 -12.02673 -11.92730 -11.82651 -11.69062 -11.64207 -11.42985 -11.33918 -11.25263 -11.08854 -10.96106 -10.62744 -10.53458 -10.40301 -10.04686 -9.83644 -9.01712 -8.61769 -8.54943 -8.23855 -8.07034 -6.15907 -4.23038 0.94928 1.36510 1.73919 2.10957 2.73728 3.21112 3.28687 3.29890 3.60221 4.17171 4.31152 4.83714 4.96154 5.12773 5.17736 5.33795 5.42114 5.48586 5.57729 5.75067 5.78587 5.82248 5.85393 6.01898 6.08596 6.12541 6.17729 6.33629 6.36588 6.55454 6.62564 6.67025 6.70596 7.26858 7.35851 7.43589 7.65648 7.81205 8.11039 8.81321 9.42789 10.91776 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.006770 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.210980 B = 4135.100120 C = 5726.569057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.270 1.270 13 S 2.785 3.215 14 O -0.998 6.998 15 O -0.980 6.980 16 N -1.126 6.126 17 C 0.186 3.814 18 C -0.179 4.179 19 S 0.101 5.899 20 C -0.218 4.218 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.099 4.099 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -5.476 9.838 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.195 1.195 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.963 6.963 16 N -0.885 5.885 17 C 0.059 3.941 18 C -0.298 4.298 19 S 0.366 5.634 20 C -0.354 4.354 21 C -0.162 4.162 22 C -0.107 4.107 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.110 -3.209 10.535 12.594 hybrid contribution 1.907 -2.016 -0.960 2.937 sum 8.017 -5.225 9.574 13.536 Atomic orbital electron populations 1.22199 0.97006 1.01310 1.02341 1.20961 0.93580 0.82827 1.02138 1.57721 1.78672 1.23074 1.23818 1.19225 0.97233 0.92565 0.78961 1.21513 1.07373 1.21394 1.07790 0.91712 1.24948 0.97043 0.94711 0.96989 1.69930 1.38042 1.24785 1.19540 0.86661 0.83588 0.78336 0.79881 1.20620 1.21120 1.19477 1.01761 0.72549 0.73733 0.72695 1.93549 1.69429 1.76596 1.58682 1.93578 1.85914 1.31210 1.85610 1.56089 1.24962 1.68390 1.39039 1.19899 0.80738 1.01237 0.92204 1.24480 1.01653 0.97773 1.05867 1.84388 1.11907 1.20782 1.46308 1.25572 1.02884 0.99048 1.07892 1.20030 0.98464 0.98269 0.99420 1.18937 0.94066 0.97273 1.00447 1.20588 1.03030 0.93247 0.98949 0.92689 0.92156 0.92414 0.90033 0.92010 0.94676 0.92774 0.92510 0.75968 0.89438 0.87042 0.82156 0.84535 0.90899 0.91803 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.20 6.01 -4.04 -0.02 2.18 16 3 N -0.99 -19.55 2.84 -115.66 -0.33 -19.88 16 4 C 0.24 5.72 5.48 -5.19 -0.03 5.69 16 5 C -0.54 -13.13 7.96 -34.44 -0.27 -13.40 16 6 H 0.06 1.48 6.73 -52.49 -0.35 1.13 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 9 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 S 2.78 54.17 6.11 -107.50 -0.66 53.51 16 14 O -1.00 -20.05 17.08 -57.17 -0.98 -21.03 16 15 O -0.98 -22.50 16.09 -57.17 -0.92 -23.42 16 16 N -1.13 -18.45 6.04 -11.66 -0.07 -18.52 16 17 C 0.19 3.22 6.02 -5.19 -0.03 3.19 16 18 C -0.18 -2.71 5.90 -36.00 -0.21 -2.93 16 19 S 0.10 1.36 23.33 -107.50 -2.51 -1.15 16 20 C -0.22 -2.49 11.23 29.04 0.33 -2.16 16 21 C -0.13 -1.55 9.98 -41.21 -0.41 -1.96 16 22 C -0.09 -1.28 5.80 -106.25 -0.62 -1.90 16 23 C -0.10 -1.25 9.60 36.01 0.35 -0.91 16 24 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 28 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.43 6.83 -51.93 -0.35 1.07 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.41 5.70 8.65 -34.47 -0.30 5.40 16 33 H 0.09 1.66 7.72 -51.93 -0.40 1.26 16 34 H 0.11 2.06 4.78 -51.93 -0.25 1.81 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 39 H 0.07 0.99 7.25 -51.93 -0.38 0.61 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -29.96 350.18 -10.47 -40.43 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.36 Total: 6.61 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.64 Total: -12.83 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.34 Total: -62.06 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.90 Total: -44.45 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -3.16 Total: 52.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.96 -10.47 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336928107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.785 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds