Wall clock time and date at job start Tue Mar 31 2020 12:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28707 * 126.03849 * 2 1 4 4 N 1.28515 * 110.64377 * 179.97438 * 3 2 1 5 5 C 1.33329 * 109.43677 * 359.72450 * 4 3 2 6 6 C 1.37021 * 106.36771 * 0.42938 * 5 4 3 7 7 C 1.47203 * 127.18843 * 179.84581 * 6 5 4 8 8 O 1.21643 * 120.00163 * 353.00755 * 7 6 5 9 9 N 1.34773 * 120.00238 * 172.99918 * 7 6 5 10 10 C 1.40047 * 120.00308 * 183.60544 * 9 7 6 11 11 C 1.38675 * 120.10043 * 326.96823 * 10 9 7 12 12 C 1.38251 * 120.00348 * 180.29564 * 11 10 9 13 13 C 1.38300 * 120.21192 * 359.45421 * 12 11 10 14 14 C 1.38203 * 120.20426 * 0.54821 * 13 12 11 15 15 C 1.38772 * 119.99038 * 359.72888 * 14 13 12 16 16 S 1.76208 * 120.10604 * 180.02562 * 15 14 13 17 17 C 1.81407 * 102.99753 * 359.97438 * 16 15 14 18 18 C 1.50696 * 109.46833 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00222 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99827 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47340 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47164 * 120.00082 * 22 20 18 25 25 H 1.48505 * 109.47036 * 239.99915 * 22 20 18 26 26 H 1.08991 * 109.47268 * 260.84694 * 1 2 3 27 27 H 1.09003 * 109.46385 * 20.84552 * 1 2 3 28 28 H 1.08996 * 109.47126 * 140.83818 * 1 2 3 29 29 H 1.08004 * 126.80968 * 180.29562 * 5 4 3 30 30 H 0.97001 * 119.99565 * 3.60837 * 9 7 6 31 31 H 1.07996 * 119.99716 * 0.02751 * 11 10 9 32 32 H 1.08006 * 119.88985 * 179.70457 * 12 11 10 33 33 H 1.08000 * 119.90029 * 180.27684 * 13 12 11 34 34 H 1.08000 * 120.00027 * 179.74303 * 14 13 12 35 35 H 1.08998 * 109.46541 * 299.99841 * 17 16 15 36 36 H 1.08997 * 109.46955 * 59.99535 * 17 16 15 37 37 H 0.97005 * 119.99992 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0407 0.0000 4 7 3.4613 0.6996 0.0005 5 6 3.5553 -0.6304 0.0070 6 6 2.2711 -1.1082 0.0006 7 6 1.8462 -2.5176 0.0008 8 8 2.6725 -3.4020 -0.1211 9 7 0.5418 -2.8282 0.1363 10 6 0.1455 -4.1693 0.2124 11 6 0.8452 -5.1420 -0.4856 12 6 0.4485 -6.4644 -0.4140 13 6 -0.6387 -6.8237 0.3616 14 6 -1.3424 -5.8615 1.0609 15 6 -0.9551 -4.5308 0.9904 16 16 -1.8496 -3.3015 1.8813 17 6 -3.1478 -4.2611 2.7088 18 6 -4.0132 -3.3360 3.5250 19 1 -3.8030 -2.2768 3.5444 20 6 -5.0733 -3.8418 4.2471 21 7 -5.3295 -5.1314 4.2230 22 14 -6.1456 -2.6951 5.2594 23 1 -5.6503 -1.3021 5.1196 24 1 -7.5476 -2.7733 4.7764 25 1 -6.0909 -3.0984 6.6876 26 1 -0.3633 -0.1635 1.0145 27 1 -0.3632 0.9605 -0.3657 28 1 -0.3633 -0.7968 -0.6490 29 1 4.4635 -1.2149 0.0135 30 1 -0.1225 -2.1228 0.1811 31 1 1.6974 -4.8658 -1.0888 32 1 0.9919 -7.2198 -0.9622 33 1 -0.9415 -7.8589 0.4175 34 1 -2.1934 -6.1453 1.6622 35 1 -3.7598 -4.7649 1.9607 36 1 -2.6900 -5.0029 3.3632 37 1 -6.0751 -5.4874 4.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336988418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:37 Heat of formation + Delta-G solvation = 79.856461 kcal Electronic energy + Delta-G solvation = -23232.927008 eV Core-core repulsion = 19717.423646 eV Total energy + Delta-G solvation = -3515.503362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.52742 -41.64493 -39.44607 -36.70752 -35.50611 -35.29260 -32.81932 -32.18335 -30.73567 -30.47985 -29.32008 -25.86216 -25.26176 -24.13865 -23.60015 -23.08342 -21.85504 -19.62323 -19.05046 -18.41544 -18.07780 -17.95140 -17.71595 -16.83491 -16.44144 -16.35263 -15.95799 -15.49060 -15.33707 -14.84131 -14.76022 -14.69670 -14.45808 -14.27050 -13.97579 -13.81936 -13.33932 -13.14260 -12.81015 -12.77847 -12.56013 -12.34575 -11.97519 -11.68602 -11.63154 -11.39662 -11.27272 -11.03928 -10.87383 -10.73757 -10.55640 -9.46364 -8.36820 -8.27164 -6.50736 -0.42894 0.21307 0.32986 0.70145 0.97498 1.10173 1.40001 1.41892 1.54081 1.55716 1.75571 1.80420 2.34420 2.70967 2.90346 2.99526 3.33889 3.61773 3.84004 3.84375 3.97763 4.12999 4.25957 4.30478 4.42182 4.43751 4.46781 4.79834 4.85640 4.87512 4.89749 5.06315 5.14651 5.18798 5.36172 5.51029 5.54027 5.80476 5.93181 5.98752 6.56746 6.60346 7.10594 7.18598 8.75256 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003958 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.375420 B = 7072.697960 C = 9086.254800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.260 5.260 3 N -0.061 5.061 4 N -0.298 5.298 5 C 0.040 3.960 6 C -0.086 4.086 7 C 0.604 3.396 8 O -0.519 6.519 9 N -0.657 5.657 10 C 0.137 3.863 11 C -0.111 4.111 12 C -0.106 4.106 13 C -0.107 4.107 14 C -0.133 4.133 15 C -0.114 4.114 16 S -0.153 6.153 17 C 0.081 3.919 18 C -0.539 4.539 19 H 0.070 0.930 20 C 0.020 3.980 21 N -0.921 5.921 22 Si 0.974 3.026 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.277 1.277 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.226 0.774 30 H 0.415 0.585 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 3.658 -11.020 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.061 5.061 3 N -0.042 5.042 4 N -0.160 5.160 5 C -0.121 4.121 6 C -0.219 4.219 7 C 0.390 3.610 8 O -0.394 6.394 9 N -0.307 5.307 10 C 0.037 3.963 11 C -0.132 4.132 12 C -0.127 4.127 13 C -0.127 4.127 14 C -0.157 4.157 15 C -0.229 4.229 16 S 0.092 5.908 17 C -0.066 4.066 18 C -0.578 4.578 19 H 0.088 0.912 20 C -0.182 4.182 21 N -0.560 5.560 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.203 1.203 26 H 0.134 0.866 27 H 0.167 0.833 28 H 0.129 0.871 29 H 0.242 0.758 30 H 0.258 0.742 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.133 0.867 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.160 5.743 -10.900 16.624 hybrid contribution -1.586 -1.946 0.786 2.630 sum 9.575 3.797 -10.114 14.436 Atomic orbital electron populations 1.23097 0.70076 1.09217 1.07101 1.48069 1.10571 1.03453 1.43965 1.78205 0.96967 1.11995 1.17047 1.74981 1.09348 1.13124 1.18541 1.24278 0.97504 0.90860 0.99473 1.22032 0.92894 0.88692 1.18285 1.16804 0.81953 0.85928 0.76340 1.90824 1.52202 1.47285 1.49042 1.43759 1.08155 1.07299 1.71471 1.17226 0.95946 0.84254 0.98865 1.21385 1.00257 0.92748 0.98814 1.21412 0.96550 0.95840 0.98915 1.21390 0.95252 0.99931 0.96117 1.21249 1.01168 0.91771 1.01549 1.21855 1.00830 0.98169 1.02013 1.84451 1.34127 1.16160 1.56058 1.21021 0.92434 0.96596 0.96538 1.20972 1.13084 0.94388 1.29344 0.91184 1.25848 0.98264 0.96883 0.97223 1.70048 1.30290 1.13612 1.42004 0.85258 0.78127 0.78929 0.77942 1.18486 1.19929 1.20274 0.86632 0.83314 0.87120 0.75800 0.74220 0.83394 0.82050 0.83158 0.86714 0.95633 0.96131 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.81 127.77 1.25 1.84 16 2 N -0.26 -5.36 3.79 -356.79 -1.35 -6.71 16 3 N -0.06 -1.48 13.14 37.02 0.49 -0.99 16 4 N -0.30 -7.60 12.35 -57.48 -0.71 -8.31 16 5 C 0.04 0.88 11.87 84.18 1.00 1.88 16 6 C -0.09 -1.98 6.98 40.40 0.28 -1.70 16 7 C 0.60 15.49 7.65 86.60 0.66 16.16 16 8 O -0.52 -15.22 14.27 -4.17 -0.06 -15.28 16 9 N -0.66 -16.91 4.94 -306.14 -1.51 -18.42 16 10 C 0.14 4.12 6.34 38.25 0.24 4.36 16 11 C -0.11 -2.97 8.70 22.38 0.19 -2.78 16 12 C -0.11 -2.48 10.04 22.29 0.22 -2.25 16 13 C -0.11 -2.81 10.04 22.28 0.22 -2.59 16 14 C -0.13 -4.51 9.36 22.39 0.21 -4.30 16 15 C -0.11 -3.94 6.12 22.71 0.14 -3.80 16 16 S -0.15 -5.85 20.69 -56.49 -1.17 -7.02 16 17 C 0.08 3.96 4.09 71.23 0.29 4.26 16 18 C -0.54 -28.15 9.13 25.60 0.23 -27.92 16 19 H 0.07 3.55 7.71 -2.91 -0.02 3.53 16 20 C 0.02 1.03 5.46 84.66 0.46 1.49 16 21 N -0.92 -51.15 13.29 21.45 0.28 -50.87 16 22 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 26 H 0.12 1.51 8.08 -2.39 -0.02 1.49 16 27 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 1.26 6.25 -2.39 -0.01 1.24 16 29 H 0.23 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.41 9.25 3.81 -92.71 -0.35 8.90 16 31 H 0.15 3.80 6.09 -2.91 -0.02 3.79 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.11 4.37 5.88 -2.91 -0.02 4.35 16 35 H 0.03 1.31 7.75 -2.39 -0.02 1.29 16 36 H 0.02 1.08 7.75 -2.39 -0.02 1.06 16 37 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -65.78 332.85 4.19 -61.60 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.78 Total: 18.53 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.42 Total: -15.35 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -2.80 Total: -85.31 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.06 Total: -15.28 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -1.17 Total: -7.02 kcal Total: -65.78 4.19 -61.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336988418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.452 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds