Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46722 * 2 1 4 4 C 1.46501 * 120.00604 * 274.96681 * 3 2 1 5 5 C 1.50703 * 109.47013 * 270.00685 * 4 3 2 6 6 H 1.08000 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00062 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46975 * 89.99934 * 9 7 5 11 11 H 1.48494 * 109.47033 * 210.00083 * 9 7 5 12 12 H 1.48497 * 109.47143 * 329.99816 * 9 7 5 13 13 C 1.34784 * 119.99782 * 94.96834 * 3 2 1 14 14 O 1.21599 * 119.99723 * 185.55488 * 13 3 2 15 15 C 1.47466 * 119.99831 * 5.55667 * 13 3 2 16 16 C 1.38759 * 120.37153 * 55.09166 * 15 13 3 17 17 C 1.38877 * 120.55162 * 179.97438 * 16 15 13 18 18 C 1.36368 * 121.23032 * 0.06947 * 17 16 15 19 19 Cl 1.73604 * 119.91313 * 180.22568 * 18 17 16 20 20 C 1.40869 * 120.17599 * 359.95475 * 18 17 16 21 21 N 1.33651 * 120.94929 * 180.02562 * 20 18 17 22 22 C 1.31069 * 121.34476 * 179.97438 * 21 20 18 23 23 C 1.39333 * 121.70338 * 0.02562 * 22 21 20 24 24 C 1.36685 * 119.85775 * 359.97438 * 23 22 21 25 25 C 1.40461 * 118.16717 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.46840 * 59.99641 * 1 2 3 27 27 H 1.09000 * 109.46650 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47058 * 299.99582 * 1 2 3 29 29 H 1.08997 * 109.46653 * 240.00523 * 2 1 3 30 30 H 1.08995 * 109.47082 * 119.99894 * 2 1 3 31 31 H 1.09001 * 109.46678 * 29.99907 * 4 3 2 32 32 H 1.08994 * 109.47537 * 150.00027 * 4 3 2 33 33 H 0.96991 * 120.00056 * 180.02562 * 8 7 5 34 34 H 1.07996 * 119.72491 * 359.97438 * 16 15 13 35 35 H 1.08002 * 119.38238 * 180.02562 * 17 16 15 36 36 H 1.08006 * 119.15067 * 179.97438 * 22 21 20 37 37 H 1.07993 * 120.07005 * 180.02562 * 23 22 21 38 38 H 1.07992 * 120.91683 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1589 2.1086 -1.2639 5 6 3.5417 1.8861 -1.8204 6 1 4.2455 1.2654 -1.2858 7 6 3.9082 2.4750 -3.0119 8 7 3.0510 3.2305 -3.6631 9 14 5.6224 2.1999 -3.7013 10 1 5.6159 1.0035 -4.5810 11 1 6.0367 3.3898 -4.4871 12 1 6.5771 1.9876 -2.5840 13 6 2.3382 1.9829 1.1629 14 8 2.6465 3.1591 1.1742 15 6 2.3144 1.2147 2.4215 16 6 3.0503 0.0446 2.5433 17 6 3.0309 -0.6814 3.7269 18 6 2.2923 -0.2699 4.7969 19 17 2.2978 -1.2010 6.2621 20 6 1.5294 0.9117 4.7182 21 7 0.8004 1.3295 5.7575 22 6 0.0881 2.4279 5.6931 23 6 0.0546 3.2124 4.5420 24 6 0.7782 2.8403 3.4437 25 6 1.5394 1.6623 3.5190 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4179 1.7457 -1.9762 32 1 2.0044 3.1733 -1.0896 33 1 3.3087 3.6445 -4.5015 34 1 3.6430 -0.3043 1.7106 35 1 3.6112 -1.5893 3.8012 36 1 -0.4883 2.7325 6.5541 37 1 -0.5411 4.1128 4.5180 38 1 0.7650 3.4357 2.5428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338117742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = 16.027096 kcal Electronic energy + Delta-G solvation = -24036.544120 eV Core-core repulsion = 20483.936451 eV Total energy + Delta-G solvation = -3552.607668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14730 -39.13242 -37.32241 -36.28141 -35.48441 -33.37232 -32.81307 -30.83248 -30.27462 -30.18026 -27.20832 -24.73676 -23.94468 -23.67613 -23.02993 -21.85251 -19.13620 -18.32550 -17.27407 -17.19449 -16.45915 -16.20462 -15.75450 -15.03000 -14.75768 -14.68682 -14.38312 -14.07922 -13.65505 -13.39928 -13.34900 -12.97388 -12.62459 -12.57714 -12.35356 -12.11910 -11.78754 -11.72139 -11.40344 -11.24159 -10.97022 -10.95754 -10.76747 -10.58798 -10.36634 -10.21537 -9.87236 -9.71726 -9.13613 -8.99872 -8.51369 -8.22527 -7.80492 -6.12309 -4.17847 0.04191 0.61520 1.68173 1.97497 2.57787 3.23208 3.25368 3.32706 3.36275 3.67796 3.91769 4.00870 4.37226 4.51648 4.60585 4.69757 4.84554 4.85299 5.13325 5.14747 5.22598 5.29790 5.38060 5.55793 5.58955 5.72275 5.73632 5.88977 5.95157 6.01389 6.17185 6.17818 6.27966 6.43208 6.53703 6.94338 7.31940 7.39697 7.69537 7.83111 8.12641 8.21298 8.72104 8.89749 9.47627 10.95783 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.003786 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.222908 B = 7394.731785 C = 7975.445569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.583 5.583 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.548 3.452 14 O -0.529 6.529 15 C -0.076 4.076 16 C -0.083 4.083 17 C -0.091 4.091 18 C -0.008 4.008 19 Cl -0.049 7.049 20 C 0.130 3.870 21 N -0.468 5.468 22 C 0.136 3.864 23 C -0.175 4.175 24 C -0.041 4.041 25 C -0.064 4.064 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -7.776 15.817 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.314 5.314 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.333 3.667 14 O -0.407 6.407 15 C -0.080 4.080 16 C -0.102 4.102 17 C -0.111 4.111 18 C -0.036 4.036 19 Cl -0.020 7.020 20 C 0.008 3.992 21 N -0.175 5.175 22 C -0.036 4.036 23 C -0.195 4.195 24 C -0.066 4.066 25 C -0.067 4.067 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.074 -7.704 16.470 19.171 hybrid contribution 0.951 0.290 -1.166 1.532 sum -5.124 -7.414 15.304 17.760 Atomic orbital electron populations 1.22162 0.96502 1.01560 1.02255 1.21702 0.94030 0.84044 1.03202 1.48250 1.61802 1.13649 1.07695 1.19358 0.97072 0.93153 0.77758 1.21401 0.98431 1.30942 1.06159 0.92373 1.24924 0.97565 0.94777 0.96670 1.69925 1.35034 1.31873 1.16306 0.86491 0.84212 0.77723 0.78992 1.20566 1.21035 1.19848 1.17930 0.78912 0.86840 0.83009 1.90799 1.48280 1.15289 1.86342 1.20397 0.97481 0.95384 0.94758 1.21324 0.98317 0.92861 0.97702 1.20753 0.98270 1.00787 0.91286 1.20560 1.00145 0.93205 0.89644 1.98365 1.97411 1.71277 1.34912 1.18337 0.96839 0.94197 0.89858 1.68065 1.06758 1.14948 1.27757 1.23001 0.94008 0.89375 0.97265 1.21989 1.01324 1.01951 0.94194 1.21714 0.91571 0.93605 0.99752 1.18477 0.98581 0.96307 0.93320 0.91897 0.92043 0.93267 0.89732 0.90831 0.94633 0.93585 0.92609 0.83475 0.83689 0.82075 0.84090 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 2 C 0.09 1.46 5.95 -4.04 -0.02 1.43 16 3 N -0.58 -11.73 2.46 -176.31 -0.43 -12.17 16 4 C 0.25 6.10 5.23 -5.19 -0.03 6.08 16 5 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.55 11.06 6.40 -12.50 -0.08 10.98 16 14 O -0.53 -12.75 15.36 5.28 0.08 -12.67 16 15 C -0.08 -1.24 4.93 -104.66 -0.52 -1.75 16 16 C -0.08 -1.12 7.46 -39.15 -0.29 -1.41 16 17 C -0.09 -1.05 9.68 -40.02 -0.39 -1.44 16 18 C -0.01 -0.10 6.34 -39.26 -0.25 -0.35 16 19 Cl -0.05 -0.58 28.49 -51.86 -1.48 -2.06 16 20 C 0.13 1.89 6.60 -84.85 -0.56 1.33 16 21 N -0.47 -6.37 9.80 -10.97 -0.11 -6.48 16 22 C 0.14 1.48 11.15 -17.47 -0.19 1.29 16 23 C -0.17 -1.94 10.04 -39.74 -0.40 -2.34 16 24 C -0.04 -0.58 9.30 -39.31 -0.37 -0.95 16 25 C -0.06 -0.99 5.76 -106.54 -0.61 -1.60 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 30 H 0.07 0.98 4.43 -51.93 -0.23 0.75 16 31 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.29 7.35 -51.93 -0.38 0.91 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.15 1.84 7.56 -52.49 -0.40 1.44 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.15 2.35 6.53 -52.49 -0.34 2.01 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -32.18 340.93 -9.11 -41.29 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.27 Total: -0.54 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.75 Total: -3.70 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.20 Total: -43.63 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.18 -9.11 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338117742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.317 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds