Wall clock time and date at job start Tue Mar 31 2020 12:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36878 * 119.99837 * 2 1 4 4 H 1.07997 * 119.99650 * 117.40073 * 3 2 1 5 5 C 1.39043 * 120.00371 * 297.39829 * 3 2 1 6 6 N 1.31371 * 119.99968 * 28.16746 * 5 3 2 7 7 Si 1.86799 * 120.00307 * 208.16519 * 5 3 2 8 8 H 1.48497 * 109.46900 * 60.00060 * 7 5 3 9 9 H 1.48499 * 109.47263 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46780 * 300.00210 * 7 5 3 11 11 C 1.34772 * 120.00115 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99977 * 181.76304 * 11 2 1 13 13 C 1.47725 * 120.00050 * 1.75281 * 11 2 1 14 14 C 1.39646 * 120.15391 * 314.04133 * 13 11 2 15 15 C 1.37932 * 119.84624 * 180.24695 * 14 13 11 16 16 C 1.38375 * 120.15404 * 359.47122 * 15 14 13 17 17 C 1.50697 * 119.84915 * 180.25853 * 16 15 14 18 18 S 1.81400 * 109.47449 * 89.99738 * 17 16 15 19 19 C 1.76206 * 103.00138 * 179.97438 * 18 17 16 20 20 N 1.33685 * 125.61842 * 180.02562 * 19 18 17 21 21 C 1.30866 * 109.76948 * 179.97438 * 20 19 18 22 22 N 1.34350 * 108.22759 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.75625 * 180.02562 * 22 21 20 24 24 N 1.31254 * 125.61185 * 359.68795 * 19 18 17 25 25 C 1.38375 * 120.30277 * 0.27449 * 16 15 14 26 26 C 1.37935 * 120.15415 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46356 * 293.41240 * 1 2 3 28 28 H 1.09003 * 109.47251 * 53.41120 * 1 2 3 29 29 H 1.08998 * 109.47335 * 173.41821 * 1 2 3 30 30 H 0.96998 * 120.00097 * 180.02562 * 6 5 3 31 31 H 1.08005 * 120.07690 * 0.02562 * 14 13 11 32 32 H 1.08005 * 119.92529 * 179.74513 * 15 14 13 33 33 H 1.09006 * 109.47186 * 210.00075 * 17 16 15 34 34 H 1.09000 * 109.47316 * 329.99030 * 17 16 15 35 35 H 1.08003 * 125.88951 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.92543 * 180.02562 * 25 16 15 37 37 H 1.08001 * 120.08317 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 2.7921 1.4378 0.8304 5 6 2.0171 2.0646 -1.0690 6 7 0.9076 2.0815 -1.7722 7 14 3.4171 3.2218 -1.5054 8 1 4.6279 2.4298 -1.8400 9 1 3.0282 4.0503 -2.6748 10 1 3.7078 4.1055 -0.3480 11 6 2.1389 -1.1671 -0.0005 12 8 3.3544 -1.1674 0.0319 13 6 1.4008 -2.4462 -0.0402 14 6 0.3006 -2.6474 0.7958 15 6 -0.3809 -3.8460 0.7572 16 6 0.0168 -4.8438 -0.1152 17 6 -0.7363 -6.1485 -0.1559 18 16 -2.0764 -6.0356 -1.3732 19 6 -2.8303 -7.6256 -1.2815 20 7 -3.8797 -8.0325 -2.0028 21 6 -4.1824 -9.2659 -1.6871 22 7 -3.3208 -9.6818 -0.7439 23 1 -3.3017 -10.5535 -0.3189 24 7 -2.4500 -8.6077 -0.4981 25 6 1.1029 -4.6492 -0.9502 26 6 1.7965 -3.4574 -0.9184 27 1 -0.3632 0.4084 0.9431 28 1 -0.3634 0.6126 -0.8252 29 1 -0.3634 -1.0209 -0.1178 30 1 0.8154 2.6946 -2.5182 31 1 -0.0139 -1.8676 1.4737 32 1 -1.2295 -4.0046 1.4062 33 1 -0.0559 -6.9521 -0.4380 34 1 -1.1559 -6.3567 0.8283 35 1 -4.9862 -9.8491 -2.1117 36 1 1.4077 -5.4319 -1.6291 37 1 2.6438 -3.3065 -1.5709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344873732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:00 Heat of formation + Delta-G solvation = 71.347107 kcal Electronic energy + Delta-G solvation = -22536.075155 eV Core-core repulsion = 19020.202800 eV Total energy + Delta-G solvation = -3515.872355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98318 -41.13199 -39.31383 -36.58932 -34.38249 -33.56136 -33.45188 -32.32470 -31.98897 -28.95302 -27.93089 -26.29433 -24.34897 -23.67891 -23.59860 -22.74656 -21.11227 -19.57799 -19.05462 -18.00635 -17.64798 -17.20500 -16.65446 -16.54109 -16.40223 -16.27622 -16.12853 -15.49865 -15.26911 -15.12855 -14.53168 -14.28836 -13.99414 -13.78631 -13.58253 -13.33378 -13.23544 -12.96995 -12.77429 -12.66244 -12.38017 -12.15455 -11.98684 -11.77141 -11.68842 -11.12673 -11.06775 -10.73713 -10.56259 -9.89963 -9.64413 -9.31797 -8.76953 -8.40848 -6.28558 -0.38375 0.41501 0.42756 0.50467 1.14880 1.33977 1.40989 1.49674 1.73842 2.03962 2.08037 2.25656 2.76539 2.82055 3.14777 3.50777 3.62509 3.75573 4.00122 4.02771 4.03805 4.19544 4.39591 4.55439 4.59895 4.68432 4.85149 4.87672 4.89925 5.07333 5.07832 5.29253 5.30172 5.45374 5.51228 5.57159 5.90696 6.19697 6.25999 6.61331 6.88243 7.11427 7.30488 7.99988 8.55965 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031951 B = 0.002435 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.134894 B =11498.338851 C =11840.720589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.452 5.452 3 C -0.374 4.374 4 H 0.060 0.940 5 C 0.031 3.969 6 N -0.865 5.865 7 Si 0.964 3.036 8 H -0.285 1.285 9 H -0.267 1.267 10 H -0.260 1.260 11 C 0.496 3.504 12 O -0.619 6.619 13 C -0.116 4.116 14 C -0.097 4.097 15 C -0.093 4.093 16 C -0.069 4.069 17 C -0.054 4.054 18 S 0.011 5.989 19 C 0.193 3.807 20 N -0.568 5.568 21 C 0.289 3.711 22 N -0.469 5.469 23 H 0.460 0.540 24 N -0.343 5.343 25 C -0.093 4.093 26 C -0.093 4.093 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.277 0.723 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.279 0.721 36 H 0.155 0.845 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 -24.968 1.184 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.171 5.171 3 C -0.501 4.501 4 H 0.078 0.922 5 C -0.176 4.176 6 N -0.499 5.499 7 Si 0.787 3.213 8 H -0.211 1.211 9 H -0.191 1.191 10 H -0.184 1.184 11 C 0.286 3.714 12 O -0.505 6.505 13 C -0.120 4.120 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.072 4.072 17 C -0.202 4.202 18 S 0.241 5.759 19 C -0.197 4.197 20 N -0.298 5.298 21 C -0.011 4.011 22 N -0.190 5.190 23 H 0.310 0.690 24 N -0.179 5.179 25 C -0.113 4.113 26 C -0.112 4.112 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.295 0.705 36 H 0.172 0.828 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.406 -23.697 0.599 27.233 hybrid contribution 1.013 -0.733 0.673 1.420 sum -12.393 -24.430 1.272 27.424 Atomic orbital electron populations 1.22409 0.81187 1.02231 1.02093 1.43335 1.05984 1.03905 1.63911 1.18917 1.28146 0.96888 1.06129 0.92230 1.26359 0.97428 0.99274 0.94550 1.69894 1.23412 1.37030 1.19553 0.85499 0.79347 0.77722 0.78751 1.21146 1.19091 1.18421 1.19333 0.87236 0.85115 0.79720 1.90564 1.15781 1.88155 1.56028 1.20192 0.97648 0.94107 1.00039 1.21452 0.93394 0.98444 0.98280 1.21236 0.99980 0.91276 0.98793 1.19347 0.95870 0.94614 0.97355 1.22463 0.97653 0.97986 1.02138 1.86298 1.34118 1.03500 1.52015 1.26231 0.97029 1.00612 0.95805 1.70605 1.16467 1.13355 1.29404 1.27164 0.95117 0.90976 0.87800 1.47956 1.23473 1.14945 1.32632 0.69022 1.78267 1.17632 0.96231 1.25750 1.21148 0.94826 0.96587 0.98750 1.21167 0.99504 0.92853 0.97648 0.93471 0.90989 0.89987 0.91287 0.84600 0.82123 0.87070 0.86731 0.70538 0.82768 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.86 9.06 127.77 1.16 4.02 16 2 N -0.45 -24.52 2.89 -662.33 -1.92 -26.43 16 3 C -0.37 -22.06 8.50 84.10 0.72 -21.35 16 4 H 0.06 3.67 7.97 -2.91 -0.02 3.64 16 5 C 0.03 1.73 5.45 84.96 0.46 2.19 16 6 N -0.87 -47.73 11.48 21.68 0.25 -47.48 16 7 Si 0.96 44.58 29.64 68.60 2.03 46.61 16 8 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 11 C 0.50 26.26 7.22 86.75 0.63 26.89 16 12 O -0.62 -37.69 16.96 -4.01 -0.07 -37.76 16 13 C -0.12 -4.69 5.09 -20.09 -0.10 -4.80 16 14 C -0.10 -3.12 7.31 22.54 0.16 -2.96 16 15 C -0.09 -2.28 9.68 22.23 0.22 -2.07 16 16 C -0.07 -1.62 5.15 -19.80 -0.10 -1.73 16 17 C -0.05 -1.02 5.68 71.23 0.40 -0.62 16 18 S 0.01 0.24 22.15 -56.49 -1.25 -1.01 16 19 C 0.19 4.35 8.28 180.47 1.49 5.84 16 20 N -0.57 -11.70 11.21 -200.76 -2.25 -13.95 16 21 C 0.29 2.74 13.12 180.37 2.37 5.10 16 22 N -0.47 -4.69 7.43 -60.52 -0.45 -5.14 16 23 H 0.46 0.72 8.96 -213.10 -1.91 -1.19 16 24 N -0.34 -6.69 12.36 -58.58 -0.72 -7.41 16 25 C -0.09 -2.46 9.68 22.23 0.22 -2.25 16 26 C -0.09 -3.28 9.70 22.54 0.22 -3.06 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 3.60 6.01 -2.39 -0.01 3.58 16 29 H 0.08 3.17 4.32 -2.39 -0.01 3.16 16 30 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.14 4.23 6.71 -2.91 -0.02 4.21 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.11 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.11 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.28 -0.90 8.06 -2.91 -0.02 -0.92 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -82.77 338.18 2.68 -80.09 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -0.78 Total: 7.26 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 7.84 Total: 5.22 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -5.09 Total: -100.41 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.07 Total: -37.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.25 Total: -1.01 kcal Total: -82.77 2.68 -80.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344873732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.434 kcal (2) G-P(sol) polarization free energy of solvation -82.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds