Wall clock time and date at job start Tue Mar 31 2020 12:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47420 * 2 1 4 4 C 1.46500 * 120.00197 * 274.03128 * 3 2 1 5 5 C 1.50702 * 109.46733 * 280.96759 * 4 3 2 6 6 H 1.07999 * 120.00489 * 3.21247 * 5 4 3 7 7 C 1.37884 * 119.99747 * 183.20863 * 5 4 3 8 8 N 1.31512 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99773 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47287 * 90.00323 * 9 7 5 11 11 H 1.48497 * 109.46972 * 209.99902 * 9 7 5 12 12 H 1.48493 * 109.47143 * 329.99904 * 9 7 5 13 13 S 1.65600 * 119.99893 * 94.02262 * 3 2 1 14 14 O 1.42096 * 106.40658 * 336.24233 * 13 3 2 15 15 O 1.42102 * 106.40443 * 203.31970 * 13 3 2 16 16 N 1.65605 * 107.21569 * 89.78194 * 13 3 2 17 17 C 1.46494 * 119.99908 * 65.59612 * 16 13 3 18 18 C 1.50705 * 109.47046 * 164.31472 * 17 16 13 19 19 S 1.75877 * 125.20654 * 270.02589 * 18 17 16 20 20 C 1.75888 * 90.97499 * 179.97438 * 19 18 17 21 21 C 1.33393 * 109.58787 * 359.97438 * 20 19 18 22 22 C 1.33395 * 125.20287 * 89.98428 * 18 17 16 23 23 C 1.50707 * 122.53833 * 0.05527 * 22 18 17 24 24 H 1.08993 * 109.47003 * 305.05294 * 1 2 3 25 25 H 1.08997 * 109.46790 * 65.05070 * 1 2 3 26 26 H 1.08995 * 109.47108 * 185.05085 * 1 2 3 27 27 H 1.09004 * 109.47298 * 239.99808 * 2 1 3 28 28 H 1.09001 * 109.47023 * 119.99939 * 2 1 3 29 29 H 1.08995 * 109.47084 * 40.96718 * 4 3 2 30 30 H 1.09002 * 109.47105 * 160.97003 * 4 3 2 31 31 H 0.97003 * 119.99811 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99644 * 245.59669 * 16 13 3 33 33 H 1.09001 * 109.47373 * 44.31909 * 17 16 13 34 34 H 1.08999 * 109.47139 * 284.31536 * 17 16 13 35 35 H 1.07996 * 125.20413 * 179.97438 * 20 19 18 36 36 H 1.08003 * 122.53636 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46598 * 89.99904 * 23 22 18 38 38 H 1.08996 * 109.47179 * 210.00290 * 23 22 18 39 39 H 1.09001 * 109.46897 * 330.00372 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1785 2.1015 -1.2656 5 6 3.4583 1.6671 -1.9323 6 1 4.0630 0.8911 -1.4867 7 6 3.8571 2.2602 -3.1114 8 7 3.1209 3.2054 -3.6539 9 14 5.4430 1.7212 -3.9383 10 1 5.1565 0.6117 -4.8828 11 1 6.0272 2.8660 -4.6821 12 1 6.4059 1.2575 -2.9074 13 16 2.3893 2.1282 1.4306 14 8 1.6437 1.4587 2.4381 15 8 2.2917 3.5255 1.1908 16 7 3.9852 1.8183 1.7461 17 6 5.0241 2.3586 0.8659 18 6 6.3612 2.2737 1.5561 19 16 7.0547 3.5238 2.5806 20 6 8.4864 2.5416 2.8614 21 6 8.3720 1.3863 2.2045 22 6 7.1995 1.2386 1.4839 23 6 6.8932 0.0021 0.6787 24 1 -0.3633 0.5902 0.8412 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3633 -1.0236 0.0905 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3349 1.8798 -1.9191 30 1 2.2158 3.1735 -1.0713 31 1 3.4013 3.6224 -4.4836 32 1 4.2319 1.2790 2.5137 33 1 4.7997 3.4001 0.6356 34 1 5.0546 1.7806 -0.0577 35 1 9.3291 2.8297 3.4722 36 1 9.1365 0.6239 2.2327 37 1 7.2707 0.1268 -0.3362 38 1 7.3724 -0.8607 1.1412 39 1 5.8148 -0.1540 0.6485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336928107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:13 Heat of formation + Delta-G solvation = -73.401559 kcal Electronic energy + Delta-G solvation = -23573.723352 eV Core-core repulsion = 20154.725424 eV Total energy + Delta-G solvation = -3418.997928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.52585 -38.33657 -37.67267 -36.90946 -36.12033 -34.64469 -31.77519 -31.50020 -29.39498 -28.47372 -25.68228 -24.91794 -23.39675 -23.25072 -20.43535 -19.43642 -18.92762 -18.51829 -18.45812 -17.89467 -17.17338 -16.59949 -16.23847 -15.87227 -15.41914 -14.99174 -14.83227 -14.67490 -14.57871 -13.91492 -13.77098 -13.64315 -13.59501 -13.32970 -13.19276 -13.06976 -13.03557 -12.84635 -12.78311 -12.69720 -12.64387 -12.42116 -12.23534 -12.05671 -11.70328 -11.63209 -11.55205 -10.54690 -10.45997 -9.81182 -9.58963 -9.27003 -8.12950 -6.25771 -0.38551 0.09709 0.71411 1.12500 1.45805 1.47698 1.56261 1.73832 2.08055 2.45551 2.61519 3.19826 3.41176 3.77047 4.00459 4.08674 4.16828 4.40736 4.46851 4.53576 4.62623 4.69883 4.75835 4.77847 4.86211 4.91849 5.02009 5.15709 5.17756 5.19035 5.31668 5.43815 5.55477 5.56235 5.63885 5.80763 5.90499 6.14911 6.17429 6.86335 7.43954 8.95329 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.006770 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.210980 B = 4135.100120 C = 5726.569057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.250 1.250 13 S 2.799 3.201 14 O -1.002 7.002 15 O -1.019 7.019 16 N -1.110 6.110 17 C 0.195 3.805 18 C -0.213 4.213 19 S 0.074 5.926 20 C -0.196 4.196 21 C -0.139 4.139 22 C -0.084 4.084 23 C -0.102 4.102 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.422 0.578 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.194 0.806 36 H 0.168 0.832 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.709 -7.861 11.037 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.834 5.834 4 C 0.134 3.866 5 C -0.572 4.572 6 H 0.099 0.901 7 C -0.185 4.185 8 N -0.569 5.569 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.173 1.173 13 S 2.807 3.193 14 O -0.986 6.986 15 O -1.003 7.003 16 N -0.872 5.872 17 C 0.068 3.932 18 C -0.332 4.332 19 S 0.339 5.661 20 C -0.331 4.331 21 C -0.169 4.169 22 C -0.098 4.098 23 C -0.161 4.161 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.257 0.743 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.564 -5.634 11.770 15.608 hybrid contribution 1.160 -1.306 -1.243 2.144 sum 9.725 -6.940 10.527 15.923 Atomic orbital electron populations 1.22195 0.96126 1.03144 1.01244 1.21260 0.94449 0.81136 1.03487 1.57602 1.79299 1.24238 1.22295 1.18778 0.96636 0.91090 0.80134 1.21791 1.07229 1.20904 1.07284 0.90135 1.25759 1.00107 0.94782 0.97896 1.70074 1.40103 1.26532 1.20147 0.85696 0.80215 0.77606 0.79179 1.20102 1.21994 1.17339 1.01167 0.73038 0.72761 0.72358 1.93533 1.70102 1.76378 1.58589 1.93529 1.86727 1.33912 1.86096 1.55719 1.23675 1.68345 1.39416 1.19615 0.82212 0.99226 0.92186 1.24252 1.01320 0.99440 1.08169 1.84489 1.13736 1.21412 1.46489 1.25970 1.02193 0.97931 1.07036 1.20310 0.98395 0.99206 0.98968 1.19247 0.94179 0.96800 0.99623 1.20652 1.02735 0.93890 0.98784 0.93783 0.93306 0.89068 0.89651 0.89589 0.96485 0.96240 0.92756 0.74322 0.92212 0.88364 0.78926 0.81454 0.91409 0.89016 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 10.24 71.98 0.74 -4.32 16 2 C 0.12 3.95 6.01 86.38 0.52 4.47 16 3 N -0.99 -39.59 2.84 -519.85 -1.48 -41.07 16 4 C 0.26 12.58 5.48 85.63 0.47 13.05 16 5 C -0.53 -26.09 7.96 25.60 0.20 -25.89 16 6 H 0.08 3.62 6.73 -2.91 -0.02 3.60 16 7 C 0.01 0.74 5.46 84.66 0.46 1.20 16 8 N -0.93 -52.80 13.29 21.45 0.28 -52.52 16 9 Si 0.95 40.21 29.54 68.60 2.03 42.24 16 10 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 13 S 2.80 110.30 6.11 -56.49 -0.34 109.95 16 14 O -1.00 -39.63 17.08 -128.00 -2.19 -41.82 16 15 O -1.02 -48.84 16.09 -128.00 -2.06 -50.90 16 16 N -1.11 -36.18 6.04 -190.79 -1.15 -37.33 16 17 C 0.19 6.80 6.02 85.64 0.52 7.31 16 18 C -0.21 -6.26 5.90 24.59 0.15 -6.12 16 19 S 0.07 1.91 23.33 -56.49 -1.32 0.59 16 20 C -0.20 -3.77 11.23 66.72 0.75 -3.02 16 21 C -0.14 -2.74 9.98 21.22 0.21 -2.53 16 22 C -0.08 -2.09 5.80 -20.92 -0.12 -2.21 16 23 C -0.10 -2.27 9.60 71.24 0.68 -1.59 16 24 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 28 H 0.09 2.37 7.65 -2.39 -0.02 2.36 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.02 1.09 6.83 -2.39 -0.02 1.08 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.42 11.34 8.65 -96.74 -0.84 10.51 16 33 H 0.06 2.39 7.72 -2.39 -0.02 2.37 16 34 H 0.10 3.64 4.78 -2.39 -0.01 3.63 16 35 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.52 8.13 -2.39 -0.02 1.50 16 39 H 0.06 1.58 7.25 -2.39 -0.02 1.57 16 Total: -1.00 -65.91 350.18 -1.43 -67.33 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.23 Total: 23.19 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.57 Total: -19.65 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -2.35 Total: -130.92 kcal Atomic # 8 Polarization: -88.48 SS G_CDS: -4.25 Total: -92.72 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 112.21 SS G_CDS: -1.66 Total: 110.54 kcal Total: -65.91 -1.43 -67.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336928107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.070 kcal (2) G-P(sol) polarization free energy of solvation -65.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds