Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.47437 * 179.97438 * 15 13 12 17 17 C 1.33860 * 122.07924 * 125.00116 * 16 15 13 18 18 S 1.76258 * 108.19273 * 180.02562 * 17 16 15 19 19 C 1.76174 * 89.83126 * 0.02562 * 18 17 16 20 20 C 1.47814 * 125.47380 * 180.02562 * 19 18 17 21 21 C 1.39691 * 120.12571 * 359.69616 * 20 19 18 22 22 N 1.31943 * 119.84494 * 179.73318 * 21 20 19 23 23 C 1.32246 * 120.11353 * 0.54458 * 22 21 20 24 24 C 1.38433 * 120.25700 * 359.70950 * 23 22 21 25 25 N 1.32013 * 120.15434 * 0.02562 * 24 23 22 26 26 N 1.30242 * 109.05697 * 359.73905 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 33 33 H 1.09000 * 109.46519 * 60.00292 * 15 13 12 34 34 H 1.07998 * 125.90291 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.08262 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.87214 * 179.68634 * 23 22 21 37 37 H 1.08004 * 119.92764 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 6 2.7004 0.2395 4.7411 17 6 2.0738 -0.0006 5.8994 18 16 2.3743 1.3593 6.9798 19 6 3.3394 2.1349 5.7266 20 6 4.0170 3.4427 5.8519 21 6 3.9149 4.1744 7.0375 22 7 4.5263 5.3386 7.1452 23 6 5.2254 5.8174 6.1298 24 6 5.3251 5.0985 4.9510 25 7 4.7219 3.9301 4.8337 26 7 3.3652 1.3682 4.6741 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5508 3.8325 33 1 3.6481 -1.1213 3.3984 34 1 1.4852 -0.8758 6.1315 35 1 3.3409 3.7859 7.8657 36 1 5.7201 6.7732 6.2204 37 1 5.8970 5.4948 4.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340116354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = 61.461866 kcal Electronic energy + Delta-G solvation = -22804.689245 eV Core-core repulsion = 19288.388234 eV Total energy + Delta-G solvation = -3516.301011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27235 -39.97277 -38.32337 -34.78393 -34.57861 -33.10019 -32.33457 -31.15827 -29.20103 -27.61141 -26.30612 -25.21299 -24.83160 -23.01500 -21.27368 -19.64990 -19.36337 -18.35821 -17.39739 -17.27118 -16.97966 -16.52783 -15.78346 -15.31254 -15.17381 -14.89467 -14.45694 -14.24314 -13.90337 -13.65808 -13.31626 -13.08155 -12.75144 -12.33130 -12.12124 -11.82296 -11.71505 -11.55802 -11.37249 -11.05756 -10.89014 -10.65743 -10.28257 -10.20168 -10.19040 -9.69882 -9.39748 -9.38369 -9.00201 -8.97795 -8.52906 -8.49266 -7.82227 -6.08370 -4.17449 -0.16870 0.74781 1.03517 1.12103 1.47380 2.77618 3.26400 3.33165 3.35662 3.43262 3.51772 3.54603 3.90133 4.03538 4.19841 4.22304 4.44029 4.61650 4.89446 4.90560 5.02864 5.11890 5.18039 5.23731 5.47215 5.62215 5.73484 5.93008 6.08652 6.86758 6.93742 7.00321 7.20114 7.43706 7.53424 7.61994 7.73446 7.76945 7.97218 8.19707 8.73746 8.83872 9.22654 9.50366 10.97675 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002967 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.548196 B = 9435.516614 C =10575.975647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.504 3.496 14 O -0.536 6.536 15 C -0.075 4.075 16 C 0.096 3.904 17 C -0.232 4.232 18 S 0.093 5.907 19 C 0.099 3.901 20 C 0.154 3.846 21 C 0.069 3.931 22 N -0.432 5.432 23 C 0.050 3.950 24 C 0.062 3.938 25 N -0.395 5.395 26 N -0.386 5.386 27 H 0.013 0.987 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 1.936 21.222 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.361 5.361 13 C 0.288 3.712 14 O -0.413 6.413 15 C -0.118 4.118 16 C -0.039 4.039 17 C -0.371 4.371 18 S 0.347 5.653 19 C -0.178 4.178 20 C 0.012 3.988 21 C -0.094 4.094 22 N -0.145 5.145 23 C -0.110 4.110 24 C -0.099 4.099 25 N -0.110 5.110 26 N -0.099 5.099 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.202 0.798 35 H 0.186 0.814 36 H 0.193 0.807 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.642 3.319 21.670 22.637 hybrid contribution 0.243 -1.531 -1.677 2.283 sum 5.885 1.789 19.993 20.918 Atomic orbital electron populations 1.22072 0.98639 0.98971 1.00790 1.18700 0.90843 0.94028 0.80000 0.93431 1.21232 1.32315 1.13149 0.90370 0.92088 1.24893 0.94876 0.94953 0.99055 1.69906 1.36009 1.22434 1.23803 0.86453 0.79156 0.79253 0.82259 1.20592 1.21092 1.19842 1.46465 1.65709 1.13444 1.10463 1.20034 0.79201 0.87626 0.84371 1.90700 1.50067 1.15655 1.84864 1.20411 1.04276 0.96204 0.90911 1.19679 0.96312 0.93026 0.94836 1.26942 1.08935 1.04259 0.96964 1.84593 1.48195 1.13670 1.18856 1.25047 1.02672 0.97900 0.92223 1.19574 0.95715 0.91969 0.91534 1.23602 0.97571 0.91348 0.96845 1.68463 1.05314 1.10964 1.29807 1.23947 0.95984 1.00985 0.90102 1.23985 0.96661 0.90589 0.98704 1.68627 1.03301 1.11385 1.27716 1.66216 1.17439 1.02571 1.23647 0.96800 0.95537 0.89238 0.92629 0.78045 0.87633 0.87441 0.79817 0.81356 0.80730 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.81 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.71 -15.05 5.07 -54.93 -0.28 -15.33 16 13 C 0.50 10.35 7.75 -10.99 -0.09 10.27 16 14 O -0.54 -13.57 15.09 5.56 0.08 -13.48 16 15 C -0.08 -1.08 6.17 -29.03 -0.18 -1.26 16 16 C 0.10 1.45 5.60 -84.41 -0.47 0.98 16 17 C -0.23 -2.69 11.03 29.19 0.32 -2.37 16 18 S 0.09 0.99 22.40 -107.50 -2.41 -1.42 16 19 C 0.10 1.47 7.43 -14.31 -0.11 1.36 16 20 C 0.15 2.15 6.75 -82.86 -0.56 1.59 16 21 C 0.07 0.76 10.79 -16.96 -0.18 0.57 16 22 N -0.43 -4.60 10.49 -12.73 -0.13 -4.74 16 23 C 0.05 0.44 11.22 -17.30 -0.19 0.25 16 24 C 0.06 0.65 11.22 -17.40 -0.20 0.46 16 25 N -0.39 -5.91 10.42 -9.66 -0.10 -6.01 16 26 N -0.39 -6.85 9.60 -7.56 -0.07 -6.93 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 32 H 0.11 1.11 8.01 -51.93 -0.42 0.69 16 33 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.17 1.39 7.30 -52.49 -0.38 1.01 16 36 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -36.67 341.21 -7.98 -44.65 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.93 Total: 4.74 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.88 Total: 2.27 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.04 Total: -57.81 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.41 Total: -1.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.67 -7.98 -44.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340116354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.108 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds