Wall clock time and date at job start Tue Mar 31 2020 12:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47662 * 2 1 4 4 C 1.50697 * 109.47089 * 239.99661 * 2 1 3 5 5 H 1.08000 * 120.00291 * 240.00301 * 4 2 1 6 6 C 1.37880 * 119.99996 * 60.00535 * 4 2 1 7 7 N 1.31509 * 119.99936 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47270 * 89.99944 * 8 6 4 10 10 H 1.48502 * 109.46914 * 209.99578 * 8 6 4 11 11 H 1.48507 * 109.47364 * 329.99708 * 8 6 4 12 12 N 1.46507 * 109.46992 * 120.00031 * 2 1 3 13 13 C 1.34774 * 119.99765 * 274.99753 * 12 2 1 14 14 O 1.21932 * 119.99980 * 359.97438 * 13 12 2 15 15 N 1.33310 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.33954 * 119.99872 * 180.02562 * 15 13 12 17 17 N 1.33259 * 127.26685 * 179.97438 * 16 15 13 18 18 C 1.29853 * 117.03465 * 179.97438 * 17 16 15 19 19 C 1.47869 * 121.43491 * 180.02562 * 18 17 16 20 20 C 1.39564 * 120.14779 * 179.70289 * 19 18 17 21 21 C 1.37964 * 119.85375 * 179.72372 * 20 19 18 22 22 C 1.38359 * 120.14164 * 0.55289 * 21 20 19 23 23 C 1.38359 * 120.29185 * 359.72248 * 22 21 20 24 24 C 1.37960 * 120.13983 * 359.97438 * 23 22 21 25 25 N 1.34479 * 117.13922 * 359.97438 * 18 17 16 26 26 H 0.97001 * 127.18549 * 179.97438 * 25 18 17 27 27 S 1.69945 * 105.62148 * 359.73543 * 25 18 17 28 28 H 1.09001 * 109.46841 * 300.00498 * 1 2 3 29 29 H 1.09005 * 109.46716 * 59.99979 * 1 2 3 30 30 H 1.08995 * 109.47269 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00437 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00184 * 94.99602 * 12 2 1 33 33 H 1.08004 * 120.06878 * 359.97438 * 20 19 18 34 34 H 1.08002 * 119.92706 * 180.29894 * 21 20 19 35 35 H 1.07998 * 119.84966 * 179.69787 * 22 21 20 36 36 H 1.07992 * 119.92654 * 180.02562 * 23 22 21 37 37 H 1.08008 * 120.06728 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1649 2.4117 15 7 2.5919 -0.6465 3.4455 16 6 2.7193 0.0216 4.5995 17 7 3.1460 -0.4585 5.7671 18 6 3.1920 0.3710 6.7650 19 6 3.6505 -0.0578 8.1038 20 6 3.6951 0.8579 9.1561 21 6 4.1185 0.4499 10.4041 22 6 4.5093 -0.8612 10.6109 23 6 4.4730 -1.7726 9.5706 24 6 4.0457 -1.3789 8.3193 25 7 2.8056 1.6372 6.5285 26 1 2.7814 2.3709 7.1626 27 16 2.3751 1.6850 4.8852 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.2489 -1.6318 1.1527 33 1 3.3949 1.8828 8.9947 34 1 4.1489 1.1564 11.2205 35 1 4.8446 -1.1743 11.5886 36 1 4.7790 -2.7945 9.7387 37 1 4.0174 -2.0915 7.5081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339128495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:03 Heat of formation + Delta-G solvation = 73.286980 kcal Electronic energy + Delta-G solvation = -22524.130400 eV Core-core repulsion = 19008.342164 eV Total energy + Delta-G solvation = -3515.788236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91657 -39.34458 -38.87834 -35.32685 -34.18545 -32.47529 -32.14628 -31.68486 -31.26925 -28.74686 -25.85509 -25.18269 -23.38637 -22.78650 -21.27089 -21.13246 -19.87194 -18.87446 -18.06458 -17.49721 -16.72554 -16.03114 -15.88298 -15.75614 -15.28607 -15.10848 -14.60809 -14.36636 -14.13352 -13.95928 -13.31508 -13.20110 -12.37410 -12.26510 -11.87089 -11.84202 -11.59638 -11.52874 -11.04971 -10.94526 -10.88150 -10.66311 -10.30682 -10.22723 -10.16612 -9.74333 -9.50592 -9.06157 -8.98215 -8.76990 -8.50835 -8.17534 -7.48973 -6.06494 -4.14723 -0.10549 0.52937 0.86184 1.01674 1.53553 2.43509 3.06600 3.30197 3.33054 3.36264 3.40133 3.89806 4.01951 4.27094 4.30640 4.38042 4.43250 4.62459 4.73426 4.88934 5.06376 5.25853 5.26090 5.51487 5.81796 5.85747 5.96947 6.05294 6.34304 6.38324 6.88911 7.00121 7.05777 7.21344 7.48572 7.64898 7.75012 7.80265 7.99743 8.21050 8.77788 8.86883 9.36959 9.54793 10.99813 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.002403 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.896843 B =11647.899201 C =12188.673660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.679 5.679 13 C 0.652 3.348 14 O -0.604 6.604 15 N -0.560 5.560 16 C 0.386 3.614 17 N -0.527 5.527 18 C 0.439 3.561 19 C -0.058 4.058 20 C -0.088 4.088 21 C -0.124 4.124 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.051 4.051 25 N -0.715 5.715 26 H 0.443 0.557 27 S 0.289 5.711 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.264 0.736 32 H 0.397 0.603 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 0.382 29.197 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.171 3.829 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.326 5.326 13 C 0.348 3.652 14 O -0.487 6.487 15 N -0.313 5.313 16 C 0.003 3.997 17 N -0.260 5.260 18 C 0.157 3.843 19 C -0.063 4.063 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.111 4.111 23 C -0.142 4.142 24 C -0.072 4.072 25 N -0.442 5.442 26 H 0.286 0.714 27 S 0.422 5.578 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.618 0.908 27.779 28.356 hybrid contribution 0.390 -0.209 -0.101 0.454 sum 6.008 0.698 27.678 28.331 Atomic orbital electron populations 1.22092 0.98335 0.99254 1.00864 1.18786 0.91042 0.93864 0.79200 0.93250 1.21231 1.32322 1.13234 0.90145 0.91877 1.24885 0.94871 0.94987 0.99033 1.69907 1.36024 1.22514 1.23823 0.86407 0.79222 0.79219 0.82021 1.20525 1.21114 1.19805 1.45568 1.65013 1.13791 1.08248 1.17001 0.79580 0.84454 0.84127 1.90705 1.57353 1.16815 1.83807 1.68371 1.31778 1.34026 0.97113 1.25340 0.90832 0.90336 0.93218 1.67666 1.29559 1.30863 0.97942 1.21331 0.88206 0.80406 0.94308 1.17979 1.04844 0.95407 0.88060 1.21129 0.98511 0.98628 0.92557 1.21054 0.99915 0.96594 0.96649 1.21449 0.96957 0.93332 0.99379 1.21257 1.00025 1.00418 0.92526 1.21503 0.93232 0.94540 0.97883 1.48645 1.63767 1.12860 1.18938 0.71351 1.87012 1.69328 1.16273 0.85154 0.96677 0.88999 0.95350 0.92622 0.76990 0.85813 0.85093 0.85323 0.84844 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.26 37.16 0.34 -3.54 16 2 C 0.27 7.48 2.56 -69.08 -0.18 7.30 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.88 8.73 -34.44 -0.30 -15.18 16 5 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.68 -16.62 5.07 -60.12 -0.31 -16.93 16 13 C 0.65 15.72 8.43 -88.22 -0.74 14.97 16 14 O -0.60 -15.38 13.54 4.98 0.07 -15.31 16 15 N -0.56 -12.10 10.61 -17.91 -0.19 -12.29 16 16 C 0.39 7.12 8.35 -89.00 -0.74 6.37 16 17 N -0.53 -8.09 9.83 -13.20 -0.13 -8.22 16 18 C 0.44 4.99 7.48 -157.80 -1.18 3.81 16 19 C -0.06 -0.49 5.87 -104.97 -0.62 -1.11 16 20 C -0.09 -0.50 9.61 -39.19 -0.38 -0.87 16 21 C -0.12 -0.57 10.03 -39.64 -0.40 -0.97 16 22 C -0.09 -0.43 10.04 -39.49 -0.40 -0.83 16 23 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 24 C -0.05 -0.42 9.61 -39.19 -0.38 -0.79 16 25 N -0.72 -6.95 6.61 31.20 0.21 -6.74 16 26 H 0.44 2.40 7.58 -40.82 -0.31 2.09 16 27 S 0.29 4.40 20.93 -107.50 -2.25 2.15 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.40 8.95 8.64 -40.82 -0.35 8.59 16 33 H 0.12 0.39 6.75 -52.48 -0.35 0.04 16 34 H 0.13 0.30 8.06 -52.49 -0.42 -0.13 16 35 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.15 1.32 7.63 -52.48 -0.40 0.92 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -35.06 334.82 -11.18 -46.25 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.78 Total: 4.88 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -5.46 Total: 9.79 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: 0.21 Total: -69.20 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.07 Total: -15.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -2.25 Total: 2.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.06 -11.18 -46.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339128495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.536 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds