Wall clock time and date at job start Tue Mar 31 2020 11:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47545 * 2 1 4 4 N 1.46495 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.36793 * 120.00134 * 270.00001 * 4 3 2 6 6 H 1.07998 * 120.00032 * 23.45767 * 5 4 3 7 7 C 1.39097 * 119.99885 * 203.45938 * 5 4 3 8 8 N 1.31336 * 120.00338 * 10.86327 * 7 5 4 9 9 Si 1.86802 * 119.99606 * 190.86453 * 7 5 4 10 10 H 1.48497 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46647 * 120.00023 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99663 * 9 7 5 13 13 C 1.34776 * 120.00076 * 90.00442 * 4 3 2 14 14 O 1.21653 * 119.99950 * 242.11309 * 13 4 3 15 15 C 1.47300 * 120.00209 * 62.10459 * 13 4 3 16 16 C 1.39022 * 120.69760 * 24.82075 * 15 13 4 17 17 C 1.38748 * 120.47236 * 180.02562 * 16 15 13 18 18 C 1.36237 * 121.90303 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.64316 * 180.27850 * 18 17 16 20 20 C 1.40790 * 120.71994 * 359.97438 * 18 17 16 21 21 N 1.33651 * 121.11888 * 180.02562 * 20 18 17 22 22 C 1.31096 * 121.31559 * 179.97438 * 21 20 18 23 23 C 1.39310 * 121.76180 * 0.02562 * 22 21 20 24 24 C 1.36766 * 119.83329 * 359.97438 * 23 22 21 25 25 C 1.40295 * 118.09592 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47707 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47021 * 299.99846 * 1 2 3 28 28 H 1.09000 * 109.47493 * 59.99538 * 1 2 3 29 29 H 1.08997 * 109.46963 * 239.99479 * 2 1 3 30 30 H 1.09002 * 109.46987 * 120.00562 * 2 1 3 31 31 H 1.09004 * 109.46836 * 60.00041 * 3 2 1 32 32 H 1.08999 * 109.46711 * 300.00331 * 3 2 1 33 33 H 0.96992 * 120.00265 * 184.87600 * 8 7 5 34 34 H 1.07999 * 119.76728 * 0.02562 * 16 15 13 35 35 H 1.08008 * 119.05145 * 180.02562 * 17 16 15 36 36 H 1.08003 * 119.11968 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.08298 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.94863 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1885 1.4425 1.1856 6 1 3.7151 1.0703 2.0821 7 6 5.4932 1.9219 1.2358 8 7 5.9958 2.5671 0.2081 9 14 6.5307 1.6481 2.7649 10 1 5.7382 0.8993 3.7731 11 1 7.7418 0.8664 2.4078 12 1 6.9369 2.9604 3.3289 13 6 4.1794 1.4422 -1.1663 14 8 4.9103 0.5109 -1.4463 15 6 4.0313 2.5696 -2.1027 16 6 3.6540 3.8271 -1.6455 17 6 3.5154 4.8856 -2.5318 18 6 3.7391 4.7400 -3.8677 19 17 3.5554 6.1063 -4.9229 20 6 4.1239 3.4952 -4.4011 21 7 4.3460 3.3436 -5.7103 22 6 4.7049 2.1864 -6.2110 23 6 4.8721 1.0602 -5.4083 24 6 4.6604 1.1482 -4.0600 25 6 4.2765 2.3896 -3.5311 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 6.9267 2.8395 0.2145 34 1 3.4675 3.9812 -0.5930 35 1 3.2217 5.8529 -2.1516 36 1 4.8747 2.1038 -7.2744 37 1 5.1689 0.1202 -5.8495 38 1 4.7845 0.2865 -3.4209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337866214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:51 Heat of formation + Delta-G solvation = 10.836827 kcal Electronic energy + Delta-G solvation = -24500.139712 eV Core-core repulsion = 20947.306977 eV Total energy + Delta-G solvation = -3552.832735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82077 -40.26154 -38.16224 -37.09892 -36.91928 -34.75093 -34.02817 -32.82604 -31.57644 -30.91639 -27.56642 -26.60531 -25.27960 -24.51269 -23.83914 -22.44614 -21.25631 -19.62755 -18.58908 -18.01496 -17.98220 -17.17191 -16.68345 -16.35239 -15.83759 -15.80096 -15.59172 -15.35408 -15.02898 -14.53653 -14.19654 -14.09592 -13.66967 -13.47618 -13.47105 -13.41763 -12.98884 -12.87686 -12.62391 -12.60900 -12.43588 -12.24701 -12.11771 -11.96564 -11.80728 -11.55815 -11.22559 -10.99116 -10.91115 -10.23178 -9.84364 -9.32066 -9.10842 -8.23874 -5.72637 -0.85745 -0.19490 0.68759 1.06675 1.38530 1.45013 1.54428 1.65528 2.23997 2.39302 2.98309 3.05066 3.20180 3.22588 3.69598 3.82834 3.89007 4.05689 4.11403 4.18106 4.29212 4.38918 4.39670 4.51557 4.59285 4.69511 4.82293 4.83401 4.94396 5.07988 5.12959 5.18761 5.21347 5.31753 5.42515 5.44785 5.50016 5.54274 5.73794 6.07156 6.82518 6.94083 7.27807 7.56963 7.97996 8.85222 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.005060 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.977839 B = 5532.341294 C = 5963.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.127 3.873 4 N -0.552 5.552 5 C -0.293 4.293 6 H 0.091 0.909 7 C -0.024 4.024 8 N -0.906 5.906 9 Si 0.980 3.020 10 H -0.258 1.258 11 H -0.298 1.298 12 H -0.279 1.279 13 C 0.617 3.383 14 O -0.568 6.568 15 C -0.086 4.086 16 C -0.051 4.051 17 C -0.088 4.088 18 C -0.020 4.020 19 Cl -0.043 7.043 20 C 0.111 3.889 21 N -0.484 5.484 22 C 0.132 3.868 23 C -0.164 4.164 24 C -0.072 4.072 25 C -0.090 4.090 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.204 0.796 37 H 0.174 0.826 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 1.996 -7.898 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.003 3.997 4 N -0.279 5.279 5 C -0.421 4.421 6 H 0.108 0.892 7 C -0.223 4.223 8 N -0.548 5.548 9 Si 0.806 3.194 10 H -0.182 1.182 11 H -0.226 1.226 12 H -0.205 1.205 13 C 0.411 3.589 14 O -0.448 6.448 15 C -0.092 4.092 16 C -0.070 4.070 17 C -0.108 4.108 18 C -0.048 4.048 19 Cl -0.014 7.014 20 C -0.011 4.011 21 N -0.193 5.193 22 C -0.040 4.040 23 C -0.183 4.183 24 C -0.098 4.098 25 C -0.093 4.093 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.184 0.816 36 H 0.221 0.779 37 H 0.191 0.809 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.810 2.573 -8.598 11.897 hybrid contribution 1.271 -0.787 1.441 2.076 sum -6.540 1.785 -7.158 9.858 Atomic orbital electron populations 1.21639 0.92971 1.02346 1.02523 1.21916 0.97393 0.97437 1.00671 1.21424 0.80095 0.96329 1.01810 1.42705 1.04322 1.77519 1.03363 1.19590 0.98173 1.37278 0.87033 0.89152 1.25945 0.99857 0.95492 1.01036 1.69443 1.14097 1.38122 1.33154 0.85046 0.78049 0.77614 0.78688 1.18203 1.22552 1.20499 1.17493 0.77868 0.83428 0.80093 1.90401 1.41587 1.37416 1.75352 1.21640 0.99327 0.96505 0.91694 1.21278 0.94901 0.90782 1.00049 1.20885 0.98854 1.00764 0.90296 1.20536 1.04756 0.87851 0.91659 1.98330 1.95668 1.41006 1.66346 1.18463 1.00426 0.91985 0.90231 1.68107 1.13215 1.26830 1.11104 1.23668 0.91448 0.86613 1.02249 1.22362 1.00821 1.02223 0.92938 1.21979 0.93760 0.97047 0.97010 1.19827 1.01393 0.95130 0.92949 0.91853 0.91461 0.92191 0.94662 0.93031 0.90415 0.92301 0.92707 0.84637 0.81588 0.77892 0.80894 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.13 -4.50 6.26 30.59 0.19 -4.31 16 3 C 0.13 4.69 5.37 86.38 0.46 5.16 16 4 N -0.55 -26.24 2.03 -639.42 -1.30 -27.54 16 5 C -0.29 -15.00 9.59 84.13 0.81 -14.19 16 6 H 0.09 4.39 7.86 -2.91 -0.02 4.36 16 7 C -0.02 -1.26 5.23 84.97 0.44 -0.82 16 8 N -0.91 -50.55 11.04 21.69 0.24 -50.31 16 9 Si 0.98 43.09 29.57 68.60 2.03 45.12 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.62 31.14 3.72 86.63 0.32 31.46 16 14 O -0.57 -32.21 14.67 -4.20 -0.06 -32.27 16 15 C -0.09 -3.87 5.22 -18.68 -0.10 -3.96 16 16 C -0.05 -2.01 9.10 22.58 0.21 -1.81 16 17 C -0.09 -2.91 9.62 21.93 0.21 -2.70 16 18 C -0.02 -0.69 6.32 22.43 0.14 -0.54 16 19 Cl -0.04 -1.24 28.47 -2.72 -0.08 -1.32 16 20 C 0.11 4.15 6.60 40.30 0.27 4.41 16 21 N -0.48 -15.99 9.79 -188.64 -1.85 -17.84 16 22 C 0.13 3.44 11.14 85.06 0.95 4.38 16 23 C -0.16 -4.55 10.04 22.18 0.22 -4.33 16 24 C -0.07 -2.74 9.31 22.43 0.21 -2.54 16 25 C -0.09 -3.71 5.90 -19.95 -0.12 -3.83 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.64 8.04 -2.38 -0.02 2.62 16 32 H 0.06 2.04 7.41 -2.39 -0.02 2.03 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.14 5.58 7.79 -2.91 -0.02 5.56 16 35 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.14 5.92 5.59 -2.91 -0.02 5.90 16 Total: -1.00 -67.29 340.09 5.00 -62.30 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.08 Total: 18.03 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 4.93 Total: 3.84 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -2.91 Total: -95.69 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.06 Total: -32.27 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -67.29 5.00 -62.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337866214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.132 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds