Wall clock time and date at job start Tue Mar 31 2020 12:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28707 * 126.03849 * 2 1 4 4 N 1.28515 * 110.64377 * 179.97438 * 3 2 1 5 5 C 1.33329 * 109.43677 * 359.72450 * 4 3 2 6 6 C 1.37021 * 106.36771 * 0.42938 * 5 4 3 7 7 C 1.47203 * 127.18843 * 179.84581 * 6 5 4 8 8 O 1.21643 * 120.00163 * 353.00755 * 7 6 5 9 9 N 1.34773 * 120.00238 * 172.99918 * 7 6 5 10 10 C 1.40047 * 120.00308 * 183.60544 * 9 7 6 11 11 C 1.38675 * 120.10043 * 326.96823 * 10 9 7 12 12 C 1.38251 * 120.00348 * 180.29564 * 11 10 9 13 13 C 1.38300 * 120.21192 * 359.45421 * 12 11 10 14 14 C 1.38203 * 120.20426 * 0.54821 * 13 12 11 15 15 C 1.38772 * 119.99038 * 359.72888 * 14 13 12 16 16 S 1.76208 * 120.10604 * 180.02562 * 15 14 13 17 17 C 1.81407 * 102.99753 * 359.97438 * 16 15 14 18 18 C 1.50696 * 109.46833 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00222 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99827 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47340 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47164 * 120.00082 * 22 20 18 25 25 H 1.48505 * 109.47036 * 239.99915 * 22 20 18 26 26 H 1.08991 * 109.47268 * 260.84694 * 1 2 3 27 27 H 1.09003 * 109.46385 * 20.84552 * 1 2 3 28 28 H 1.08996 * 109.47126 * 140.83818 * 1 2 3 29 29 H 1.08004 * 126.80968 * 180.29562 * 5 4 3 30 30 H 0.97001 * 119.99565 * 3.60837 * 9 7 6 31 31 H 1.07996 * 119.99716 * 0.02751 * 11 10 9 32 32 H 1.08006 * 119.88985 * 179.70457 * 12 11 10 33 33 H 1.08000 * 119.90029 * 180.27684 * 13 12 11 34 34 H 1.08000 * 120.00027 * 179.74303 * 14 13 12 35 35 H 1.08998 * 109.46541 * 299.99841 * 17 16 15 36 36 H 1.08997 * 109.46955 * 59.99535 * 17 16 15 37 37 H 0.97005 * 119.99992 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0407 0.0000 4 7 3.4613 0.6996 0.0005 5 6 3.5553 -0.6304 0.0070 6 6 2.2711 -1.1082 0.0006 7 6 1.8462 -2.5176 0.0008 8 8 2.6725 -3.4020 -0.1211 9 7 0.5418 -2.8282 0.1363 10 6 0.1455 -4.1693 0.2124 11 6 0.8452 -5.1420 -0.4856 12 6 0.4485 -6.4644 -0.4140 13 6 -0.6387 -6.8237 0.3616 14 6 -1.3424 -5.8615 1.0609 15 6 -0.9551 -4.5308 0.9904 16 16 -1.8496 -3.3015 1.8813 17 6 -3.1478 -4.2611 2.7088 18 6 -4.0132 -3.3360 3.5250 19 1 -3.8030 -2.2768 3.5444 20 6 -5.0733 -3.8418 4.2471 21 7 -5.3295 -5.1314 4.2230 22 14 -6.1456 -2.6951 5.2594 23 1 -5.6503 -1.3021 5.1196 24 1 -7.5476 -2.7733 4.7764 25 1 -6.0909 -3.0984 6.6876 26 1 -0.3633 -0.1635 1.0145 27 1 -0.3632 0.9605 -0.3657 28 1 -0.3633 -0.7968 -0.6490 29 1 4.4635 -1.2149 0.0135 30 1 -0.1225 -2.1228 0.1811 31 1 1.6974 -4.8658 -1.0888 32 1 0.9919 -7.2198 -0.9622 33 1 -0.9415 -7.8589 0.4175 34 1 -2.1934 -6.1453 1.6622 35 1 -3.7598 -4.7649 1.9607 36 1 -2.6900 -5.0029 3.3632 37 1 -6.0751 -5.4874 4.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336988418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:38 Heat of formation + Delta-G solvation = 98.169834 kcal Electronic energy + Delta-G solvation = -23232.132881 eV Core-core repulsion = 19717.423646 eV Total energy + Delta-G solvation = -3514.709235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.60176 -40.51549 -38.27594 -35.71818 -34.45873 -33.38681 -31.83234 -30.93045 -29.44531 -28.74476 -28.55963 -24.73126 -23.50470 -22.93047 -22.69310 -21.91222 -20.78334 -18.49150 -17.89342 -17.16346 -16.91466 -16.74174 -16.39840 -15.38001 -15.26198 -15.14036 -14.68836 -14.40068 -14.25077 -13.75101 -13.55487 -13.28061 -13.18491 -13.04387 -12.50841 -12.38766 -12.37218 -11.92769 -11.44335 -11.40547 -11.06751 -10.87202 -10.65526 -10.51358 -10.31855 -10.08391 -9.81572 -9.77745 -9.41199 -9.34388 -8.76840 -8.27506 -6.81903 -6.39650 -4.46300 0.55326 1.39054 1.53216 1.78096 2.06852 2.16264 2.63776 2.83946 3.12341 3.20665 3.23764 3.40576 3.78602 3.90849 4.12914 4.18302 4.45115 4.59924 4.73088 4.92046 4.98443 5.09018 5.16819 5.18866 5.37783 5.56583 5.63563 5.73741 5.97414 5.99685 6.26702 6.33984 6.50720 6.69007 6.79303 6.82971 7.06141 7.08383 7.52232 7.68821 7.74257 8.04437 8.54597 9.18745 10.71386 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003958 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.375420 B = 7072.697960 C = 9086.254800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.271 5.271 3 N -0.051 5.051 4 N -0.275 5.275 5 C 0.035 3.965 6 C -0.075 4.075 7 C 0.597 3.403 8 O -0.500 6.500 9 N -0.660 5.660 10 C 0.137 3.863 11 C -0.105 4.105 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.116 4.116 15 C -0.088 4.088 16 S -0.177 6.177 17 C 0.080 3.920 18 C -0.522 4.522 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.887 5.887 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.205 0.795 30 H 0.408 0.592 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.898 3.275 -10.192 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.071 5.071 3 N -0.032 5.032 4 N -0.138 5.138 5 C -0.125 4.125 6 C -0.208 4.208 7 C 0.382 3.618 8 O -0.373 6.373 9 N -0.309 5.309 10 C 0.038 3.962 11 C -0.126 4.126 12 C -0.145 4.145 13 C -0.129 4.129 14 C -0.140 4.140 15 C -0.203 4.203 16 S 0.069 5.931 17 C -0.066 4.066 18 C -0.561 4.561 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.221 0.779 30 H 0.250 0.750 31 H 0.158 0.842 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.473 5.341 -10.056 15.471 hybrid contribution -1.462 -1.753 0.630 2.368 sum 9.011 3.588 -9.426 13.525 Atomic orbital electron populations 1.22728 0.71908 1.07218 1.06459 1.47829 1.09582 1.04192 1.45463 1.78252 0.96761 1.11505 1.16681 1.74990 1.08958 1.12375 1.17499 1.23862 0.96748 0.91184 1.00710 1.22177 0.92468 0.89081 1.17047 1.16750 0.82351 0.85614 0.77089 1.90843 1.51800 1.46585 1.48087 1.43755 1.07807 1.07742 1.71614 1.17116 0.96613 0.83100 0.99390 1.21141 1.00236 0.92308 0.98964 1.20977 0.97573 0.95563 1.00349 1.21102 0.95545 0.99241 0.97022 1.21261 1.01011 0.91044 1.00722 1.21860 0.99600 0.98351 1.00485 1.84911 1.35558 1.16808 1.55790 1.21393 0.91227 0.96811 0.97203 1.20616 1.12499 0.94043 1.28990 0.91304 1.24945 0.96940 0.95464 0.96181 1.69939 1.29569 1.11865 1.41039 0.86269 0.79898 0.80659 0.79695 1.19390 1.20557 1.20562 0.86972 0.85953 0.88091 0.77860 0.75019 0.84195 0.85814 0.85822 0.84476 0.93582 0.93573 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 9.81 59.85 0.59 1.02 16 2 N -0.27 -2.99 3.79 -64.12 -0.24 -3.23 16 3 N -0.05 -0.65 13.14 60.35 0.79 0.15 16 4 N -0.28 -3.66 12.35 30.48 0.38 -3.29 16 5 C 0.04 0.42 11.87 -17.34 -0.21 0.21 16 6 C -0.08 -0.91 6.98 -82.34 -0.57 -1.49 16 7 C 0.60 8.09 7.65 -12.62 -0.10 7.99 16 8 O -0.50 -7.74 14.27 5.24 0.07 -7.67 16 9 N -0.66 -8.90 4.94 -10.74 -0.05 -8.95 16 10 C 0.14 2.15 6.34 -83.46 -0.53 1.62 16 11 C -0.11 -1.53 8.70 -39.42 -0.34 -1.87 16 12 C -0.12 -1.62 10.04 -39.55 -0.40 -2.02 16 13 C -0.11 -1.53 10.04 -39.57 -0.40 -1.92 16 14 C -0.12 -1.95 9.36 -39.40 -0.37 -2.31 16 15 C -0.09 -1.52 6.12 -38.90 -0.24 -1.76 16 16 S -0.18 -3.34 20.69 -107.50 -2.22 -5.56 16 17 C 0.08 1.87 4.09 36.00 0.15 2.02 16 18 C -0.52 -13.36 9.13 -34.44 -0.31 -13.67 16 19 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 22 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.66 6.25 -51.93 -0.32 0.33 16 29 H 0.20 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.41 4.79 3.81 -40.82 -0.16 4.63 16 31 H 0.14 1.98 6.09 -52.49 -0.32 1.66 16 32 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.14 2.46 5.88 -52.49 -0.31 2.15 16 35 H 0.05 1.12 7.75 -51.92 -0.40 0.71 16 36 H 0.05 1.14 7.75 -51.93 -0.40 0.74 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -30.30 332.85 -6.94 -37.24 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.56 Total: 5.19 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.83 Total: -10.48 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 1.61 Total: -38.60 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.07 Total: -7.67 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.22 Total: -5.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.30 -6.94 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336988418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.408 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds