Wall clock time and date at job start Tue Mar 31 2020 12:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36878 * 119.99837 * 2 1 4 4 H 1.07997 * 119.99650 * 117.40073 * 3 2 1 5 5 C 1.39043 * 120.00371 * 297.39829 * 3 2 1 6 6 N 1.31371 * 119.99968 * 28.16746 * 5 3 2 7 7 Si 1.86799 * 120.00307 * 208.16519 * 5 3 2 8 8 H 1.48497 * 109.46900 * 60.00060 * 7 5 3 9 9 H 1.48499 * 109.47263 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46780 * 300.00210 * 7 5 3 11 11 C 1.34772 * 120.00115 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99977 * 181.76304 * 11 2 1 13 13 C 1.47725 * 120.00050 * 1.75281 * 11 2 1 14 14 C 1.39646 * 120.15391 * 314.04133 * 13 11 2 15 15 C 1.37932 * 119.84624 * 180.24695 * 14 13 11 16 16 C 1.38375 * 120.15404 * 359.47122 * 15 14 13 17 17 C 1.50697 * 119.84915 * 180.25853 * 16 15 14 18 18 S 1.81400 * 109.47449 * 89.99738 * 17 16 15 19 19 C 1.76206 * 103.00138 * 179.97438 * 18 17 16 20 20 N 1.33685 * 125.61842 * 180.02562 * 19 18 17 21 21 C 1.30866 * 109.76948 * 179.97438 * 20 19 18 22 22 N 1.34350 * 108.22759 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.75625 * 180.02562 * 22 21 20 24 24 N 1.31254 * 125.61185 * 359.68795 * 19 18 17 25 25 C 1.38375 * 120.30277 * 0.27449 * 16 15 14 26 26 C 1.37935 * 120.15415 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46356 * 293.41240 * 1 2 3 28 28 H 1.09003 * 109.47251 * 53.41120 * 1 2 3 29 29 H 1.08998 * 109.47335 * 173.41821 * 1 2 3 30 30 H 0.96998 * 120.00097 * 180.02562 * 6 5 3 31 31 H 1.08005 * 120.07690 * 0.02562 * 14 13 11 32 32 H 1.08005 * 119.92529 * 179.74513 * 15 14 13 33 33 H 1.09006 * 109.47186 * 210.00075 * 17 16 15 34 34 H 1.09000 * 109.47316 * 329.99030 * 17 16 15 35 35 H 1.08003 * 125.88951 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.92543 * 180.02562 * 25 16 15 37 37 H 1.08001 * 120.08317 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 2.7921 1.4378 0.8304 5 6 2.0171 2.0646 -1.0690 6 7 0.9076 2.0815 -1.7722 7 14 3.4171 3.2218 -1.5054 8 1 4.6279 2.4298 -1.8400 9 1 3.0282 4.0503 -2.6748 10 1 3.7078 4.1055 -0.3480 11 6 2.1389 -1.1671 -0.0005 12 8 3.3544 -1.1674 0.0319 13 6 1.4008 -2.4462 -0.0402 14 6 0.3006 -2.6474 0.7958 15 6 -0.3809 -3.8460 0.7572 16 6 0.0168 -4.8438 -0.1152 17 6 -0.7363 -6.1485 -0.1559 18 16 -2.0764 -6.0356 -1.3732 19 6 -2.8303 -7.6256 -1.2815 20 7 -3.8797 -8.0325 -2.0028 21 6 -4.1824 -9.2659 -1.6871 22 7 -3.3208 -9.6818 -0.7439 23 1 -3.3017 -10.5535 -0.3189 24 7 -2.4500 -8.6077 -0.4981 25 6 1.1029 -4.6492 -0.9502 26 6 1.7965 -3.4574 -0.9184 27 1 -0.3632 0.4084 0.9431 28 1 -0.3634 0.6126 -0.8252 29 1 -0.3634 -1.0209 -0.1178 30 1 0.8154 2.6946 -2.5182 31 1 -0.0139 -1.8676 1.4737 32 1 -1.2295 -4.0046 1.4062 33 1 -0.0559 -6.9521 -0.4380 34 1 -1.1559 -6.3567 0.8283 35 1 -4.9862 -9.8491 -2.1117 36 1 1.4077 -5.4319 -1.6291 37 1 2.6438 -3.3065 -1.5709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344873732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:00 Heat of formation + Delta-G solvation = 94.006707 kcal Electronic energy + Delta-G solvation = -22535.092561 eV Core-core repulsion = 19020.202800 eV Total energy + Delta-G solvation = -3514.889761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33230 -39.60201 -37.67126 -34.56385 -32.95394 -32.87833 -31.77203 -31.53263 -30.69596 -27.60091 -26.11177 -24.47102 -23.67316 -22.66968 -22.40071 -21.59116 -19.46195 -18.97705 -17.11806 -16.80521 -16.21566 -15.94196 -15.68968 -15.51605 -15.27153 -14.82286 -14.42284 -14.27234 -13.77846 -13.64387 -13.34437 -12.85709 -12.63976 -12.56511 -12.23300 -11.84156 -11.48480 -11.33879 -11.17581 -11.06638 -10.96591 -10.87920 -10.67274 -10.44604 -10.36308 -10.34612 -10.30192 -8.69772 -8.65702 -8.62457 -8.26710 -7.90426 -7.28178 -6.35422 -4.14772 0.65514 1.13281 1.46219 1.64752 2.02705 2.41396 2.56847 3.24509 3.30781 3.39811 3.73935 4.08411 4.11311 4.36694 4.48046 4.59076 4.72404 4.74628 5.04381 5.17483 5.26802 5.40168 5.43010 5.63668 5.70789 5.77173 5.83065 6.11481 6.25601 6.38593 6.57075 6.57944 6.64437 6.67600 6.83822 7.13844 7.26414 7.50304 7.61446 8.40322 8.59943 9.17897 9.27419 10.00470 10.62627 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031951 B = 0.002435 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.134894 B =11498.338851 C =11840.720589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.437 5.437 3 C -0.338 4.338 4 H 0.082 0.918 5 C 0.068 3.932 6 N -0.850 5.850 7 Si 0.904 3.096 8 H -0.269 1.269 9 H -0.285 1.285 10 H -0.272 1.272 11 C 0.504 3.496 12 O -0.568 6.568 13 C -0.082 4.082 14 C -0.095 4.095 15 C -0.105 4.105 16 C -0.087 4.087 17 C -0.066 4.066 18 S 0.037 5.963 19 C 0.208 3.792 20 N -0.522 5.522 21 C 0.271 3.729 22 N -0.483 5.483 23 H 0.442 0.558 24 N -0.322 5.322 25 C -0.103 4.103 26 C -0.080 4.080 27 H 0.035 0.965 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.271 0.729 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.126 0.874 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 -22.116 1.256 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.157 5.157 3 C -0.465 4.465 4 H 0.100 0.900 5 C -0.141 4.141 6 N -0.484 5.484 7 Si 0.729 3.271 8 H -0.194 1.194 9 H -0.211 1.211 10 H -0.197 1.197 11 C 0.292 3.708 12 O -0.451 6.451 13 C -0.086 4.086 14 C -0.114 4.114 15 C -0.125 4.125 16 C -0.090 4.090 17 C -0.214 4.214 18 S 0.267 5.733 19 C -0.182 4.182 20 N -0.251 5.251 21 C -0.030 4.030 22 N -0.201 5.201 23 H 0.288 0.712 24 N -0.156 5.156 25 C -0.123 4.123 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.243 0.757 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.173 -20.824 0.651 23.641 hybrid contribution 0.473 -1.349 0.642 1.568 sum -10.700 -22.173 1.293 24.654 Atomic orbital electron populations 1.22444 0.83228 1.00675 1.02441 1.43099 1.04610 1.04093 1.63854 1.18899 1.26940 0.95187 1.05445 0.90044 1.25708 0.95628 0.97764 0.94957 1.69846 1.22776 1.36349 1.19414 0.86411 0.83109 0.79416 0.78122 1.19389 1.21107 1.19684 1.18546 0.87439 0.83486 0.81361 1.90633 1.13422 1.87048 1.53960 1.20559 0.95612 0.95889 0.96556 1.21433 0.94215 0.96921 0.98829 1.20905 0.99946 0.92780 0.98896 1.19081 0.96868 0.93977 0.99064 1.22531 0.98013 0.99279 1.01561 1.86314 1.33411 1.02190 1.51362 1.26393 0.96260 1.00677 0.94847 1.70654 1.15715 1.10849 1.27880 1.26212 0.95290 0.92187 0.89347 1.48001 1.24396 1.14963 1.32790 0.71229 1.78387 1.16290 0.95437 1.25510 1.20908 0.95302 0.97511 0.98546 1.21162 0.99118 0.91886 0.97733 0.94644 0.88794 0.92941 0.91886 0.84876 0.85631 0.88254 0.88232 0.75714 0.85651 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 9.06 59.85 0.54 1.77 16 2 N -0.44 -11.36 2.89 -123.32 -0.36 -11.71 16 3 C -0.34 -9.53 8.50 -15.00 -0.13 -9.66 16 4 H 0.08 2.35 7.97 -52.49 -0.42 1.93 16 5 C 0.07 1.85 5.45 -17.45 -0.10 1.75 16 6 N -0.85 -23.06 11.48 55.50 0.64 -22.42 16 7 Si 0.90 21.23 29.64 -169.99 -5.04 16.19 16 8 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 C 0.50 12.72 7.22 -12.39 -0.09 12.63 16 12 O -0.57 -16.28 16.96 5.28 0.09 -16.20 16 13 C -0.08 -1.63 5.09 -104.97 -0.53 -2.16 16 14 C -0.10 -1.58 7.31 -39.17 -0.29 -1.86 16 15 C -0.11 -1.44 9.68 -39.64 -0.38 -1.82 16 16 C -0.09 -1.15 5.15 -104.52 -0.54 -1.68 16 17 C -0.07 -0.72 5.68 36.00 0.20 -0.52 16 18 S 0.04 0.45 22.15 -107.50 -2.38 -1.93 16 19 C 0.21 2.57 8.28 -90.96 -0.75 1.81 16 20 N -0.52 -6.01 11.21 -14.81 -0.17 -6.17 16 21 C 0.27 1.78 13.12 -90.70 -1.19 0.59 16 22 N -0.48 -3.24 7.43 29.52 0.22 -3.02 16 23 H 0.44 1.16 8.96 -182.34 -1.63 -0.47 16 24 N -0.32 -3.58 12.36 30.13 0.37 -3.20 16 25 C -0.10 -1.45 9.68 -39.64 -0.38 -1.83 16 26 C -0.08 -1.40 9.70 -39.16 -0.38 -1.78 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.30 6.01 -51.93 -0.31 1.98 16 29 H 0.05 1.01 4.32 -51.93 -0.22 0.79 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.13 2.12 6.71 -52.48 -0.35 1.77 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.10 1.02 8.08 -51.92 -0.42 0.60 16 34 H 0.10 1.01 8.08 -51.92 -0.42 0.59 16 35 H 0.23 0.22 8.06 -52.48 -0.42 -0.21 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -35.84 338.18 -10.57 -46.41 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.03 Total: -0.27 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.01 Total: -2.77 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.71 Total: -46.53 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.04 Total: 16.19 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.38 Total: -1.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.84 -10.57 -46.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344873732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.414 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds