Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46684 * 2 1 4 4 C 1.36947 * 120.00017 * 267.21682 * 3 2 1 5 5 H 1.07994 * 120.00194 * 138.75061 * 4 3 2 6 6 C 1.38973 * 119.99789 * 319.02556 * 4 3 2 7 7 N 1.31422 * 120.00059 * 165.22923 * 6 4 3 8 8 Si 1.86798 * 120.00109 * 345.22487 * 6 4 3 9 9 H 1.48505 * 109.47029 * 92.06091 * 8 6 4 10 10 H 1.48504 * 109.47263 * 212.05958 * 8 6 4 11 11 H 1.48495 * 109.47182 * 332.06282 * 8 6 4 12 12 C 1.34779 * 120.00397 * 87.21834 * 3 2 1 13 13 O 1.21686 * 120.00239 * 174.67512 * 12 3 2 14 14 C 1.47080 * 119.99725 * 354.68080 * 12 3 2 15 15 C 1.35199 * 122.48843 * 175.24982 * 14 12 3 16 16 S 1.76192 * 108.23710 * 179.90478 * 15 14 12 17 17 C 1.76051 * 90.17401 * 0.29255 * 16 15 14 18 18 N 1.38594 * 125.17241 * 179.79397 * 17 16 15 19 19 C 1.39154 * 120.00409 * 6.04044 * 18 17 16 20 20 C 1.39115 * 119.70639 * 185.52421 * 19 18 17 21 21 C 1.38313 * 119.10212 * 179.97438 * 20 19 18 22 22 C 1.38876 * 118.50130 * 0.02562 * 21 20 19 23 23 C 1.38054 * 119.32656 * 359.97438 * 22 21 20 24 24 N 1.31953 * 120.84940 * 359.74221 * 23 22 21 25 25 N 1.29433 * 109.64670 * 359.82641 * 17 16 15 26 26 H 1.09004 * 109.46919 * 186.31121 * 1 2 3 27 27 H 1.08997 * 109.47189 * 306.31036 * 1 2 3 28 28 H 1.08998 * 109.47009 * 66.31824 * 1 2 3 29 29 H 1.08999 * 109.47488 * 240.00192 * 2 1 3 30 30 H 1.09001 * 109.47367 * 119.99527 * 2 1 3 31 31 H 0.96999 * 119.99959 * 179.97438 * 7 6 4 32 32 H 1.07991 * 125.88639 * 0.02562 * 15 14 12 33 33 H 0.97008 * 119.99719 * 186.04329 * 18 17 16 34 34 H 1.08004 * 120.45398 * 359.95273 * 20 19 18 35 35 H 1.07997 * 120.75468 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.33870 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.57373 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3007 2.0076 -1.1846 5 1 2.0183 3.0397 -1.3305 6 6 2.9458 1.3134 -2.2011 7 7 2.9612 1.7998 -3.4219 8 14 3.7912 -0.3110 -1.8323 9 1 2.8419 -1.4281 -2.0697 10 1 4.9716 -0.4674 -2.7196 11 1 4.2319 -0.3289 -0.4143 12 6 2.1894 2.0355 1.1658 13 8 2.6857 3.1466 1.1728 14 6 1.7766 1.4065 2.4296 15 6 2.0094 1.9753 3.6339 16 16 1.3616 0.9119 4.8804 17 6 0.8350 -0.2254 3.6440 18 7 0.1842 -1.4246 3.8874 19 6 -0.2124 -1.7511 5.1807 20 6 -0.7606 -3.0035 5.4382 21 6 -1.1501 -3.3149 6.7283 22 6 -0.9780 -2.3595 7.7214 23 6 -0.4272 -1.1364 7.3949 24 7 -0.0596 -0.8690 6.1561 25 7 1.1487 0.2285 2.4731 26 1 -0.3633 -1.0215 0.1130 27 1 -0.3633 0.6085 0.8281 28 1 -0.3633 0.4128 -0.9411 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.4117 1.3154 -4.1313 32 1 2.5052 2.9197 3.8027 33 1 0.0053 -2.0365 3.1562 34 1 -0.8808 -3.7227 4.6416 35 1 -1.5783 -4.2793 6.9583 36 1 -1.2715 -2.5714 8.7390 37 1 -0.2913 -0.3907 8.1641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346176343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = 93.199997 kcal Electronic energy + Delta-G solvation = -23835.693361 eV Core-core repulsion = 20320.768619 eV Total energy + Delta-G solvation = -3514.924743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76890 -39.76739 -37.81433 -35.90912 -35.11679 -32.84487 -32.16986 -30.79395 -29.53590 -28.75621 -26.07968 -24.58769 -23.78350 -23.01000 -22.65070 -20.97349 -19.49930 -18.07525 -17.39796 -17.09117 -16.67084 -16.39526 -15.87313 -15.54485 -15.30667 -15.02823 -14.64827 -14.37456 -13.77087 -13.62264 -13.52322 -13.09459 -12.84477 -12.54311 -12.40642 -12.27040 -11.99513 -11.49640 -11.38478 -11.24510 -10.88449 -10.59600 -10.32039 -10.03752 -9.78211 -9.72936 -9.31481 -9.15510 -9.03517 -8.69274 -8.52640 -7.74674 -7.55087 -6.34534 -3.94923 0.61464 0.86420 1.29909 1.36490 2.04529 2.55270 2.69868 3.10867 3.27040 3.32879 3.48440 3.99203 4.19146 4.34195 4.43537 4.55317 4.66095 4.70151 4.81790 5.00509 5.16029 5.29838 5.52172 5.75197 5.82106 5.88273 5.92514 6.05362 6.20605 6.23789 6.30845 6.56385 6.61274 6.73741 6.79602 7.08346 7.59226 7.65054 7.95162 8.33641 8.60830 8.98999 9.34306 9.84982 10.76681 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.003803 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.991147 B = 7360.121693 C = 8124.294317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 N -0.444 5.444 4 C -0.306 4.306 5 H 0.105 0.895 6 C 0.060 3.940 7 N -0.866 5.866 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.265 1.265 12 C 0.525 3.475 13 O -0.563 6.563 14 C 0.062 3.938 15 C -0.251 4.251 16 S 0.180 5.820 17 C 0.279 3.721 18 N -0.607 5.607 19 C 0.385 3.615 20 C -0.211 4.211 21 C -0.034 4.034 22 C -0.218 4.218 23 C 0.153 3.847 24 N -0.529 5.529 25 N -0.487 5.487 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.274 0.726 32 H 0.181 0.819 33 H 0.430 0.570 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 -13.820 22.344 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 N -0.163 5.163 4 C -0.433 4.433 5 H 0.123 0.877 6 C -0.146 4.146 7 N -0.503 5.503 8 Si 0.718 3.282 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.189 1.189 12 C 0.311 3.689 13 O -0.445 6.445 14 C -0.070 4.070 15 C -0.394 4.394 16 S 0.428 5.572 17 C -0.091 4.091 18 N -0.238 5.238 19 C 0.151 3.849 20 C -0.236 4.236 21 C -0.060 4.060 22 C -0.241 4.241 23 C -0.004 4.004 24 N -0.246 5.246 25 N -0.211 5.211 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.198 0.802 33 H 0.270 0.730 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.529 -12.663 22.544 27.228 hybrid contribution 0.166 -1.655 -1.030 1.957 sum -8.363 -14.318 21.515 27.163 Atomic orbital electron populations 1.21885 0.96296 1.00048 1.01488 1.22060 0.95019 0.85046 1.01192 1.43644 1.55564 1.12005 1.05065 1.19107 1.36905 0.99611 0.87718 0.87727 1.25430 0.95706 0.98607 0.94902 1.69694 1.40842 1.39711 1.00043 0.86771 0.79133 0.83093 0.79195 1.20092 1.21660 1.18908 1.17192 0.83123 0.87020 0.81581 1.90679 1.47741 1.20248 1.85810 1.20416 1.00272 0.90168 0.96101 1.27473 1.09289 1.06777 0.95848 1.85458 1.52669 1.11903 1.07127 1.24184 0.99586 0.92804 0.92544 1.41027 1.58231 1.17579 1.06986 1.18240 0.91979 0.89975 0.84725 1.21305 1.07014 0.96187 0.99085 1.21372 0.93827 0.99182 0.91619 1.21960 1.05620 0.95533 1.00938 1.22469 0.91152 0.95490 0.91261 1.66585 1.23331 1.33299 1.01404 1.67194 1.18637 1.13911 1.21363 0.93709 0.92546 0.93044 0.92554 0.89377 0.91538 0.80210 0.72974 0.84384 0.84382 0.84562 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.46 37.16 0.35 -2.36 16 2 C 0.09 2.02 4.29 -4.04 -0.02 2.01 16 3 N -0.44 -11.73 2.15 -116.15 -0.25 -11.98 16 4 C -0.31 -9.09 9.33 -14.99 -0.14 -9.23 16 5 H 0.11 3.44 8.02 -52.49 -0.42 3.02 16 6 C 0.06 1.72 5.39 -17.45 -0.09 1.62 16 7 N -0.87 -25.82 13.96 55.50 0.77 -25.04 16 8 Si 0.89 21.94 24.80 -169.99 -4.22 17.72 16 9 H -0.27 -6.27 6.64 56.52 0.38 -5.90 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.60 7.10 56.52 0.40 -6.20 16 12 C 0.52 13.65 7.57 -12.67 -0.10 13.55 16 13 O -0.56 -16.32 16.62 5.20 0.09 -16.23 16 14 C 0.06 1.30 6.33 -84.61 -0.54 0.77 16 15 C -0.25 -4.53 10.84 29.65 0.32 -4.21 16 16 S 0.18 2.57 20.29 -107.50 -2.18 0.39 16 17 C 0.28 4.25 8.36 -87.90 -0.73 3.52 16 18 N -0.61 -7.04 5.53 -12.06 -0.07 -7.11 16 19 C 0.38 3.95 7.43 -154.88 -1.15 2.80 16 20 C -0.21 -1.55 9.94 -39.23 -0.39 -1.94 16 21 C -0.03 -0.20 10.17 -39.32 -0.40 -0.60 16 22 C -0.22 -1.26 10.11 -39.41 -0.40 -1.66 16 23 C 0.15 1.15 11.17 -17.57 -0.20 0.96 16 24 N -0.53 -5.62 6.91 -12.40 -0.09 -5.71 16 25 N -0.49 -8.97 4.95 -10.56 -0.05 -9.02 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.12 6.77 -51.93 -0.35 0.77 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.32 3.21 -51.93 -0.17 1.15 16 30 H 0.09 1.87 5.54 -51.93 -0.29 1.58 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.18 3.12 8.01 -52.49 -0.42 2.70 16 33 H 0.43 4.08 8.82 -40.82 -0.36 3.72 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -35.58 323.66 -8.30 -43.88 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.71 Total: 2.99 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.48 Total: 5.24 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.32 Total: -58.86 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.22 Total: 17.72 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.18 Total: 0.39 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.58 -8.30 -43.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346176343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.080 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds