Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47662 * 2 1 4 4 C 1.50697 * 109.47089 * 239.99661 * 2 1 3 5 5 H 1.08000 * 120.00291 * 240.00301 * 4 2 1 6 6 C 1.37880 * 119.99996 * 60.00535 * 4 2 1 7 7 N 1.31509 * 119.99936 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47270 * 89.99944 * 8 6 4 10 10 H 1.48502 * 109.46914 * 209.99578 * 8 6 4 11 11 H 1.48507 * 109.47364 * 329.99708 * 8 6 4 12 12 N 1.46507 * 109.46992 * 120.00031 * 2 1 3 13 13 C 1.34774 * 119.99765 * 274.99753 * 12 2 1 14 14 O 1.21932 * 119.99980 * 359.97438 * 13 12 2 15 15 N 1.33310 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.33954 * 119.99872 * 180.02562 * 15 13 12 17 17 N 1.33259 * 127.26685 * 179.97438 * 16 15 13 18 18 C 1.29853 * 117.03465 * 179.97438 * 17 16 15 19 19 C 1.47869 * 121.43491 * 180.02562 * 18 17 16 20 20 C 1.39564 * 120.14779 * 179.70289 * 19 18 17 21 21 C 1.37964 * 119.85375 * 179.72372 * 20 19 18 22 22 C 1.38359 * 120.14164 * 0.55289 * 21 20 19 23 23 C 1.38359 * 120.29185 * 359.72248 * 22 21 20 24 24 C 1.37960 * 120.13983 * 359.97438 * 23 22 21 25 25 N 1.34479 * 117.13922 * 359.97438 * 18 17 16 26 26 H 0.97001 * 127.18549 * 179.97438 * 25 18 17 27 27 S 1.69945 * 105.62148 * 359.73543 * 25 18 17 28 28 H 1.09001 * 109.46841 * 300.00498 * 1 2 3 29 29 H 1.09005 * 109.46716 * 59.99979 * 1 2 3 30 30 H 1.08995 * 109.47269 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00437 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00184 * 94.99602 * 12 2 1 33 33 H 1.08004 * 120.06878 * 359.97438 * 20 19 18 34 34 H 1.08002 * 119.92706 * 180.29894 * 21 20 19 35 35 H 1.07998 * 119.84966 * 179.69787 * 22 21 20 36 36 H 1.07992 * 119.92654 * 180.02562 * 23 22 21 37 37 H 1.08008 * 120.06728 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1649 2.4117 15 7 2.5919 -0.6465 3.4455 16 6 2.7193 0.0216 4.5995 17 7 3.1460 -0.4585 5.7671 18 6 3.1920 0.3710 6.7650 19 6 3.6505 -0.0578 8.1038 20 6 3.6951 0.8579 9.1561 21 6 4.1185 0.4499 10.4041 22 6 4.5093 -0.8612 10.6109 23 6 4.4730 -1.7726 9.5706 24 6 4.0457 -1.3789 8.3193 25 7 2.8056 1.6372 6.5285 26 1 2.7814 2.3709 7.1626 27 16 2.3751 1.6850 4.8852 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.2489 -1.6318 1.1527 33 1 3.3949 1.8828 8.9947 34 1 4.1489 1.1564 11.2205 35 1 4.8446 -1.1743 11.5886 36 1 4.7790 -2.7945 9.7387 37 1 4.0174 -2.0915 7.5081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339128495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = 48.383415 kcal Electronic energy + Delta-G solvation = -22525.210299 eV Core-core repulsion = 19008.342164 eV Total energy + Delta-G solvation = -3516.868136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92820 -40.98137 -39.59407 -37.16030 -35.67116 -34.37235 -33.54059 -32.33929 -31.82797 -30.72957 -27.38057 -26.88206 -24.43201 -23.47434 -22.68103 -22.28143 -21.49073 -20.40169 -19.09625 -18.95794 -17.87638 -17.61597 -17.16176 -17.02886 -16.56186 -16.43124 -15.97316 -15.66584 -15.20700 -14.77116 -14.47285 -14.38240 -13.90766 -13.72809 -13.38136 -13.09535 -12.96226 -12.78535 -12.70378 -12.46523 -12.30822 -12.22908 -12.13186 -12.02994 -11.33195 -11.31662 -11.13584 -10.63109 -10.29157 -10.03982 -9.95295 -9.77152 -9.03922 -8.19028 -6.36264 -1.10656 -0.64266 0.11499 0.21653 0.42728 1.37123 1.44148 1.45841 1.56610 1.82131 2.39976 2.59709 2.79440 2.83616 2.92932 3.10965 3.49571 3.90554 4.00835 4.27194 4.40826 4.47686 4.59007 4.74994 4.82098 4.90575 5.05286 5.09720 5.32842 5.36807 5.42338 5.50451 5.54257 5.60008 5.65495 5.72867 5.89164 5.93275 6.06216 6.40355 6.69903 6.92700 7.31585 7.68299 8.87905 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.002403 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.896843 B =11647.899201 C =12188.673660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.283 3.717 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.267 1.267 12 N -0.686 5.686 13 C 0.653 3.347 14 O -0.636 6.636 15 N -0.602 5.602 16 C 0.379 3.621 17 N -0.554 5.554 18 C 0.455 3.545 19 C -0.085 4.085 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.067 4.067 25 N -0.679 5.679 26 H 0.466 0.534 27 S 0.292 5.708 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.268 0.732 32 H 0.403 0.597 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 0.455 32.596 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.179 3.821 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.553 5.553 8 Si 0.802 3.198 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.334 5.334 13 C 0.349 3.651 14 O -0.521 6.521 15 N -0.359 5.359 16 C -0.002 4.002 17 N -0.288 5.288 18 C 0.175 3.825 19 C -0.090 4.090 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.099 4.099 23 C -0.148 4.148 24 C -0.088 4.088 25 N -0.408 5.408 26 H 0.316 0.684 27 S 0.427 5.573 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.741 1.053 31.328 32.063 hybrid contribution 0.145 -0.107 -0.636 0.660 sum 6.886 0.946 30.693 31.470 Atomic orbital electron populations 1.21905 0.97983 0.99403 0.99743 1.18411 0.91257 0.91810 0.80575 0.97830 1.21493 1.32900 1.13636 0.90771 0.91340 1.25812 0.94805 0.95627 1.02214 1.70041 1.36768 1.23749 1.24773 0.85264 0.78862 0.78071 0.77636 1.19431 1.20669 1.19187 1.45271 1.66191 1.13989 1.07962 1.17161 0.79170 0.84102 0.84664 1.90666 1.58777 1.17867 1.84789 1.68337 1.35572 1.34562 0.97461 1.25607 0.89725 0.91485 0.93402 1.67665 1.31150 1.32320 0.97701 1.21849 0.86063 0.79952 0.94650 1.18044 1.07541 0.96417 0.87039 1.21463 0.97241 0.99255 0.92039 1.21490 0.98497 0.97177 0.96873 1.21895 0.94802 0.93104 1.00111 1.21484 0.99722 1.01745 0.91835 1.21504 0.94361 0.94350 0.98619 1.48447 1.61925 1.13316 1.17090 0.68429 1.86926 1.68124 1.14407 0.87825 0.96949 0.90758 0.94391 0.92329 0.76197 0.83138 0.81910 0.82369 0.83244 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.25 9.26 71.98 0.67 -6.59 16 2 C 0.28 16.27 2.56 44.24 0.11 16.38 16 3 H 0.00 0.25 7.58 -2.38 -0.02 0.23 16 4 C -0.55 -31.67 8.73 25.60 0.22 -31.45 16 5 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.09 16 8 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.69 -35.39 5.07 -462.25 -2.35 -37.73 16 13 C 0.65 33.23 8.43 179.51 1.51 34.75 16 14 O -0.64 -34.18 13.54 -5.10 -0.07 -34.25 16 15 N -0.60 -27.37 10.61 -329.52 -3.50 -30.87 16 16 C 0.38 14.45 8.35 179.78 1.50 15.95 16 17 N -0.55 -17.29 9.83 -195.68 -1.92 -19.21 16 18 C 0.45 9.81 7.48 137.63 1.03 10.84 16 19 C -0.09 -1.27 5.87 -20.09 -0.12 -1.39 16 20 C -0.08 -0.58 9.61 22.52 0.22 -0.37 16 21 C -0.12 -0.52 10.03 22.23 0.22 -0.29 16 22 C -0.08 -0.39 10.04 22.33 0.22 -0.17 16 23 C -0.13 -1.18 10.03 22.23 0.22 -0.95 16 24 C -0.07 -1.03 9.61 22.52 0.22 -0.81 16 25 N -0.68 -11.87 6.61 -55.22 -0.36 -12.23 16 26 H 0.47 3.47 7.58 -92.71 -0.70 2.76 16 27 S 0.29 8.91 20.93 -56.49 -1.18 7.73 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 4.34 6.07 -2.38 -0.01 4.33 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.40 19.16 8.64 -92.71 -0.80 18.36 16 33 H 0.15 0.19 6.75 -2.91 -0.02 0.17 16 34 H 0.16 -0.27 8.06 -2.91 -0.02 -0.29 16 35 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.13 2.39 7.63 -2.91 -0.02 2.37 16 Total: -1.00 -80.98 334.82 -0.99 -81.97 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.36 Total: 15.18 kcal Atomic # 6 Polarization: 30.75 SS G_CDS: 6.48 Total: 37.23 kcal Atomic # 7 Polarization: -146.25 SS G_CDS: -7.89 Total: -154.14 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 8.91 SS G_CDS: -1.18 Total: 7.73 kcal Total: -80.98 -0.99 -81.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339128495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.356 kcal (2) G-P(sol) polarization free energy of solvation -80.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds