Wall clock time and date at job start Tue Mar 31 2020 11:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47545 * 2 1 4 4 N 1.46495 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.36793 * 120.00134 * 270.00001 * 4 3 2 6 6 H 1.07998 * 120.00032 * 23.45767 * 5 4 3 7 7 C 1.39097 * 119.99885 * 203.45938 * 5 4 3 8 8 N 1.31336 * 120.00338 * 10.86327 * 7 5 4 9 9 Si 1.86802 * 119.99606 * 190.86453 * 7 5 4 10 10 H 1.48497 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46647 * 120.00023 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99663 * 9 7 5 13 13 C 1.34776 * 120.00076 * 90.00442 * 4 3 2 14 14 O 1.21653 * 119.99950 * 242.11309 * 13 4 3 15 15 C 1.47300 * 120.00209 * 62.10459 * 13 4 3 16 16 C 1.39022 * 120.69760 * 24.82075 * 15 13 4 17 17 C 1.38748 * 120.47236 * 180.02562 * 16 15 13 18 18 C 1.36237 * 121.90303 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.64316 * 180.27850 * 18 17 16 20 20 C 1.40790 * 120.71994 * 359.97438 * 18 17 16 21 21 N 1.33651 * 121.11888 * 180.02562 * 20 18 17 22 22 C 1.31096 * 121.31559 * 179.97438 * 21 20 18 23 23 C 1.39310 * 121.76180 * 0.02562 * 22 21 20 24 24 C 1.36766 * 119.83329 * 359.97438 * 23 22 21 25 25 C 1.40295 * 118.09592 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47707 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47021 * 299.99846 * 1 2 3 28 28 H 1.09000 * 109.47493 * 59.99538 * 1 2 3 29 29 H 1.08997 * 109.46963 * 239.99479 * 2 1 3 30 30 H 1.09002 * 109.46987 * 120.00562 * 2 1 3 31 31 H 1.09004 * 109.46836 * 60.00041 * 3 2 1 32 32 H 1.08999 * 109.46711 * 300.00331 * 3 2 1 33 33 H 0.96992 * 120.00265 * 184.87600 * 8 7 5 34 34 H 1.07999 * 119.76728 * 0.02562 * 16 15 13 35 35 H 1.08008 * 119.05145 * 180.02562 * 17 16 15 36 36 H 1.08003 * 119.11968 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.08298 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.94863 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1885 1.4425 1.1856 6 1 3.7151 1.0703 2.0821 7 6 5.4932 1.9219 1.2358 8 7 5.9958 2.5671 0.2081 9 14 6.5307 1.6481 2.7649 10 1 5.7382 0.8993 3.7731 11 1 7.7418 0.8664 2.4078 12 1 6.9369 2.9604 3.3289 13 6 4.1794 1.4422 -1.1663 14 8 4.9103 0.5109 -1.4463 15 6 4.0313 2.5696 -2.1027 16 6 3.6540 3.8271 -1.6455 17 6 3.5154 4.8856 -2.5318 18 6 3.7391 4.7400 -3.8677 19 17 3.5554 6.1063 -4.9229 20 6 4.1239 3.4952 -4.4011 21 7 4.3460 3.3436 -5.7103 22 6 4.7049 2.1864 -6.2110 23 6 4.8721 1.0602 -5.4083 24 6 4.6604 1.1482 -4.0600 25 6 4.2765 2.3896 -3.5311 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 6.9267 2.8395 0.2145 34 1 3.4675 3.9812 -0.5930 35 1 3.2217 5.8529 -2.1516 36 1 4.8747 2.1038 -7.2744 37 1 5.1689 0.1202 -5.8495 38 1 4.7845 0.2865 -3.4209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337866214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:52 Heat of formation + Delta-G solvation = 25.929469 kcal Electronic energy + Delta-G solvation = -24499.485246 eV Core-core repulsion = 20947.306977 eV Total energy + Delta-G solvation = -3552.178269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.39704 -38.57836 -36.79228 -35.70750 -35.23844 -33.13143 -32.61561 -31.17061 -30.21066 -29.43650 -25.97587 -25.01062 -23.86452 -23.13095 -22.29762 -21.06569 -19.59496 -18.12036 -17.07635 -16.60366 -16.43101 -15.47760 -15.02457 -14.71562 -14.49993 -14.26551 -14.20850 -13.76983 -13.58696 -13.19606 -12.87038 -12.70049 -12.15593 -12.08648 -11.93996 -11.80002 -11.56528 -11.30816 -11.16367 -11.02871 -10.94088 -10.65751 -10.59078 -10.46906 -10.31708 -10.14927 -9.85876 -9.44560 -9.16564 -8.52038 -8.48036 -7.63988 -7.51475 -6.34010 -3.78658 0.57127 1.16822 2.13772 2.44755 3.06397 3.21886 3.26818 3.29434 3.87622 4.13847 4.45062 4.50794 4.66662 5.03523 5.11039 5.19426 5.26999 5.33744 5.44238 5.52850 5.56152 5.68021 5.75371 5.85963 5.92352 5.96631 6.19843 6.21633 6.29170 6.31629 6.35670 6.50300 6.60589 6.64950 6.81639 6.88855 6.93707 7.12895 7.41199 7.95156 8.14846 8.82521 9.10308 9.33803 9.81814 10.77408 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.005060 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.977839 B = 5532.341294 C = 5963.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.128 3.872 4 N -0.536 5.536 5 C -0.284 4.284 6 H 0.086 0.914 7 C 0.026 3.974 8 N -0.877 5.877 9 Si 0.923 3.077 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.614 3.386 14 O -0.525 6.525 15 C -0.053 4.053 16 C -0.061 4.061 17 C -0.088 4.088 18 C -0.025 4.025 19 Cl -0.066 7.066 20 C 0.128 3.872 21 N -0.473 5.473 22 C 0.123 3.877 23 C -0.190 4.190 24 C -0.040 4.040 25 C -0.073 4.073 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.272 0.728 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 1.267 -6.315 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.262 5.262 5 C -0.411 4.411 6 H 0.104 0.896 7 C -0.178 4.178 8 N -0.517 5.517 9 Si 0.750 3.250 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.406 3.594 14 O -0.402 6.402 15 C -0.059 4.059 16 C -0.080 4.080 17 C -0.108 4.108 18 C -0.052 4.052 19 Cl -0.037 7.037 20 C 0.006 3.994 21 N -0.181 5.181 22 C -0.048 4.048 23 C -0.210 4.210 24 C -0.065 4.065 25 C -0.076 4.076 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.667 1.826 -7.027 9.857 hybrid contribution 0.975 -0.538 1.181 1.623 sum -5.691 1.289 -5.846 8.260 Atomic orbital electron populations 1.21707 0.96371 1.01003 1.01367 1.21998 0.94528 0.99131 1.02393 1.21233 0.82570 0.94970 1.00845 1.42520 1.02610 1.76996 1.04076 1.19334 0.97798 1.37826 0.86167 0.89623 1.25196 0.98723 0.95196 0.98678 1.69290 1.14618 1.36290 1.31544 0.85929 0.80088 0.77820 0.81133 1.19630 1.20913 1.21000 1.17021 0.79187 0.83576 0.79621 1.90442 1.40059 1.35669 1.74069 1.21800 0.96304 0.96712 0.91067 1.21308 0.95808 0.90737 1.00158 1.20703 0.99112 1.00253 0.90751 1.20351 1.06380 0.87422 0.91094 1.98325 1.95909 1.42433 1.67037 1.18290 0.99656 0.91887 0.89611 1.68015 1.12588 1.25389 1.12084 1.22840 0.93930 0.87902 1.00157 1.21928 1.04083 1.00353 0.94683 1.22041 0.91171 0.97986 0.95314 1.19679 1.00712 0.93913 0.93282 0.93256 0.92873 0.93128 0.92606 0.91638 0.91658 0.93209 0.91638 0.83621 0.84770 0.82820 0.84835 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.14 -2.32 6.26 -26.74 -0.17 -2.49 16 3 C 0.13 2.34 5.37 -4.05 -0.02 2.32 16 4 N -0.54 -12.27 2.03 -116.08 -0.24 -12.50 16 5 C -0.28 -7.06 9.59 -15.02 -0.14 -7.20 16 6 H 0.09 2.04 7.86 -52.49 -0.41 1.63 16 7 C 0.03 0.65 5.23 -17.45 -0.09 0.56 16 8 N -0.88 -23.48 11.04 55.50 0.61 -22.87 16 9 Si 0.92 20.43 29.57 -169.99 -5.03 15.40 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.61 14.76 3.72 -12.58 -0.05 14.71 16 14 O -0.53 -14.04 14.67 5.23 0.08 -13.96 16 15 C -0.05 -1.15 5.22 -102.80 -0.54 -1.68 16 16 C -0.06 -1.18 9.10 -39.10 -0.36 -1.54 16 17 C -0.09 -1.49 9.62 -40.11 -0.39 -1.88 16 18 C -0.02 -0.44 6.32 -39.34 -0.25 -0.68 16 19 Cl -0.07 -1.04 28.47 -51.86 -1.48 -2.51 16 20 C 0.13 2.45 6.60 -84.86 -0.56 1.89 16 21 N -0.47 -8.38 9.79 -10.98 -0.11 -8.49 16 22 C 0.12 1.83 11.14 -17.47 -0.19 1.63 16 23 C -0.19 -2.86 10.04 -39.72 -0.40 -3.26 16 24 C -0.04 -0.74 9.31 -39.34 -0.37 -1.11 16 25 C -0.07 -1.48 5.90 -104.75 -0.62 -2.10 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 32 H 0.05 0.85 7.41 -51.93 -0.38 0.46 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.15 2.91 7.79 -52.49 -0.41 2.50 16 35 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.16 3.25 5.59 -52.49 -0.29 2.96 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -29.50 340.09 -9.23 -38.73 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.43 Total: 3.39 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.77 Total: -2.31 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.27 Total: -43.86 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.50 -9.23 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337866214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.658 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds