Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46722 * 2 1 4 4 C 1.46501 * 120.00604 * 274.96681 * 3 2 1 5 5 C 1.50703 * 109.47013 * 270.00685 * 4 3 2 6 6 H 1.08000 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00062 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46975 * 89.99934 * 9 7 5 11 11 H 1.48494 * 109.47033 * 210.00083 * 9 7 5 12 12 H 1.48497 * 109.47143 * 329.99816 * 9 7 5 13 13 C 1.34784 * 119.99782 * 94.96834 * 3 2 1 14 14 O 1.21599 * 119.99723 * 185.55488 * 13 3 2 15 15 C 1.47466 * 119.99831 * 5.55667 * 13 3 2 16 16 C 1.38759 * 120.37153 * 55.09166 * 15 13 3 17 17 C 1.38877 * 120.55162 * 179.97438 * 16 15 13 18 18 C 1.36368 * 121.23032 * 0.06947 * 17 16 15 19 19 Cl 1.73604 * 119.91313 * 180.22568 * 18 17 16 20 20 C 1.40869 * 120.17599 * 359.95475 * 18 17 16 21 21 N 1.33651 * 120.94929 * 180.02562 * 20 18 17 22 22 C 1.31069 * 121.34476 * 179.97438 * 21 20 18 23 23 C 1.39333 * 121.70338 * 0.02562 * 22 21 20 24 24 C 1.36685 * 119.85775 * 359.97438 * 23 22 21 25 25 C 1.40461 * 118.16717 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.46840 * 59.99641 * 1 2 3 27 27 H 1.09000 * 109.46650 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47058 * 299.99582 * 1 2 3 29 29 H 1.08997 * 109.46653 * 240.00523 * 2 1 3 30 30 H 1.08995 * 109.47082 * 119.99894 * 2 1 3 31 31 H 1.09001 * 109.46678 * 29.99907 * 4 3 2 32 32 H 1.08994 * 109.47537 * 150.00027 * 4 3 2 33 33 H 0.96991 * 120.00056 * 180.02562 * 8 7 5 34 34 H 1.07996 * 119.72491 * 359.97438 * 16 15 13 35 35 H 1.08002 * 119.38238 * 180.02562 * 17 16 15 36 36 H 1.08006 * 119.15067 * 179.97438 * 22 21 20 37 37 H 1.07993 * 120.07005 * 180.02562 * 23 22 21 38 38 H 1.07992 * 120.91683 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1589 2.1086 -1.2639 5 6 3.5417 1.8861 -1.8204 6 1 4.2455 1.2654 -1.2858 7 6 3.9082 2.4750 -3.0119 8 7 3.0510 3.2305 -3.6631 9 14 5.6224 2.1999 -3.7013 10 1 5.6159 1.0035 -4.5810 11 1 6.0367 3.3898 -4.4871 12 1 6.5771 1.9876 -2.5840 13 6 2.3382 1.9829 1.1629 14 8 2.6465 3.1591 1.1742 15 6 2.3144 1.2147 2.4215 16 6 3.0503 0.0446 2.5433 17 6 3.0309 -0.6814 3.7269 18 6 2.2923 -0.2699 4.7969 19 17 2.2978 -1.2010 6.2621 20 6 1.5294 0.9117 4.7182 21 7 0.8004 1.3295 5.7575 22 6 0.0881 2.4279 5.6931 23 6 0.0546 3.2124 4.5420 24 6 0.7782 2.8403 3.4437 25 6 1.5394 1.6623 3.5190 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4179 1.7457 -1.9762 32 1 2.0044 3.1733 -1.0896 33 1 3.3087 3.6445 -4.5015 34 1 3.6430 -0.3043 1.7106 35 1 3.6112 -1.5893 3.8012 36 1 -0.4883 2.7325 6.5541 37 1 -0.5411 4.1128 4.5180 38 1 0.7650 3.4357 2.5428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338117742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = -2.708573 kcal Electronic energy + Delta-G solvation = -24037.356559 eV Core-core repulsion = 20483.936451 eV Total energy + Delta-G solvation = -3553.420108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25054 -40.57558 -38.34634 -37.32657 -37.09337 -34.92750 -34.33454 -31.82419 -31.72070 -31.38919 -29.02962 -25.97623 -25.29296 -24.85293 -24.40054 -23.24830 -20.43709 -19.49102 -18.64066 -18.33899 -18.23008 -17.57398 -17.32586 -16.37020 -16.03331 -15.92997 -15.66281 -15.32907 -14.94312 -14.72971 -14.42812 -14.41196 -13.91070 -13.71935 -13.65955 -13.51629 -13.28342 -13.16834 -12.72016 -12.70949 -12.60762 -12.41377 -12.19625 -11.96330 -11.85531 -11.73773 -11.35711 -11.08536 -10.64440 -10.52594 -9.97303 -9.59306 -9.24555 -8.23423 -6.38218 -1.01635 -0.36745 0.59822 0.98417 1.37731 1.40558 1.47676 1.51597 1.84177 2.16544 2.40811 2.87646 3.07033 3.09266 3.36012 3.54014 3.65988 3.76894 3.90531 4.07873 4.16732 4.26918 4.33756 4.40165 4.51877 4.58258 4.79212 4.81115 4.88656 4.90816 4.96232 5.00877 5.17019 5.18545 5.28723 5.30583 5.53076 5.58125 5.78908 6.02989 6.58845 6.70703 6.72877 7.16596 7.35099 8.84059 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.003786 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.222908 B = 7394.731785 C = 7975.445569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 N -0.587 5.587 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.548 3.452 14 O -0.583 6.583 15 C -0.103 4.103 16 C -0.070 4.070 17 C -0.081 4.081 18 C -0.008 4.008 19 Cl -0.035 7.035 20 C 0.115 3.885 21 N -0.481 5.481 22 C 0.142 3.858 23 C -0.153 4.153 24 C -0.075 4.075 25 C -0.074 4.074 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.001 0.999 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.206 0.794 37 H 0.174 0.826 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -9.962 17.839 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.032 4.032 3 N -0.317 5.317 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.336 3.664 14 O -0.464 6.464 15 C -0.107 4.107 16 C -0.089 4.089 17 C -0.101 4.101 18 C -0.036 4.036 19 Cl -0.006 7.006 20 C -0.007 4.007 21 N -0.189 5.189 22 C -0.030 4.030 23 C -0.172 4.172 24 C -0.101 4.101 25 C -0.077 4.077 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.044 0.956 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.199 0.801 36 H 0.222 0.778 37 H 0.191 0.809 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.854 -9.944 18.506 21.809 hybrid contribution 0.775 0.999 -1.662 2.088 sum -5.080 -8.945 16.844 19.737 Atomic orbital electron populations 1.22101 0.94981 1.03441 1.01186 1.21989 0.95293 0.81517 1.04436 1.48206 1.61963 1.15209 1.06290 1.18800 0.96181 0.91211 0.79719 1.21695 0.99218 1.30932 1.06440 0.92362 1.25833 1.01672 0.94356 0.97037 1.70049 1.37111 1.32764 1.16780 0.85420 0.79020 0.78105 0.78323 1.18772 1.20882 1.19583 1.18515 0.77321 0.86434 0.84148 1.90748 1.50538 1.17843 1.87302 1.20021 1.00686 0.96837 0.93150 1.21484 0.96968 0.91605 0.98818 1.21011 0.97848 1.01413 0.89803 1.20763 0.99561 0.92833 0.90440 1.98371 1.97307 1.70711 1.34164 1.18508 0.97689 0.94822 0.89662 1.68147 1.07292 1.16104 1.27367 1.23720 0.93010 0.88097 0.98205 1.22365 0.99504 1.02455 0.92877 1.21652 0.93929 0.94167 1.00339 1.18547 0.98836 0.96837 0.93510 0.93687 0.88574 0.93610 0.89850 0.88070 0.95556 0.98092 0.92388 0.82468 0.80082 0.77752 0.80859 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.09 2.77 5.95 86.38 0.51 3.28 16 3 N -0.59 -24.72 2.46 -829.98 -2.04 -26.76 16 4 C 0.26 13.84 5.23 85.63 0.45 14.29 16 5 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 6 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 9 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.55 23.34 6.40 86.67 0.55 23.90 16 14 O -0.58 -30.30 15.36 -4.03 -0.06 -30.36 16 15 C -0.10 -3.39 4.93 -19.89 -0.10 -3.49 16 16 C -0.07 -1.79 7.46 22.55 0.17 -1.62 16 17 C -0.08 -1.66 9.68 21.99 0.21 -1.45 16 18 C -0.01 -0.19 6.34 22.48 0.14 -0.05 16 19 Cl -0.03 -0.73 28.49 -2.72 -0.08 -0.81 16 20 C 0.11 3.17 6.60 40.31 0.27 3.44 16 21 N -0.48 -12.00 9.80 -188.61 -1.85 -13.85 16 22 C 0.14 2.69 11.15 85.07 0.95 3.64 16 23 C -0.15 -3.16 10.04 22.17 0.22 -2.93 16 24 C -0.07 -2.21 9.30 22.45 0.21 -2.01 16 25 C -0.07 -2.30 5.76 -21.10 -0.12 -2.42 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 30 H 0.10 2.56 4.43 -2.39 -0.01 2.55 16 31 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 32 H 0.00 0.06 7.35 -2.39 -0.02 0.04 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.16 3.64 7.56 -2.91 -0.02 3.62 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.12 4.26 6.53 -2.91 -0.02 4.25 16 Total: -1.00 -74.20 340.93 4.28 -69.92 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.09 Total: 9.04 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.90 Total: 1.81 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.60 Total: -95.48 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -74.20 4.28 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338117742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.214 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds