Wall clock time and date at job start Tue Mar 31 2020 12:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.47437 * 179.97438 * 15 13 12 17 17 C 1.33860 * 122.07924 * 125.00116 * 16 15 13 18 18 S 1.76258 * 108.19273 * 180.02562 * 17 16 15 19 19 C 1.76174 * 89.83126 * 0.02562 * 18 17 16 20 20 C 1.47814 * 125.47380 * 180.02562 * 19 18 17 21 21 C 1.39691 * 120.12571 * 359.69616 * 20 19 18 22 22 N 1.31943 * 119.84494 * 179.73318 * 21 20 19 23 23 C 1.32246 * 120.11353 * 0.54458 * 22 21 20 24 24 C 1.38433 * 120.25700 * 359.70950 * 23 22 21 25 25 N 1.32013 * 120.15434 * 0.02562 * 24 23 22 26 26 N 1.30242 * 109.05697 * 359.73905 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 33 33 H 1.09000 * 109.46519 * 60.00292 * 15 13 12 34 34 H 1.07998 * 125.90291 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.08262 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.87214 * 179.68634 * 23 22 21 37 37 H 1.08004 * 119.92764 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 6 2.7004 0.2395 4.7411 17 6 2.0738 -0.0006 5.8994 18 16 2.3743 1.3593 6.9798 19 6 3.3394 2.1349 5.7266 20 6 4.0170 3.4427 5.8519 21 6 3.9149 4.1744 7.0375 22 7 4.5263 5.3386 7.1452 23 6 5.2254 5.8174 6.1298 24 6 5.3251 5.0985 4.9510 25 7 4.7219 3.9301 4.8337 26 7 3.3652 1.3682 4.6741 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5508 3.8325 33 1 3.6481 -1.1213 3.3984 34 1 1.4852 -0.8758 6.1315 35 1 3.3409 3.7859 7.8657 36 1 5.7201 6.7732 6.2204 37 1 5.8970 5.4948 4.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340116354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:42 Heat of formation + Delta-G solvation = 32.714498 kcal Electronic energy + Delta-G solvation = -22805.935825 eV Core-core repulsion = 19288.388234 eV Total energy + Delta-G solvation = -3517.547591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.10549 -41.14279 -39.85076 -36.66368 -35.50755 -34.33090 -34.00044 -32.30873 -30.84405 -28.89097 -27.35068 -27.20781 -25.65861 -24.10862 -22.97298 -21.24407 -20.53504 -19.51884 -18.64367 -18.24265 -17.96220 -17.62373 -17.34328 -17.11289 -16.26806 -16.04715 -15.94750 -15.57859 -15.10679 -14.74843 -14.49535 -14.38861 -14.06759 -13.86612 -13.75317 -13.26704 -12.98641 -12.79312 -12.74104 -12.69254 -12.47269 -12.34405 -12.27608 -12.13932 -11.10318 -11.07664 -10.73514 -10.64619 -10.53882 -10.31012 -10.21957 -9.69887 -9.42592 -8.17603 -6.35572 -1.03195 -0.08493 0.13926 0.23568 0.55921 1.43725 1.45336 1.55898 1.75455 1.92453 2.37725 2.61320 2.68539 2.79786 3.12624 3.18404 3.21440 3.41264 3.69635 4.03539 4.12577 4.18027 4.29213 4.34514 4.40523 4.51611 4.69562 4.75919 4.90598 5.01553 5.09954 5.25481 5.44612 5.62859 5.70601 5.93679 6.10721 6.14110 6.61590 6.73465 6.83920 7.03912 7.33086 7.65852 8.88913 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002967 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.548196 B = 9435.516614 C =10575.975647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.012 1.012 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.708 5.708 13 C 0.497 3.503 14 O -0.590 6.590 15 C -0.059 4.059 16 C 0.054 3.946 17 C -0.218 4.218 18 S 0.171 5.829 19 C 0.063 3.937 20 C 0.124 3.876 21 C 0.075 3.925 22 N -0.444 5.444 23 C 0.068 3.932 24 C 0.054 3.946 25 N -0.450 5.450 26 N -0.444 5.444 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.225 0.775 35 H 0.192 0.808 36 H 0.220 0.780 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 0.346 23.010 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.006 0.994 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.471 6.471 15 C -0.101 4.101 16 C -0.080 4.080 17 C -0.358 4.358 18 S 0.425 5.575 19 C -0.212 4.212 20 C -0.017 4.017 21 C -0.087 4.087 22 N -0.158 5.158 23 C -0.093 4.093 24 C -0.108 4.108 25 N -0.166 5.166 26 N -0.158 5.158 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.170 0.830 33 H 0.142 0.858 34 H 0.242 0.758 35 H 0.208 0.792 36 H 0.236 0.764 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.040 1.675 23.506 24.327 hybrid contribution 0.138 -0.906 -2.127 2.316 sum 6.178 0.770 21.379 22.267 Atomic orbital electron populations 1.21871 0.98334 0.99512 0.99244 1.18253 0.91042 0.91554 0.82242 0.99394 1.21577 1.32501 1.13533 0.90808 0.90687 1.25859 0.94907 0.95588 1.02510 1.70071 1.37206 1.24029 1.24556 0.85305 0.79033 0.78006 0.77746 1.19367 1.21341 1.18756 1.46214 1.65785 1.14237 1.09560 1.21149 0.77660 0.87174 0.85606 1.90674 1.52181 1.18393 1.85848 1.20399 1.05836 0.96478 0.87421 1.19852 0.98436 0.93314 0.96360 1.27478 1.06932 1.05429 0.95911 1.84202 1.45550 1.11623 1.16095 1.25403 1.03966 0.98434 0.93437 1.19813 0.96878 0.92570 0.92472 1.23844 0.97293 0.91148 0.96367 1.68574 1.05904 1.10845 1.30451 1.24611 0.94258 1.01731 0.88661 1.24512 0.96329 0.89659 1.00325 1.68521 1.04987 1.13655 1.29436 1.66167 1.19556 1.04149 1.25967 0.97296 0.93692 0.91770 0.92615 0.75801 0.82975 0.85799 0.75839 0.79154 0.76380 0.78125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.78 2.56 44.25 0.11 14.89 16 3 H -0.01 -0.78 7.58 -2.39 -0.02 -0.79 16 4 C -0.55 -29.75 8.73 25.60 0.22 -29.53 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -54.53 11.32 21.45 0.24 -54.29 16 8 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 12 N -0.71 -30.17 5.07 -446.10 -2.26 -32.44 16 13 C 0.50 20.77 7.75 87.66 0.68 21.45 16 14 O -0.59 -31.49 15.09 -3.02 -0.05 -31.53 16 15 C -0.06 -1.62 6.17 29.10 0.18 -1.44 16 16 C 0.05 1.61 5.60 41.66 0.23 1.84 16 17 C -0.22 -4.49 11.03 66.82 0.74 -3.76 16 18 S 0.17 3.32 22.40 -56.49 -1.27 2.06 16 19 C 0.06 1.92 7.43 87.46 0.65 2.57 16 20 C 0.12 3.56 6.75 41.84 0.28 3.84 16 21 C 0.07 1.61 10.79 85.03 0.92 2.53 16 22 N -0.44 -8.91 10.49 -194.17 -2.04 -10.94 16 23 C 0.07 1.09 11.22 84.68 0.95 2.04 16 24 C 0.05 1.13 11.22 84.71 0.95 2.08 16 25 N -0.45 -14.18 10.42 -184.48 -1.92 -16.10 16 26 N -0.44 -16.29 9.60 -177.83 -1.71 -18.00 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 3.69 6.07 -2.38 -0.01 3.68 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.41 14.00 8.54 -92.71 -0.79 13.21 16 32 H 0.15 2.63 8.01 -2.39 -0.02 2.61 16 33 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.19 2.91 7.30 -2.91 -0.02 2.89 16 36 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -86.80 341.21 0.40 -86.40 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.33 Total: 18.56 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.03 Total: 11.37 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -7.68 Total: -131.76 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.53 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.27 Total: 2.06 kcal Total: -86.80 0.40 -86.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340116354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.113 kcal (2) G-P(sol) polarization free energy of solvation -86.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds